Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
---|---|
Accession | NC_010655 |
Length | 2,664,102 |
Click here to switch to the map view.
The map label for this gene is 187735610
Identifier: 187735610
GI number: 187735610
Start: 1333195
End: 1334292
Strand: Direct
Name: 187735610
Synonym: Amuc_1115
Alternate gene names: NA
Gene position: 1333195-1334292 (Clockwise)
Preceding gene: 187735607
Following gene: 187735612
Centisome position: 50.04
GC content: 56.92
Gene sequence:
>1098_bases ATGATATTCGGAATGGCGAGACATGGAAAAAACCAGAAGGAATATCTGGCTGCGGAAATGTTATTGAAAGGTAGCGGATT GAATATGCTGGATGCTGCCAGCCTCGCAGTAGAGCTGCTGAGCCTGTGCGGAGGCAGCCGCAGCATGCGCCGGGCCAGAA AGGCAATTTTTCTGGGTGCTGAGGAATTGAGGAAAGGGGAAAGGACGGTTTCCTTTTCCGCCGCCGTGGAAGAAATGCTG AAGGCGAAGCGTAATCTTCGCCCTACGACGTTGCGCGATATCAGGTATTTCACCGGAGCTTTGATGCGGAGGTGTCCGGA ATTGAAAGGTTTTCCGGTCCGGAAGCTGACGCCGGAGCATTGCGCCCATTTTCTGGAGGCTGCTTTTACATCCCACAGGC AGCGTTACAAGGGCCGGGCGGTGATGAGCGGCGTTTTGTCCTTTTCCCTGCGGCGCGGATGGTGCGGGGAAAATCCTGTC GCCCGTGTGGACTCTCCTTCGTTTCGTGAACGGACGATTGCCATTTTGGCTCCGGAAGAGATAGGAAGCCTTCGGACGGT GGTGGAAGCTCCGGAATTTCGTGACTGCGCTCCGGCTGTTTGGGTAATGTTGTACGCCGGAATCAGGCCGGGGGAGGTGG TGCGCCTCCATTGGCGTGATGTGGATTTGGAGGAGAGGGTCATTTCCGTAAGGTCCCGAACCAGTAAAACGGGGGGAATC AGGCATGTCACCATTCATGCTGTGCTCTGGCGGCTTCTGGCGGGATACGGAGCAGGGGGGCCGGCCGGACTGTTATGTCC TCCCAATTGGCCGGTGCGCTGGAGGCTGCTCCGGAAAAAAGCCGGATGGGGGCTGCACAACCGCTTTGGAGAATGGAGTG CGGACGCGCTGAGGCATACTTATGCTTCCTATCACGCCAAATGGTTCAGGGATTTTTCCCTGCTTCAGCTGGAGATGGGG CATCGTTCCTCCTCCCTGTTGCGGGAGCGGTACCTGAACATGGAAGGGGTGAGCCGCGACAGGGCACGCCTTTTCTGGGA AGCGCCGGAACATGGCTGGAACAACAAAACCGGCATTGCAGGAACGGACTTTCTATGA
Upstream 100 bases:
>100_bases AATTGTCCGTAAAAAGAGATTAATGGATAAAAATATTGTAATTTTTTCTTGATAACAGGATTAACAATCCTGTGATGTAT CAGGTATTAATATAAAAAAC
Downstream 100 bases:
>100_bases AGGGACGGCTGTTTGACTGCCGCAGCCGGAAAAGGGCGGCATGAGGGAGTCCCCATGGTTATGCCCTGGGCAGGAAGTAG CCGCGCTGTTTTTCTGAGAT
Product: integrase family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 365; Mature: 365
Protein sequence:
>365_residues MIFGMARHGKNQKEYLAAEMLLKGSGLNMLDAASLAVELLSLCGGSRSMRRARKAIFLGAEELRKGERTVSFSAAVEEML KAKRNLRPTTLRDIRYFTGALMRRCPELKGFPVRKLTPEHCAHFLEAAFTSHRQRYKGRAVMSGVLSFSLRRGWCGENPV ARVDSPSFRERTIAILAPEEIGSLRTVVEAPEFRDCAPAVWVMLYAGIRPGEVVRLHWRDVDLEERVISVRSRTSKTGGI RHVTIHAVLWRLLAGYGAGGPAGLLCPPNWPVRWRLLRKKAGWGLHNRFGEWSADALRHTYASYHAKWFRDFSLLQLEMG HRSSSLLRERYLNMEGVSRDRARLFWEAPEHGWNNKTGIAGTDFL
Sequences:
