Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is yxaH [H]
Identifier: 187735665
GI number: 187735665
Start: 1406676
End: 1407860
Strand: Direct
Name: yxaH [H]
Synonym: Amuc_1171
Alternate gene names: 187735665
Gene position: 1406676-1407860 (Clockwise)
Preceding gene: 187735657
Following gene: 187735666
Centisome position: 52.8
GC content: 57.47
Gene sequence:
>1185_bases ATGCCTTCCGTATATCCCCCCGGCAACGAACGCATTTACGTGGTGGACGCTCTGCGCGGCTTTGCCGTAATGGCGATCAT GCTGCTGCATTTTCTTGAACATTTCATCTATAATTCCTATCCCGTGGCTTCTTCCCCAATGATGGAAGCGGCCAACCAGC AGTTCAAGGAGGTCTTTTTTTTCCTGTTTGCCGGCAAGTCCTACACCATTTTCGCCCTTCTGTTCGGATTCACTTTTGCG GTCCAGTACCGTAACCAGGCCCGGAAGGGAAGGGATTTTGCGGGCAGGTTTGTCTGGCGCATGTGCCTGCTGGCGGTGTT CGCCTGCATGAATGCAGCGTTTTTCCCGGGCGGTGATGTTCTGCTGACTTTTTCACTTGCAGGTTTGTTGCTGGTGCCGT GCCGCCGGTTGAAGACATCCTCGCTGGTGGCTTTGTCCCTGTTTTTCCTGGCCCAGCCGCTGGAGTGGGCCTATGCGGCG GTGCAGTGGATGCATCCGGGTTGGGTTCCTCCCTCCCTGTCTGTTGCGGAATCGTACGCTTCCTTAAAATCCGCCGTGGA TACGGGAAATTTCTGGGTGATGGCCTGGGAGAACCTGACTACAGGACAATGGGCCAGCCTGGCATGGGGTATTGAAGCCG GGCGTTTGATGCAGGCTCCGGGTCTGTTCCTGCTGGGGTTTGTTCTGGGGCGCCAGGATTTCTTTTTGCAGAATGACGGA ACGGCTGTGTTCTGGACCCGCGGACTGCTATTTTCCCTGGCCGGGGCCTGTGCATTTTACGTGGTGATGTGCCTGCCGGG GCTGCCGGGGCCTGTGCATACCGTGTTTAGCATGTGGCACAATGTTTGCTTTACCGGCGTATGGGTGGCCGGGTTCGTTC TGTTGTACCGGCTGGAATATTTCAGGAAAGCGACGGCTCCGTTGCTGACCTACGGGCGCATGAGCCTGACCAACTATGTT TCCCAGTCCGTGATCGGCTCCCTGATTTTTTTCCCGTATGCACTGGGGCTAGCTCCCTACTGCGGGTATCTGGCCAGTTT TGTGGTCGGCTTTGCCGCCATGACCGGACAGATATGGTTCTGCCGCTGGTGGCTGGAGCGGCACCGCTACGGGGTGCTGG AAGGATTGTGGCACCGGGCGACATGGCTGGCCGCCGGGAAGGTTTCCGCTCCGGAACACCGGTAA
Upstream 100 bases:
>100_bases GAAGAGAAAATACCCTGCGGGGTTTGAGTGGTAAATGGAATTGCCGCAATATATGTTCCATCTGTTGAAAAAAGAAGGCT TCCTGGCATGTATTATTGTC
Downstream 100 bases:
>100_bases GAAACGGGGGCCGGCGCAATGATGTTTCCCGATACTTGCGGGACGCTTTTTAGCGTCTTCTGCCAAAGCCGGTGATTTAT CCGGACGGAGGATGCATCCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 394; Mature: 393
Protein sequence:
>394_residues MPSVYPPGNERIYVVDALRGFAVMAIMLLHFLEHFIYNSYPVASSPMMEAANQQFKEVFFFLFAGKSYTIFALLFGFTFA VQYRNQARKGRDFAGRFVWRMCLLAVFACMNAAFFPGGDVLLTFSLAGLLLVPCRRLKTSSLVALSLFFLAQPLEWAYAA VQWMHPGWVPPSLSVAESYASLKSAVDTGNFWVMAWENLTTGQWASLAWGIEAGRLMQAPGLFLLGFVLGRQDFFLQNDG TAVFWTRGLLFSLAGACAFYVVMCLPGLPGPVHTVFSMWHNVCFTGVWVAGFVLLYRLEYFRKATAPLLTYGRMSLTNYV SQSVIGSLIFFPYALGLAPYCGYLASFVVGFAAMTGQIWFCRWWLERHRYGVLEGLWHRATWLAAGKVSAPEHR
Sequences:
>Translated_394_residues MPSVYPPGNERIYVVDALRGFAVMAIMLLHFLEHFIYNSYPVASSPMMEAANQQFKEVFFFLFAGKSYTIFALLFGFTFA VQYRNQARKGRDFAGRFVWRMCLLAVFACMNAAFFPGGDVLLTFSLAGLLLVPCRRLKTSSLVALSLFFLAQPLEWAYAA VQWMHPGWVPPSLSVAESYASLKSAVDTGNFWVMAWENLTTGQWASLAWGIEAGRLMQAPGLFLLGFVLGRQDFFLQNDG TAVFWTRGLLFSLAGACAFYVVMCLPGLPGPVHTVFSMWHNVCFTGVWVAGFVLLYRLEYFRKATAPLLTYGRMSLTNYV SQSVIGSLIFFPYALGLAPYCGYLASFVVGFAAMTGQIWFCRWWLERHRYGVLEGLWHRATWLAAGKVSAPEHR >Mature_393_residues PSVYPPGNERIYVVDALRGFAVMAIMLLHFLEHFIYNSYPVASSPMMEAANQQFKEVFFFLFAGKSYTIFALLFGFTFAV QYRNQARKGRDFAGRFVWRMCLLAVFACMNAAFFPGGDVLLTFSLAGLLLVPCRRLKTSSLVALSLFFLAQPLEWAYAAV QWMHPGWVPPSLSVAESYASLKSAVDTGNFWVMAWENLTTGQWASLAWGIEAGRLMQAPGLFLLGFVLGRQDFFLQNDGT AVFWTRGLLFSLAGACAFYVVMCLPGLPGPVHTVFSMWHNVCFTGVWVAGFVLLYRLEYFRKATAPLLTYGRMSLTNYVS QSVIGSLIFFPYALGLAPYCGYLASFVVGFAAMTGQIWFCRWWLERHRYGVLEGLWHRATWLAAGKVSAPEHR
Specific function: Involved in transport (Potential) [H]
COG id: COG2311
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007349 [H]
Pfam domain/function: PF04235 DUF418 [H]
EC number: NA
Molecular weight: Translated: 44297; Mature: 44166
Theoretical pI: Translated: 9.13; Mature: 9.13
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 5.6 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 5.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPSVYPPGNERIYVVDALRGFAVMAIMLLHFLEHFIYNSYPVASSPMMEAANQQFKEVFF CCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH FLFAGKSYTIFALLFGFTFAVQYRNQARKGRDFAGRFVWRMCLLAVFACMNAAFFPGGDV HHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH LLTFSLAGLLLVPCRRLKTSSLVALSLFFLAQPLEWAYAAVQWMHPGWVPPSLSVAESYA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCHHHHHHHH SLKSAVDTGNFWVMAWENLTTGQWASLAWGIEAGRLMQAPGLFLLGFVLGRQDFFLQNDG HHHHHHCCCCEEEEEECCCCCCCHHHHHHCCCCCCHHCCCHHHHHHHHHCCCCEEEECCC TAVFWTRGLLFSLAGACAFYVVMCLPGLPGPVHTVFSMWHNVCFTGVWVAGFVLLYRLEY CEEEHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FRKATAPLLTYGRMSLTNYVSQSVIGSLIFFPYALGLAPYCGYLASFVVGFAAMTGQIWF HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH CRWWLERHRYGVLEGLWHRATWLAAGKVSAPEHR HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC >Mature Secondary Structure PSVYPPGNERIYVVDALRGFAVMAIMLLHFLEHFIYNSYPVASSPMMEAANQQFKEVFF CCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH FLFAGKSYTIFALLFGFTFAVQYRNQARKGRDFAGRFVWRMCLLAVFACMNAAFFPGGDV HHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH LLTFSLAGLLLVPCRRLKTSSLVALSLFFLAQPLEWAYAAVQWMHPGWVPPSLSVAESYA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCHHHHHHHH SLKSAVDTGNFWVMAWENLTTGQWASLAWGIEAGRLMQAPGLFLLGFVLGRQDFFLQNDG HHHHHHCCCCEEEEEECCCCCCCHHHHHHCCCCCCHHCCCHHHHHHHHHCCCCEEEECCC TAVFWTRGLLFSLAGACAFYVVMCLPGLPGPVHTVFSMWHNVCFTGVWVAGFVLLYRLEY CEEEHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FRKATAPLLTYGRMSLTNYVSQSVIGSLIFFPYALGLAPYCGYLASFVVGFAAMTGQIWF HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH CRWWLERHRYGVLEGLWHRATWLAAGKVSAPEHR HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7584049; 9384377 [H]