Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
---|---|
Accession | NC_010655 |
Length | 2,664,102 |
Click here to switch to the map view.
The map label for this gene is 187735634
Identifier: 187735634
GI number: 187735634
Start: 1361297
End: 1362100
Strand: Direct
Name: 187735634
Synonym: Amuc_1139
Alternate gene names: NA
Gene position: 1361297-1362100 (Clockwise)
Preceding gene: 187735633
Following gene: 187735635
Centisome position: 51.1
GC content: 54.98
Gene sequence:
>804_bases ATGCCCTGTCCGGGACAGCTTCGTGAAGAGCCGTTTATTCACTTTATCAAGAACCATAAGTATTTGAAAAACAAAATGAT GAATACAACAAAAACATGCGGGAATTCCAGTTCCCGGCCTCAGCGTTCGGAAAATTCCCTTTCCTGTCCCGTGGCGGATG CCGCGGCAGGCCCCTCTCATGAACCCCTGCTTCCCGTAGGCACGGTTACCGGAGATATCAGGAACAACGACATTGTCCTT CCCCGCCTGAACATTGTTCAAAGCGTAGGCGCCCTTTCCGGGATATTTCCCCCCGGCAGTATCATCCTCAACAGGGAGGT TGTTCTTTCCGACGGAAGCGTTCCTCTGGAGCTTTCCGTGCTTTCCGCACGCAAGCAGTTTATTGAAAAACTCCCCTTTG ATTCCGTGGAGAAGCCGGCCGTCTTCAATTCTCTGGAAGAAGTAATAGCCTCCGGAGGCACGGTCGGCAGAGAGCCGGGA AACCGGCCTTCTTTCGCTCCCGTTCTGCATGTGCAGGCGCTTTTCAAGGCTCCGGAGGGCGTGGATTATCCCTTTCCCCT GGAGTACGAAGGAGAGGCTTTCGGGCTGGCTGCCTGGTCCCTGCGCGGCATGGCTTATTACCTTGCGGGGCGCGACATCC TCACGGCTTCCAGATTTGCCCTGAGGAATGAAGTATTCGCCGGCAAGTGGAAGCTTACGACCAGGCTCAGGAGGCTGGAA CATAATGGCATTTTCATTCCCGCGCTGCGCAGTGCGGGCCGCAGTACACCGGAGTTCTCCTCCTTCATCAGGAGCATTGG TTAA
Upstream 100 bases:
>100_bases GGAGGAAAAATTCACTTTTTTAAGAAATGGGCGGCGAATTTCCGGAAACGCGGCAAGCAATCATAGTGAAGGCAGATGAA CGTTCTTTCTTTTCTGGCGC
Downstream 100 bases:
>100_bases ATTTCTTACCCTCCGCAACGAAGAGCAGCGCTCATGAGCAGTCCAATCAGGAGATTATTCGTCAACGGGTTCCCGAGCCT CTACGGAGGAGCGGGAACGG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 267; Mature: 266
Protein sequence:
>267_residues MPCPGQLREEPFIHFIKNHKYLKNKMMNTTKTCGNSSSRPQRSENSLSCPVADAAAGPSHEPLLPVGTVTGDIRNNDIVL PRLNIVQSVGALSGIFPPGSIILNREVVLSDGSVPLELSVLSARKQFIEKLPFDSVEKPAVFNSLEEVIASGGTVGREPG NRPSFAPVLHVQALFKAPEGVDYPFPLEYEGEAFGLAAWSLRGMAYYLAGRDILTASRFALRNEVFAGKWKLTTRLRRLE HNGIFIPALRSAGRSTPEFSSFIRSIG
Sequences:
>Translated_267_residues MPCPGQLREEPFIHFIKNHKYLKNKMMNTTKTCGNSSSRPQRSENSLSCPVADAAAGPSHEPLLPVGTVTGDIRNNDIVL PRLNIVQSVGALSGIFPPGSIILNREVVLSDGSVPLELSVLSARKQFIEKLPFDSVEKPAVFNSLEEVIASGGTVGREPG NRPSFAPVLHVQALFKAPEGVDYPFPLEYEGEAFGLAAWSLRGMAYYLAGRDILTASRFALRNEVFAGKWKLTTRLRRLE HNGIFIPALRSAGRSTPEFSSFIRSIG >Mature_266_residues PCPGQLREEPFIHFIKNHKYLKNKMMNTTKTCGNSSSRPQRSENSLSCPVADAAAGPSHEPLLPVGTVTGDIRNNDIVLP RLNIVQSVGALSGIFPPGSIILNREVVLSDGSVPLELSVLSARKQFIEKLPFDSVEKPAVFNSLEEVIASGGTVGREPGN RPSFAPVLHVQALFKAPEGVDYPFPLEYEGEAFGLAAWSLRGMAYYLAGRDILTASRFALRNEVFAGKWKLTTRLRRLEH NGIFIPALRSAGRSTPEFSSFIRSIG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29175; Mature: 29044
Theoretical pI: Translated: 9.46; Mature: 9.46
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPCPGQLREEPFIHFIKNHKYLKNKMMNTTKTCGNSSSRPQRSENSLSCPVADAAAGPSH CCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHCCCCCCC EPLLPVGTVTGDIRNNDIVLPRLNIVQSVGALSGIFPPGSIILNREVVLSDGSVPLELSV CCCEEECCEECCCCCCCEEECHHHHHHHHHHHHCCCCCCCEEEECEEEEECCCCCEEHHH LSARKQFIEKLPFDSVEKPAVFNSLEEVIASGGTVGREPGNRPSFAPVLHVQALFKAPEG HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCC VDYPFPLEYEGEAFGLAAWSLRGMAYYLAGRDILTASRFALRNEVFAGKWKLTTRLRRLE CCCCCCCCCCCCEEEEHHHHHHCEEEEECCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHH HNGIFIPALRSAGRSTPEFSSFIRSIG CCCEEEECHHHCCCCCHHHHHHHHHCC >Mature Secondary Structure PCPGQLREEPFIHFIKNHKYLKNKMMNTTKTCGNSSSRPQRSENSLSCPVADAAAGPSH CCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHCCCCCCC EPLLPVGTVTGDIRNNDIVLPRLNIVQSVGALSGIFPPGSIILNREVVLSDGSVPLELSV CCCEEECCEECCCCCCCEEECHHHHHHHHHHHHCCCCCCCEEEECEEEEECCCCCEEHHH LSARKQFIEKLPFDSVEKPAVFNSLEEVIASGGTVGREPGNRPSFAPVLHVQALFKAPEG HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCC VDYPFPLEYEGEAFGLAAWSLRGMAYYLAGRDILTASRFALRNEVFAGKWKLTTRLRRLE CCCCCCCCCCCCEEEEHHHHHHCEEEEECCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHH HNGIFIPALRSAGRSTPEFSSFIRSIG CCCEEEECHHHCCCCCHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA