Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is yfcH [H]
Identifier: 187735670
GI number: 187735670
Start: 1411344
End: 1412213
Strand: Direct
Name: yfcH [H]
Synonym: Amuc_1176
Alternate gene names: 187735670
Gene position: 1411344-1412213 (Clockwise)
Preceding gene: 187735668
Following gene: 187735671
Centisome position: 52.98
GC content: 59.08
Gene sequence:
>870_bases ATGAATGTAGCCATTACGGGATCCGGAGGATTTATAGGGAGTCATTTGTCCAAGCGTCTTGAGATGTTCGGGCATCGGGT GACGCCCTTGCGGCGCTATCTGTTTGCCCAGGAGGGCGTGGATTGTCTGGCGCAGGCCCTGGCGGGATGCCATGCCGTCA TCAATCTGGCCGGAGCGCCCATCGACCGGCGCTGGACGGATGCCTACAAGAGGGAGCTGGTGGAGAGCCGCATCATGACC ACCCGCAAGCTGGTGGAAGCGGTCAACAGGTTGCATGAACCGCCGGGAGTGATGATTTCCGCCTCTGCTGTCGGGTACTA TGGCTCGTCCGGCGGCTGTCATGGGGAACTGGACGATCCGGAAGCGGATTCCTTTCTGGCGGAATTGTGCGTGGCCTGGG AAAAGGAGGCCGGGCTGGTGAACAGCTCCGTGCGGCTGGTCCTTACCCGGTTTGGCGTAGTTCTTTCTCCGGATGGAGGG GCGCTCCCCGAGATGATGCGGCCGGCCCGGTTCGGCGTTACGGCAACCGCAGGAAATCCGGATCATCTTTTTTCCTGGGT GGCTTTGGAAGATCTGGCGGATGCCCTGGTCTTCATTATGGGCCGGCAGGATATTTCCGGCCCGGTCAATGTAACGGCGC CGGAGCTCACCACCAACCGGGAATTCTACAGGGCAGCCGCGGAACATTTCCACACCCGTCTGTCCATCCGTGTTCCGGAC GCCGTTCTGCGGTTGCTGATGGGAGAAGCTTCCCAGGTGATTACCGGCGGCCAGTGCGCCGTTCCGGAGACGCTGATGAG GGAAGGGTTTACATTCCAATATCCGGATATCCGCACTTTTTTTAACAAAGCATTTTCTGTCAAATCATGA
Upstream 100 bases:
>100_bases GGAAATGTCTTATCCGGCAAAGGCTGCCTGTTCCGTGGGGGGATTCCGGCGAGGTGCCGGACCTCCGCCCCGGAGGCGGG CCTCCATTTGGGTTAAGGTG
Downstream 100 bases:
>100_bases GCATGATACAGACCATCGTTACTTCCCTGTTTCACGGCCATTCCGTCAAAACCGATCCCATGCCGGATTTCAATCTGGAA CGTTATCTGGGGGAATGGCA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 289; Mature: 289
Protein sequence:
>289_residues MNVAITGSGGFIGSHLSKRLEMFGHRVTPLRRYLFAQEGVDCLAQALAGCHAVINLAGAPIDRRWTDAYKRELVESRIMT TRKLVEAVNRLHEPPGVMISASAVGYYGSSGGCHGELDDPEADSFLAELCVAWEKEAGLVNSSVRLVLTRFGVVLSPDGG ALPEMMRPARFGVTATAGNPDHLFSWVALEDLADALVFIMGRQDISGPVNVTAPELTTNREFYRAAAEHFHTRLSIRVPD AVLRLLMGEASQVITGGQCAVPETLMREGFTFQYPDIRTFFNKAFSVKS
Sequences:
>Translated_289_residues MNVAITGSGGFIGSHLSKRLEMFGHRVTPLRRYLFAQEGVDCLAQALAGCHAVINLAGAPIDRRWTDAYKRELVESRIMT TRKLVEAVNRLHEPPGVMISASAVGYYGSSGGCHGELDDPEADSFLAELCVAWEKEAGLVNSSVRLVLTRFGVVLSPDGG ALPEMMRPARFGVTATAGNPDHLFSWVALEDLADALVFIMGRQDISGPVNVTAPELTTNREFYRAAAEHFHTRLSIRVPD AVLRLLMGEASQVITGGQCAVPETLMREGFTFQYPDIRTFFNKAFSVKS >Mature_289_residues MNVAITGSGGFIGSHLSKRLEMFGHRVTPLRRYLFAQEGVDCLAQALAGCHAVINLAGAPIDRRWTDAYKRELVESRIMT TRKLVEAVNRLHEPPGVMISASAVGYYGSSGGCHGELDDPEADSFLAELCVAWEKEAGLVNSSVRLVLTRFGVVLSPDGG ALPEMMRPARFGVTATAGNPDHLFSWVALEDLADALVFIMGRQDISGPVNVTAPELTTNREFYRAAAEHFHTRLSIRVPD AVLRLLMGEASQVITGGQCAVPETLMREGFTFQYPDIRTFFNKAFSVKS