>Translated_365_residues MIFGMARHGKNQKEYLAAEMLLKGSGLNMLDAASLAVELLSLCGGSRSMRRARKAIFLGAEELRKGERTVSFSAAVEEML KAKRNLRPTTLRDIRYFTGALMRRCPELKGFPVRKLTPEHCAHFLEAAFTSHRQRYKGRAVMSGVLSFSLRRGWCGENPV ARVDSPSFRERTIAILAPEEIGSLRTVVEAPEFRDCAPAVWVMLYAGIRPGEVVRLHWRDVDLEERVISVRSRTSKTGGI RHVTIHAVLWRLLAGYGAGGPAGLLCPPNWPVRWRLLRKKAGWGLHNRFGEWSADALRHTYASYHAKWFRDFSLLQLEMG HRSSSLLRERYLNMEGVSRDRARLFWEAPEHGWNNKTGIAGTDFL >Mature_365_residues MIFGMARHGKNQKEYLAAEMLLKGSGLNMLDAASLAVELLSLCGGSRSMRRARKAIFLGAEELRKGERTVSFSAAVEEML KAKRNLRPTTLRDIRYFTGALMRRCPELKGFPVRKLTPEHCAHFLEAAFTSHRQRYKGRAVMSGVLSFSLRRGWCGENPV ARVDSPSFRERTIAILAPEEIGSLRTVVEAPEFRDCAPAVWVMLYAGIRPGEVVRLHWRDVDLEERVISVRSRTSKTGGI RHVTIHAVLWRLLAGYGAGGPAGLLCPPNWPVRWRLLRKKAGWGLHNRFGEWSADALRHTYASYHAKWFRDFSLLQLEMG HRSSSLLRERYLNMEGVSRDRARLFWEAPEHGWNNKTGIAGTDFL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 41428; Mature: 41428
Theoretical pI: Translated: 10.88; Mature: 10.88
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIFGMARHGKNQKEYLAAEMLLKGSGLNMLDAASLAVELLSLCGGSRSMRRARKAIFLGA CCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCH EELRKGERTVSFSAAVEEMLKAKRNLRPTTLRDIRYFTGALMRRCPELKGFPVRKLTPEH HHHHCCCCEEHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHH CAHFLEAAFTSHRQRYKGRAVMSGVLSFSLRRGWCGENPVARVDSPSFRERTIAILAPEE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECHHH IGSLRTVVEAPEFRDCAPAVWVMLYAGIRPGEVVRLHWRDVDLEERVISVRSRTSKTGGI HHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCE RHVTIHAVLWRLLAGYGAGGPAGLLCPPNWPVRWRLLRKKAGWGLHNRFGEWSADALRHT EEEHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHCCCCHHHHHHHH YASYHAKWFRDFSLLQLEMGHRSSSLLRERYLNMEGVSRDRARLFWEAPEHGWNNKTGIA HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHHEEEECCCCCCCCCCCCC GTDFL CCCCC >Mature Secondary Structure MIFGMARHGKNQKEYLAAEMLLKGSGLNMLDAASLAVELLSLCGGSRSMRRARKAIFLGA CCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCH EELRKGERTVSFSAAVEEMLKAKRNLRPTTLRDIRYFTGALMRRCPELKGFPVRKLTPEH HHHHCCCCEEHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHH CAHFLEAAFTSHRQRYKGRAVMSGVLSFSLRRGWCGENPVARVDSPSFRERTIAILAPEE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECHHH IGSLRTVVEAPEFRDCAPAVWVMLYAGIRPGEVVRLHWRDVDLEERVISVRSRTSKTGGI HHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCE RHVTIHAVLWRLLAGYGAGGPAGLLCPPNWPVRWRLLRKKAGWGLHNRFGEWSADALRHT EEEHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHCCCCHHHHHHHH YASYHAKWFRDFSLLQLEMGHRSSSLLRERYLNMEGVSRDRARLFWEAPEHGWNNKTGIA HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHHEEEECCCCCCCCCCCCC GTDFL CCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA