Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is ltaE [H]
Identifier: 187735656
GI number: 187735656
Start: 1393663
End: 1394700
Strand: Direct
Name: ltaE [H]
Synonym: Amuc_1162
Alternate gene names: 187735656
Gene position: 1393663-1394700 (Clockwise)
Preceding gene: 187735654
Following gene: 187735657
Centisome position: 52.31
GC content: 58.48
Gene sequence:
>1038_bases ATGATTCTTTTCAACTGTGATTACAGTGAAGGCGCCCATGCGGATATTCTCCGCAGAATGGCGGAAACGAATATGGAGCA GACTGCCGGTTACGGGGAGGACCCCTATTGCGACCAGGCCCGGAAGCTGATTGCCGGCTTGTGCGGCAGAACGGATCTGG ATATCCATTTCCTTATCGGCGGGACCCAGACCAATTTCACGGTAATTGCGGCGGCGCTGCGTCCCCATCAATGCGTGCTG TGCGCGGACACGGGCCATATCAATGTGCACGAGTCGGGAGCCGTTGAGGCTTGCGGACACAAGGTTTCCGCTATTCCTTC CCCGGATGGGAAGCTGACGGCCCGGCAAATTGAGGAGGCGTGGCACGCCCACTGGGATGACGAGACCCGTGAGCATATGC CTCAGCCCCGGATGGTTTATATTTCCCAGCCGACCGAATTGGGCACCATTTATTCCAGAAAGGAACTTCAGGAAATTTCC GGAGTCTGCCGCCGGCGGGGGCTGTATTTGTATATGGACGGAGCACGCCTCGGCTACGGCTTGTGCGATGAGGACAATGA CCTGGATTTGCCGGCGATTGCCTCCCTTTGCGATGCTTTTTACATCGGCGGCACGAAGGTCGGCGCTCTGTTTGGTGAAG CCCTGGTTCTGCGGCATGAGGCCCTGAAGGAGGATTTCCGTTACATCGCCAAGCAGAAGGGCGGCCGTCTTGCGAAAGGG CGGCTTCTGGGCATTCAGTTCCTGGAGCTGTTCCGCGACGGCCTTTATTTCCGGCTGGGCGCCCATGCGGACCGCCTGGC TGTGATGCTGCGGGATTTTTGCCGTTCCAGAGGGCTGGCGCTTCCCTTTTCCAGCGGAACGAACCAACAGTTTGTCACGA TGCCCGATTCCGTTCTGGAGGAGCTGGGGAGGAAATACGGTTTTGCCTATTTGCGCCGGGAGGATGAAACCCACAGCACG GTGCGCTTCTGCACGAGCTGGGCCACCCGAGAGGAAGACGTACGGGAATTGATGGCGGATATCGCCCGCCTGTGCTGA
Upstream 100 bases:
>100_bases TGGAGTTTCCAGCAGCGCTGTTCCGGTTCCGGTGTATTTTTCATATTCCTTTACATCAAAGGTTCCGGGGGATATGGTCC CCGCGTTTTTCAGCAAGGCA
Downstream 100 bases:
>100_bases AATTTCCCTCCGTCCGGCAATGCCGGGAAACTGCGGAAAGGGACGTTCCCCCATTCGTTTGCGGAAAAGCATTTTTGTCT TTCCGGGAGGAACCTGTTGA
Product: Threonine aldolase
Products: NA
Alternate protein names: Low specificity L-TA [H]
Number of amino acids: Translated: 345; Mature: 345
Protein sequence:
>345_residues MILFNCDYSEGAHADILRRMAETNMEQTAGYGEDPYCDQARKLIAGLCGRTDLDIHFLIGGTQTNFTVIAAALRPHQCVL CADTGHINVHESGAVEACGHKVSAIPSPDGKLTARQIEEAWHAHWDDETREHMPQPRMVYISQPTELGTIYSRKELQEIS GVCRRRGLYLYMDGARLGYGLCDEDNDLDLPAIASLCDAFYIGGTKVGALFGEALVLRHEALKEDFRYIAKQKGGRLAKG RLLGIQFLELFRDGLYFRLGAHADRLAVMLRDFCRSRGLALPFSSGTNQQFVTMPDSVLEELGRKYGFAYLRREDETHST VRFCTSWATREEDVRELMADIARLC
Sequences:
>Translated_345_residues MILFNCDYSEGAHADILRRMAETNMEQTAGYGEDPYCDQARKLIAGLCGRTDLDIHFLIGGTQTNFTVIAAALRPHQCVL CADTGHINVHESGAVEACGHKVSAIPSPDGKLTARQIEEAWHAHWDDETREHMPQPRMVYISQPTELGTIYSRKELQEIS GVCRRRGLYLYMDGARLGYGLCDEDNDLDLPAIASLCDAFYIGGTKVGALFGEALVLRHEALKEDFRYIAKQKGGRLAKG RLLGIQFLELFRDGLYFRLGAHADRLAVMLRDFCRSRGLALPFSSGTNQQFVTMPDSVLEELGRKYGFAYLRREDETHST VRFCTSWATREEDVRELMADIARLC >Mature_345_residues MILFNCDYSEGAHADILRRMAETNMEQTAGYGEDPYCDQARKLIAGLCGRTDLDIHFLIGGTQTNFTVIAAALRPHQCVL CADTGHINVHESGAVEACGHKVSAIPSPDGKLTARQIEEAWHAHWDDETREHMPQPRMVYISQPTELGTIYSRKELQEIS GVCRRRGLYLYMDGARLGYGLCDEDNDLDLPAIASLCDAFYIGGTKVGALFGEALVLRHEALKEDFRYIAKQKGGRLAKG RLLGIQFLELFRDGLYFRLGAHADRLAVMLRDFCRSRGLALPFSSGTNQQFVTMPDSVLEELGRKYGFAYLRREDETHST VRFCTSWATREEDVRELMADIARLC
Specific function: Catalyzes the cleavage of L-allo-threonine and L- threonine to glycine and acetaldehyde. Can also act on L-erythro- phenylserine, L-threo-phenylserine, L-beta-3,4- methylenedioxyphenylserine and L-beta-3,4-dihydroxyphenylserine [H]
COG id: COG2008
COG function: function code E; Threonine aldolase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the threonine aldolase family [H]
Homologues:
Organism=Saccharomyces cerevisiae, GI6320789, Length=306, Percent_Identity=26.1437908496732, Blast_Score=70, Evalue=4e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001597 - InterPro: IPR015424 - InterPro: IPR015421 - InterPro: IPR015422 [H]
Pfam domain/function: PF01212 Beta_elim_lyase [H]
EC number: =4.1.2.5 [H]
Molecular weight: Translated: 38739; Mature: 38739
Theoretical pI: Translated: 6.09; Mature: 6.09
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.5 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 6.1 %Cys+Met (Translated Protein) 3.5 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 6.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MILFNCDYSEGAHADILRRMAETNMEQTAGYGEDPYCDQARKLIAGLCGRTDLDIHFLIG CEEEECCCCCCCHHHHHHHHHHCCHHHHCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEE GTQTNFTVIAAALRPHQCVLCADTGHINVHESGAVEACGHKVSAIPSPDGKLTARQIEEA CCCCCCEEEEEECCCCEEEEEECCCEEEECCCCCHHHCCCCCCCCCCCCCCHHHHHHHHH WHAHWDDETREHMPQPRMVYISQPTELGTIYSRKELQEISGVCRRRGLYLYMDGARLGYG HHCCCCCCHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCC LCDEDNDLDLPAIASLCDAFYIGGTKVGALFGEALVLRHEALKEDFRYIAKQKGGRLAKG CCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH RLLGIQFLELFRDGLYFRLGAHADRLAVMLRDFCRSRGLALPFSSGTNQQFVTMPDSVLE HHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHCCCEEEECCCCCCEEEECCHHHHH ELGRKYGFAYLRREDETHSTVRFCTSWATREEDVRELMADIARLC HHHHHHCCHHEECCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHC >Mature Secondary Structure MILFNCDYSEGAHADILRRMAETNMEQTAGYGEDPYCDQARKLIAGLCGRTDLDIHFLIG CEEEECCCCCCCHHHHHHHHHHCCHHHHCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEE GTQTNFTVIAAALRPHQCVLCADTGHINVHESGAVEACGHKVSAIPSPDGKLTARQIEEA CCCCCCEEEEEECCCCEEEEEECCCEEEECCCCCHHHCCCCCCCCCCCCCCHHHHHHHHH WHAHWDDETREHMPQPRMVYISQPTELGTIYSRKELQEISGVCRRRGLYLYMDGARLGYG HHCCCCCCHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCC LCDEDNDLDLPAIASLCDAFYIGGTKVGALFGEALVLRHEALKEDFRYIAKQKGGRLAKG CCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH RLLGIQFLELFRDGLYFRLGAHADRLAVMLRDFCRSRGLALPFSSGTNQQFVTMPDSVLE HHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHCCCEEEECCCCCCEEEECCHHHHH ELGRKYGFAYLRREDETHSTVRFCTSWATREEDVRELMADIARLC HHHHHHCCHHEECCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9464392 [H]