Specific function: Unknown
COG id: COG1090
COG function: function code R; Predicted nucleoside-diphosphate sugar epimerase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the sugar epimerase family. SDR39U1 subfamily [H]
Homologues:
Organism=Homo sapiens, GI116812630, Length=284, Percent_Identity=31.3380281690141, Blast_Score=145, Evalue=6e-35, Organism=Escherichia coli, GI1788642, Length=289, Percent_Identity=38.4083044982699, Blast_Score=191, Evalue=5e-50, Organism=Drosophila melanogaster, GI28573846, Length=282, Percent_Identity=28.3687943262411, Blast_Score=125, Evalue=4e-29,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013549 - InterPro: IPR001509 - InterPro: IPR016040 - InterPro: IPR010099 [H]
Pfam domain/function: PF08338 DUF1731; PF01370 Epimerase [H]
EC number: NA
Molecular weight: Translated: 31516; Mature: 31516
Theoretical pI: Translated: 6.51; Mature: 6.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNVAITGSGGFIGSHLSKRLEMFGHRVTPLRRYLFAQEGVDCLAQALAGCHAVINLAGAP CEEEEECCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCC IDRRWTDAYKRELVESRIMTTRKLVEAVNRLHEPPGVMISASAVGYYGSSGGCHGELDDP CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCC EADSFLAELCVAWEKEAGLVNSSVRLVLTRFGVVLSPDGGALPEMMRPARFGVTATAGNP CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCEEECCCCCCCHHHHCHHHCCEEECCCCH DHLFSWVALEDLADALVFIMGRQDISGPVNVTAPELTTNREFYRAAAEHFHTRLSIRVPD HHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHEEEECCH AVLRLLMGEASQVITGGQCAVPETLMREGFTFQYPDIRTFFNKAFSVKS HHHHHHHCCHHHEEECCCCCCCHHHHHCCCEEECCHHHHHHHHHHCCCC >Mature Secondary Structure MNVAITGSGGFIGSHLSKRLEMFGHRVTPLRRYLFAQEGVDCLAQALAGCHAVINLAGAP CEEEEECCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCC IDRRWTDAYKRELVESRIMTTRKLVEAVNRLHEPPGVMISASAVGYYGSSGGCHGELDDP CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCC EADSFLAELCVAWEKEAGLVNSSVRLVLTRFGVVLSPDGGALPEMMRPARFGVTATAGNP CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCEEECCCCCCCHHHHCHHHCCEEECCCCH DHLFSWVALEDLADALVFIMGRQDISGPVNVTAPELTTNREFYRAAAEHFHTRLSIRVPD HHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHEEEECCH AVLRLLMGEASQVITGGQCAVPETLMREGFTFQYPDIRTFFNKAFSVKS HHHHHHHCCHHHEEECCCCCCCHHHHHCCCEEECCHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9205837; 9278503 [H]