Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is yccK [H]
Identifier: 187735654
GI number: 187735654
Start: 1391587
End: 1392735
Strand: Direct
Name: yccK [H]
Synonym: Amuc_1160
Alternate gene names: 187735654
Gene position: 1391587-1392735 (Clockwise)
Preceding gene: 187735653
Following gene: 187735656
Centisome position: 52.23
GC content: 58.05
Gene sequence:
>1149_bases ATGAGCATGTATAAACACTATTCTGACGGCCGCCGCCGCTTTCTCAAAATGTCCGCCTTGTTCGGTACGTCTGCGCTGAT TTCTCCGGCCATTGCCCGGGCAGAGGGCGGGGGTGCCGATTCTCCGGAAAACGGCGGCTTTGCCGCCTCCCGGAGCCGGA CGCTTGGCAAGGGCTCCTGTGCCTTGGAAGCTTCTCCCCTTGGCTTCGGAGTCATGGGAATGACCTACAACCGCAGCCAG TCTCCCTCGCGTGAGCAGTGCATCCGGCTTCTTCATGAGGCCGTGGAGCGCGGAGTGACTCTTTTTGATACGGCCATCAT CTACGGCCCCCTGAGCAATGAACTTCTGGCCGGGGAAGCTCTTTCCCCCTTCAGGGGGAAGATCAGCGTCACTACCAAGT TCGGGCACGAAGTTATTAACGGAAAGGGGACGGGCCGCCAGGACAGCCGCCCGGAAACCATCCGGCGCTACTGCGACGAG TCGCTGCGCCGTTTGAAGGTGGACGCTATTGAATTATTCTACCAGCACCGCTTTGATCCCAGGATTCCCGTTGAAGATGT AGCGGGAACCATCTCCGAACTGGTCAAGGAAGGCAAGGTGCGGCGCTGGGGCATGTGCGAAGTCACTCCCGGTACAATTC GCAGGGCCCACGCCGTCCATCCCCTGACAGCCATTCAGAGTGAGTACCATCTCATGCACCGGGATGTTGAAAACAATGGC GTTCTGGATGTCTGCCGTGAACTGGGTATAGGCTTTGTCCCCTACAGCCCGCTCAACAGGGGATTCCTGGGGGGCTGCAT CAATGAATACACGCAATTTGACCCGAACAACGACAACCGCCAGACCCTGCCGCGTTTCACGCCGGAGGCCATGAGAGCCA ATATGCGTATTGTCAATATTCTGCAACAGTTTGGGAGGACGCGCGGCATGACTTCCTCCCAGGTTGCCCTGGGATGGCTG CTGCAAAAGGCTCCTTATATCGTACCCATTCCCGGCACCACTAAACTGTCCCATCTGGAAGAAAACCTGCACACGCTTGA TTTTACCTGCTCTCCGCAGGAGTGGGCGGAACTGGAGAACGCCGTAGCCGCCACACCCGTGACCGGAGCACGCTACAACG CGGAACAGCAAAGGCAAGTAGGGCATTGA
Upstream 100 bases:
>100_bases GGCGCTTCCTGAGATAAATTGTTGTATTCCCTTGTTGACTTCCAGTTGGTGGAACCCATATGCTCGGATGATATATCAAA ATTTCAACCATCAACGTTTA
Downstream 100 bases:
>100_bases CCCGATTTGTTTGCCGGGATAAACGGCAATCGCAACGGCGGCCTCCGCAGAACGTTCGTCAGGCGTTCCATACTATCCGG AATTCCTTGTTGATTCCGTT
Product: aldo/keto reductase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 382; Mature: 381
Protein sequence:
>382_residues MSMYKHYSDGRRRFLKMSALFGTSALISPAIARAEGGGADSPENGGFAASRSRTLGKGSCALEASPLGFGVMGMTYNRSQ SPSREQCIRLLHEAVERGVTLFDTAIIYGPLSNELLAGEALSPFRGKISVTTKFGHEVINGKGTGRQDSRPETIRRYCDE SLRRLKVDAIELFYQHRFDPRIPVEDVAGTISELVKEGKVRRWGMCEVTPGTIRRAHAVHPLTAIQSEYHLMHRDVENNG VLDVCRELGIGFVPYSPLNRGFLGGCINEYTQFDPNNDNRQTLPRFTPEAMRANMRIVNILQQFGRTRGMTSSQVALGWL LQKAPYIVPIPGTTKLSHLEENLHTLDFTCSPQEWAELENAVAATPVTGARYNAEQQRQVGH
Sequences:
>Translated_382_residues MSMYKHYSDGRRRFLKMSALFGTSALISPAIARAEGGGADSPENGGFAASRSRTLGKGSCALEASPLGFGVMGMTYNRSQ SPSREQCIRLLHEAVERGVTLFDTAIIYGPLSNELLAGEALSPFRGKISVTTKFGHEVINGKGTGRQDSRPETIRRYCDE SLRRLKVDAIELFYQHRFDPRIPVEDVAGTISELVKEGKVRRWGMCEVTPGTIRRAHAVHPLTAIQSEYHLMHRDVENNG VLDVCRELGIGFVPYSPLNRGFLGGCINEYTQFDPNNDNRQTLPRFTPEAMRANMRIVNILQQFGRTRGMTSSQVALGWL LQKAPYIVPIPGTTKLSHLEENLHTLDFTCSPQEWAELENAVAATPVTGARYNAEQQRQVGH >Mature_381_residues SMYKHYSDGRRRFLKMSALFGTSALISPAIARAEGGGADSPENGGFAASRSRTLGKGSCALEASPLGFGVMGMTYNRSQS PSREQCIRLLHEAVERGVTLFDTAIIYGPLSNELLAGEALSPFRGKISVTTKFGHEVINGKGTGRQDSRPETIRRYCDES LRRLKVDAIELFYQHRFDPRIPVEDVAGTISELVKEGKVRRWGMCEVTPGTIRRAHAVHPLTAIQSEYHLMHRDVENNGV LDVCRELGIGFVPYSPLNRGFLGGCINEYTQFDPNNDNRQTLPRFTPEAMRANMRIVNILQQFGRTRGMTSSQVALGWLL QKAPYIVPIPGTTKLSHLEENLHTLDFTCSPQEWAELENAVAATPVTGARYNAEQQRQVGH
Specific function: Unknown
COG id: COG0667
COG function: function code C; Predicted oxidoreductases (related to aryl-alcohol dehydrogenases)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the aldo/keto reductase 2 family [H]
Homologues:
Organism=Homo sapiens, GI27436966, Length=308, Percent_Identity=27.2727272727273, Blast_Score=84, Evalue=2e-16, Organism=Homo sapiens, GI27436962, Length=308, Percent_Identity=27.2727272727273, Blast_Score=84, Evalue=2e-16, Organism=Homo sapiens, GI27436964, Length=310, Percent_Identity=27.0967741935484, Blast_Score=84, Evalue=3e-16, Organism=Homo sapiens, GI27436969, Length=305, Percent_Identity=25.2459016393443, Blast_Score=80, Evalue=3e-15, Organism=Homo sapiens, GI4504825, Length=305, Percent_Identity=25.2459016393443, Blast_Score=80, Evalue=3e-15, Organism=Homo sapiens, GI27436971, Length=352, Percent_Identity=23.5795454545455, Blast_Score=75, Evalue=1e-13, Organism=Escherichia coli, GI87081735, Length=325, Percent_Identity=30.4615384615385, Blast_Score=131, Evalue=7e-32, Organism=Escherichia coli, GI1789375, Length=306, Percent_Identity=27.1241830065359, Blast_Score=121, Evalue=9e-29, Organism=Escherichia coli, GI1787674, Length=320, Percent_Identity=26.875, Blast_Score=107, Evalue=2e-24, Organism=Escherichia coli, GI1788070, Length=314, Percent_Identity=29.9363057324841, Blast_Score=102, Evalue=5e-23, Organism=Escherichia coli, GI1788081, Length=301, Percent_Identity=22.5913621262458, Blast_Score=85, Evalue=8e-18, Organism=Escherichia coli, GI1789199, Length=337, Percent_Identity=25.8160237388724, Blast_Score=72, Evalue=6e-14, Organism=Escherichia coli, GI48994888, Length=303, Percent_Identity=24.7524752475248, Blast_Score=72, Evalue=7e-14, Organism=Saccharomyces cerevisiae, GI6323998, Length=332, Percent_Identity=25.9036144578313, Blast_Score=106, Evalue=5e-24, Organism=Saccharomyces cerevisiae, GI6325384, Length=337, Percent_Identity=27.299703264095, Blast_Score=101, Evalue=2e-22, Organism=Saccharomyces cerevisiae, GI6319958, Length=299, Percent_Identity=24.7491638795987, Blast_Score=99, Evalue=1e-21, Organism=Saccharomyces cerevisiae, GI6322615, Length=254, Percent_Identity=24.4094488188976, Blast_Score=89, Evalue=2e-18, Organism=Saccharomyces cerevisiae, GI6319951, Length=348, Percent_Identity=22.9885057471264, Blast_Score=78, Evalue=2e-15, Organism=Saccharomyces cerevisiae, GI6325169, Length=338, Percent_Identity=20.7100591715976, Blast_Score=67, Evalue=5e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001395 - InterPro: IPR020471 - InterPro: IPR023210 [H]
Pfam domain/function: PF00248 Aldo_ket_red [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 42396; Mature: 42265
Theoretical pI: Translated: 8.65; Mature: 8.65
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSMYKHYSDGRRRFLKMSALFGTSALISPAIARAEGGGADSPENGGFAASRSRTLGKGSC CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC ALEASPLGFGVMGMTYNRSQSPSREQCIRLLHEAVERGVTLFDTAIIYGPLSNELLAGEA EEECCCCCEEEECEEECCCCCCCHHHHHHHHHHHHHCCCEEEEHHEEECCCCCCHHCCCC LSPFRGKISVTTKFGHEVINGKGTGRQDSRPETIRRYCDESLRRLKVDAIELFYQHRFDP CCCCCCEEEEEEHHCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC RIPVEDVAGTISELVKEGKVRRWGMCEVTPGTIRRAHAVHPLTAIQSEYHLMHRDVENNG CCCHHHHHHHHHHHHHCCCCCCCCCEEECHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCC VLDVCRELGIGFVPYSPLNRGFLGGCINEYTQFDPNNDNRQTLPRFTPEAMRANMRIVNI HHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHH LQQFGRTRGMTSSQVALGWLLQKAPYIVPIPGTTKLSHLEENLHTLDFTCSPQEWAELEN HHHHHHHCCCCHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHEEEEECCHHHHHHHHH AVAATPVTGARYNAEQQRQVGH HHHCCCCCCCCCCCHHHHHCCC >Mature Secondary Structure SMYKHYSDGRRRFLKMSALFGTSALISPAIARAEGGGADSPENGGFAASRSRTLGKGSC CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC ALEASPLGFGVMGMTYNRSQSPSREQCIRLLHEAVERGVTLFDTAIIYGPLSNELLAGEA EEECCCCCEEEECEEECCCCCCCHHHHHHHHHHHHHCCCEEEEHHEEECCCCCCHHCCCC LSPFRGKISVTTKFGHEVINGKGTGRQDSRPETIRRYCDESLRRLKVDAIELFYQHRFDP CCCCCCEEEEEEHHCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC RIPVEDVAGTISELVKEGKVRRWGMCEVTPGTIRRAHAVHPLTAIQSEYHLMHRDVENNG CCCHHHHHHHHHHHHHCCCCCCCCCEEECHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCC VLDVCRELGIGFVPYSPLNRGFLGGCINEYTQFDPNNDNRQTLPRFTPEAMRANMRIVNI HHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHH LQQFGRTRGMTSSQVALGWLLQKAPYIVPIPGTTKLSHLEENLHTLDFTCSPQEWAELEN HHHHHHHCCCCHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHEEEEECCHHHHHHHHH AVAATPVTGARYNAEQQRQVGH HHHCCCCCCCCCCCHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9274031; 9384377; 9106203 [H]