Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
---|---|
Accession | NC_010655 |
Length | 2,664,102 |
Click here to switch to the map view.
The map label for this gene is 187735657
Identifier: 187735657
GI number: 187735657
Start: 1394860
End: 1396125
Strand: Direct
Name: 187735657
Synonym: Amuc_1163
Alternate gene names: NA
Gene position: 1394860-1396125 (Clockwise)
Preceding gene: 187735656
Following gene: 187735665
Centisome position: 52.36
GC content: 64.61
Gene sequence:
>1266_bases ATGCAGTGGCTGCTGAATGCCGTGCTGGCGGTGGAGTGCCTTAGCATGCCTTTTTTTGCCGCCGGGGCGGTAGCTGGGAT GGTCTGGTACGGAGGACGCAGGATGGGGGCTGACTGGGGCTGGCTGGCGGGAGGCGCCCTTGCCGCCGCAGGTTTATTTT TGGCGGTGTGGGGGTGGCTGCGGCTCCGGGGCCGTTTTTTCAGCAGGCGTGATACGGCGGCCTTTTTGGATGAACAGCTG GGGTTGCATGCGGCGTTGAGCGCCGGTGAGGAATGGGGCAATGCCGTGGAGGCAGGGGAAAGCTCGGTACGGGGGAATTC CGTGCTGCGGATACGTTCCGCCTGGTGCCTGGCCTGGCTGGCGGGAGGCGCGGTTCTTATGGCTTGCGGGGCTTTTTTGC CGTTGCCCGCGCCGCAAGCCGTAGGGCAGCTTCCGGATTTGCCGCCCGTTCTGGCCCGGGTGGGGGAAGTCCTGGACCGC CTGGCGGAGATGGAGAGCGTGGATAATAAGAGCCTGGAGCCTTTCCGGGAGCAGTTGGAGGATTTGAAAAGAATGCACCG GAATGAGATGTATTCCCATGCCGGACTGGAAGCGGCGGATGCCCTGAAGGGGAAAACGGCAGCGGCCGTTGCCGGATTAT CCAATCAGATGTATCGGACGGATTCCGCCCTTTCCCTGCTGGACAGTCTGAATGGAGCGTCCAGCCCGGAGGCGATGCAG TCCCTTCAGGAGGCGTTGACGGGAATGGAGTCCCTCGCCCTGCAGCCGGGCGGCATCATGAGCCGCCAGCTCCAGGAGCT GGAGGCTTCCCTGCCTTCCCGGCAGATTGATCCGGAGACGGCCCTCCGTCTGCGGGAACAGCTGGAACGGGCCGCCCAGC AGCTGCGGAGCATGTGCGGGCAGTGCGGCATATCCCTGATGGCGTCTCCGGATGACCGTACCGTGATGGAAGCCGGGCAG GGAGAGGGAAGTGAACCCGGACGAGGAGGAACGGGGCGTGGACGCGGGGACGCTCCCCTTGCCTTTGAGATGGAAGAGCG CCCCCGGCTTGACACGGTTTCCAGACGGGCGGTTCATGAGGACTTGAGCCGCGCCGCTCTGGGGGAAGCTGCGGGGGTGG AGTCGGCGGCTCCCTCCCCGGAAGGGGCTGGAAATGGACTGGAACACGGCGGCCGGGGGGCTCGTCCGGCCCGCGGTGGA GATGCCGTGTGGTCTGATTGCCTTACTCCTCAGGAACAGTCAGCCCTGAAGGAAATTTTCAGATAG
Upstream 100 bases:
>100_bases TGCGGAAAAGCATTTTTGTCTTTCCGGGAGGAACCTGTTGAGCCATGATATGGTTATGCCCTTAATCGTGGGACAGGAAT GGCGGAGGAGAATTTCCCGC
Downstream 100 bases:
>100_bases ATTGATTGTTTTCTCCTGAAGGCCGGGAGCGCGTACCCCCCTGCCGCGGTTGTCCCCGGGGAAGCAGGCCGGTCCTGGTA AACAGAGCGTCCAGAACAAG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 421; Mature: 421
Protein sequence:
>421_residues MQWLLNAVLAVECLSMPFFAAGAVAGMVWYGGRRMGADWGWLAGGALAAAGLFLAVWGWLRLRGRFFSRRDTAAFLDEQL GLHAALSAGEEWGNAVEAGESSVRGNSVLRIRSAWCLAWLAGGAVLMACGAFLPLPAPQAVGQLPDLPPVLARVGEVLDR LAEMESVDNKSLEPFREQLEDLKRMHRNEMYSHAGLEAADALKGKTAAAVAGLSNQMYRTDSALSLLDSLNGASSPEAMQ SLQEALTGMESLALQPGGIMSRQLQELEASLPSRQIDPETALRLREQLERAAQQLRSMCGQCGISLMASPDDRTVMEAGQ GEGSEPGRGGTGRGRGDAPLAFEMEERPRLDTVSRRAVHEDLSRAALGEAAGVESAAPSPEGAGNGLEHGGRGARPARGG DAVWSDCLTPQEQSALKEIFR
Sequences:
>Translated_421_residues MQWLLNAVLAVECLSMPFFAAGAVAGMVWYGGRRMGADWGWLAGGALAAAGLFLAVWGWLRLRGRFFSRRDTAAFLDEQL GLHAALSAGEEWGNAVEAGESSVRGNSVLRIRSAWCLAWLAGGAVLMACGAFLPLPAPQAVGQLPDLPPVLARVGEVLDR LAEMESVDNKSLEPFREQLEDLKRMHRNEMYSHAGLEAADALKGKTAAAVAGLSNQMYRTDSALSLLDSLNGASSPEAMQ SLQEALTGMESLALQPGGIMSRQLQELEASLPSRQIDPETALRLREQLERAAQQLRSMCGQCGISLMASPDDRTVMEAGQ GEGSEPGRGGTGRGRGDAPLAFEMEERPRLDTVSRRAVHEDLSRAALGEAAGVESAAPSPEGAGNGLEHGGRGARPARGG DAVWSDCLTPQEQSALKEIFR >Mature_421_residues MQWLLNAVLAVECLSMPFFAAGAVAGMVWYGGRRMGADWGWLAGGALAAAGLFLAVWGWLRLRGRFFSRRDTAAFLDEQL GLHAALSAGEEWGNAVEAGESSVRGNSVLRIRSAWCLAWLAGGAVLMACGAFLPLPAPQAVGQLPDLPPVLARVGEVLDR LAEMESVDNKSLEPFREQLEDLKRMHRNEMYSHAGLEAADALKGKTAAAVAGLSNQMYRTDSALSLLDSLNGASSPEAMQ SLQEALTGMESLALQPGGIMSRQLQELEASLPSRQIDPETALRLREQLERAAQQLRSMCGQCGISLMASPDDRTVMEAGQ GEGSEPGRGGTGRGRGDAPLAFEMEERPRLDTVSRRAVHEDLSRAALGEAAGVESAAPSPEGAGNGLEHGGRGARPARGG DAVWSDCLTPQEQSALKEIFR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44775; Mature: 44775
Theoretical pI: Translated: 4.79; Mature: 4.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 5.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQWLLNAVLAVECLSMPFFAAGAVAGMVWYGGRRMGADWGWLAGGALAAAGLFLAVWGWL CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCEEECCCCCHHHHHHHHHHHHHHHHHHHH RLRGRFFSRRDTAAFLDEQLGLHAALSAGEEWGNAVEAGESSVRGNSVLRIRSAWCLAWL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHHH AGGAVLMACGAFLPLPAPQAVGQLPDLPPVLARVGEVLDRLAEMESVDNKSLEPFREQLE HHHHHHHHHHHHCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH DLKRMHRNEMYSHAGLEAADALKGKTAAAVAGLSNQMYRTDSALSLLDSLNGASSPEAMQ HHHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH SLQEALTGMESLALQPGGIMSRQLQELEASLPSRQIDPETALRLREQLERAAQQLRSMCG HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH QCGISLMASPDDRTVMEAGQGEGSEPGRGGTGRGRGDAPLAFEMEERPRLDTVSRRAVHE HCCCEEECCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHH DLSRAALGEAAGVESAAPSPEGAGNGLEHGGRGARPARGGDAVWSDCLTPQEQSALKEIF HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHH R C >Mature Secondary Structure MQWLLNAVLAVECLSMPFFAAGAVAGMVWYGGRRMGADWGWLAGGALAAAGLFLAVWGWL CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCEEECCCCCHHHHHHHHHHHHHHHHHHHH RLRGRFFSRRDTAAFLDEQLGLHAALSAGEEWGNAVEAGESSVRGNSVLRIRSAWCLAWL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHHH AGGAVLMACGAFLPLPAPQAVGQLPDLPPVLARVGEVLDRLAEMESVDNKSLEPFREQLE HHHHHHHHHHHHCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH DLKRMHRNEMYSHAGLEAADALKGKTAAAVAGLSNQMYRTDSALSLLDSLNGASSPEAMQ HHHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH SLQEALTGMESLALQPGGIMSRQLQELEASLPSRQIDPETALRLREQLERAAQQLRSMCG HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH QCGISLMASPDDRTVMEAGQGEGSEPGRGGTGRGRGDAPLAFEMEERPRLDTVSRRAVHE HCCCEEECCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHH DLSRAALGEAAGVESAAPSPEGAGNGLEHGGRGARPARGGDAVWSDCLTPQEQSALKEIF HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHH R C
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA