Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is 187735635
Identifier: 187735635
GI number: 187735635
Start: 1362134
End: 1363177
Strand: Direct
Name: 187735635
Synonym: Amuc_1140
Alternate gene names: NA
Gene position: 1362134-1363177 (Clockwise)
Preceding gene: 187735634
Following gene: 187735636
Centisome position: 51.13
GC content: 58.43
Gene sequence:
>1044_bases ATGAGCAGTCCAATCAGGAGATTATTCGTCAACGGGTTCCCGAGCCTCTACGGAGGAGCGGGAACGGAACTTCACCACCA GATCATTGTCTGGCGCAAGATGGGCGTGGAAGTCCATCTCATCCCGTCCTGGGATTACCACGGGGAGCCTCTTTACAACG AGATGGTTTCCCTGGGCGTTATCATGCACGCCCCAGCGGACTGGTCGGCTGTCCAACCCGGCGACCCCGTGCTCGGTTTC TGCAATGCCGGCTTCCTCAACGCCTTGCCGGAAATACGAAGGCATACGAAACGCACAGTTTTCATCAACTGCATGACGTG GCTTTTCCCCAGGGAAAAGGAGGCCATGCAAAAGGGGGAAATCGCCATGTTCCTCTATCAGAATGAAGCCGTCCGCCAGG AAGCCATGCCCGTGCTGCGCAAGCTCAACGGCGACCCGCAAGTGCAGTTCCTGACCTTCAGGCCCTATTTCCATGCGGAA TCCTTTCCCTTTATCCGGGAACGCGATGAGGATTTCTTCGGTTGCGGGCGCATCTCCCGCCAGGATGCCGACAAATTCGC GGCCAACACCCTGCATATCTACGGCGCATTCGTATCCCCCGTGCAGAAGCGCGGCCTTTTCCTCGGTTTTGACAAGAGGA GCGAAGCCAAGATAGGCCGGCCCTTCGACTGGATTCGGATTGCCCGCAATCAAAGGGAAGTTTCCCAGCAGGATTTTTAT AGGCACAGCCGGATCATCCTCCAGCCGACGGATACGACGGAGAACTGGCCCCGCATCGGCTTTGAGGCGATGGCCAGCGG AAGCGTGCTCATTGTGGACAACCGGGGCGGGTGGCGGCAGATGGTGGAGCACGGCAAAACAGGATGGCTGTGCAGCAACG AAAGGGATTTCATCTACTACGCTTCCAAAATGGCCTGTGAACCGAATCTTCGCGATGACATGGCGGAGGCGGCCCGGGCG CGCGGCCTGGAGCTGGGCGGGCTGGATGTTTCCCTGGAGAGCTGGAAGGAAGTGCTGGAGGCGATGGCAAGACTCCCGGA ATGA
Upstream 100 bases:
>100_bases TCCCGCGCTGCGCAGTGCGGGCCGCAGTACACCGGAGTTCTCCTCCTTCATCAGGAGCATTGGTTAAATTTCTTACCCTC CGCAACGAAGAGCAGCGCTC
Downstream 100 bases:
>100_bases ACATGGAACGGAAAACCGGCCTTATGAATAAAAAATATGTTTCCCCGTGTTTCCTGCCCGGCATGCGGCTGGGCAACATC ATGTTCACGCTGGCGGCCGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 347; Mature: 346
Protein sequence:
>347_residues MSSPIRRLFVNGFPSLYGGAGTELHHQIIVWRKMGVEVHLIPSWDYHGEPLYNEMVSLGVIMHAPADWSAVQPGDPVLGF CNAGFLNALPEIRRHTKRTVFINCMTWLFPREKEAMQKGEIAMFLYQNEAVRQEAMPVLRKLNGDPQVQFLTFRPYFHAE SFPFIRERDEDFFGCGRISRQDADKFAANTLHIYGAFVSPVQKRGLFLGFDKRSEAKIGRPFDWIRIARNQREVSQQDFY RHSRIILQPTDTTENWPRIGFEAMASGSVLIVDNRGGWRQMVEHGKTGWLCSNERDFIYYASKMACEPNLRDDMAEAARA RGLELGGLDVSLESWKEVLEAMARLPE
Sequences:
>Translated_347_residues MSSPIRRLFVNGFPSLYGGAGTELHHQIIVWRKMGVEVHLIPSWDYHGEPLYNEMVSLGVIMHAPADWSAVQPGDPVLGF CNAGFLNALPEIRRHTKRTVFINCMTWLFPREKEAMQKGEIAMFLYQNEAVRQEAMPVLRKLNGDPQVQFLTFRPYFHAE SFPFIRERDEDFFGCGRISRQDADKFAANTLHIYGAFVSPVQKRGLFLGFDKRSEAKIGRPFDWIRIARNQREVSQQDFY RHSRIILQPTDTTENWPRIGFEAMASGSVLIVDNRGGWRQMVEHGKTGWLCSNERDFIYYASKMACEPNLRDDMAEAARA RGLELGGLDVSLESWKEVLEAMARLPE >Mature_346_residues SSPIRRLFVNGFPSLYGGAGTELHHQIIVWRKMGVEVHLIPSWDYHGEPLYNEMVSLGVIMHAPADWSAVQPGDPVLGFC NAGFLNALPEIRRHTKRTVFINCMTWLFPREKEAMQKGEIAMFLYQNEAVRQEAMPVLRKLNGDPQVQFLTFRPYFHAES FPFIRERDEDFFGCGRISRQDADKFAANTLHIYGAFVSPVQKRGLFLGFDKRSEAKIGRPFDWIRIARNQREVSQQDFYR HSRIILQPTDTTENWPRIGFEAMASGSVLIVDNRGGWRQMVEHGKTGWLCSNERDFIYYASKMACEPNLRDDMAEAARAR GLELGGLDVSLESWKEVLEAMARLPE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39879; Mature: 39748
Theoretical pI: Translated: 7.31; Mature: 7.31
Prosite motif: PS00687 ALDEHYDE_DEHYDR_GLU
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSPIRRLFVNGFPSLYGGAGTELHHQIIVWRKMGVEVHLIPSWDYHGEPLYNEMVSLGV CCCHHHHHHHCCCCHHCCCCCCHHHHEEEEEEECCEEEEEEECCCCCCCHHHHHHHHHCE IMHAPADWSAVQPGDPVLGFCNAGFLNALPEIRRHTKRTVFINCMTWLFPREKEAMQKGE EEECCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHCCCEEEEEEHHHHCCCHHHHHCCCC IAMFLYQNEAVRQEAMPVLRKLNGDPQVQFLTFRPYFHAESFPFIRERDEDFFGCGRISR EEEEEECCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCHHHCCCCCCCCCCCCCH QDADKFAANTLHIYGAFVSPVQKRGLFLGFDKRSEAKIGRPFDWIRIARNQREVSQQDFY HHHHHHHHCEEEEEHHHHHHHHHCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHH RHSRIILQPTDTTENWPRIGFEAMASGSVLIVDNRGGWRQMVEHGKTGWLCSNERDFIYY HHCEEEEEECCCCCCCCCCCHHHHCCCCEEEEECCCCHHHHHHCCCCCEEECCCCCEEEE ASKMACEPNLRDDMAEAARARGLELGGLDVSLESWKEVLEAMARLPE EEEECCCCCCHHHHHHHHHHCCCEECCCCCCHHHHHHHHHHHHCCCC >Mature Secondary Structure SSPIRRLFVNGFPSLYGGAGTELHHQIIVWRKMGVEVHLIPSWDYHGEPLYNEMVSLGV CCHHHHHHHCCCCHHCCCCCCHHHHEEEEEEECCEEEEEEECCCCCCCHHHHHHHHHCE IMHAPADWSAVQPGDPVLGFCNAGFLNALPEIRRHTKRTVFINCMTWLFPREKEAMQKGE EEECCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHCCCEEEEEEHHHHCCCHHHHHCCCC IAMFLYQNEAVRQEAMPVLRKLNGDPQVQFLTFRPYFHAESFPFIRERDEDFFGCGRISR EEEEEECCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCHHHCCCCCCCCCCCCCH QDADKFAANTLHIYGAFVSPVQKRGLFLGFDKRSEAKIGRPFDWIRIARNQREVSQQDFY HHHHHHHHCEEEEEHHHHHHHHHCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHH RHSRIILQPTDTTENWPRIGFEAMASGSVLIVDNRGGWRQMVEHGKTGWLCSNERDFIYY HHCEEEEEECCCCCCCCCCCHHHHCCCCEEEEECCCCHHHHHHCCCCCEEECCCCCEEEE ASKMACEPNLRDDMAEAARARGLELGGLDVSLESWKEVLEAMARLPE EEEECCCCCCHHHHHHHHHHCCCEECCCCCCHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA