Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is gcp [H]
Identifier: 187735544
GI number: 187735544
Start: 1251501
End: 1252583
Strand: Reverse
Name: gcp [H]
Synonym: Amuc_1049
Alternate gene names: 187735544
Gene position: 1252583-1251501 (Counterclockwise)
Preceding gene: 187735545
Following gene: 187735543
Centisome position: 47.02
GC content: 58.91
Gene sequence:
>1083_bases ATGCCGGAATCCCTTACCGTTCTGGGAATAGAATCCTCCTGTGATGAAACGGCAGTCGCCATCCTGCGTTCTGCCGGAGA GGAAAAAGCTCCGGAAATACTCTCCTCCGTCATCTCCTCCCAAATTGCCATTCACCGCCAGCACGGCGGCGTAGTGCCGG AACTGGCTTCCCGCAACCATTCAGCGGATCTTCCCGGAATCATCCGAACCGCGTGCCGCGAAGCCGGAACAGCTCCTGCG GACATTGACGTCTTCGGCGCTACGGGAGGCCCCGGCCTGGTAGCTGCACTTCTGGTAGGCAACAGCACGGCCAAGGCTCT GGCTCTGGCAGCGGGCAGGCCCTTCGTCTCCGTCAATCATCTGGAAGGCCATCTGCTTTCCCCCTTCCTCAAACGCCCCG GCGGTCCCGTTCCCCATCTGGGCATGGTCGTTTCCGGAGGCCACACCCTTTTTGTGGATGTGCGCGGCGTAGGGAACTAC CGCCTGCTGGGCCGCTCTCTGGACGACGCAGCAGGGGAAGCCTTTGACAAGGTAGGCAAAATGCTAGGCCTTCCCTATCC CGGAGGGCCGGAAATCGACCGCTTGGCGGCGGAAGGCGACCCGGAAGCCTTTTCTTTCCCCCGGGCCCTGATGAAAGAGC ATACAGCCAACGTATCTTTCTCCGGCCTGAAAACGGCCGTTCTCTATACACTGCCCAAAATTACGAAAAACGGCGATCCT CACGGCCTGCCCCGGCAAACTCTGCGCGACCTCTGCGCTTCTTTCCAGCGGGCCGTGACGGACGTCCTGATTCACAAGGC GCTGAAGGCCTTGCGCGCCTCCGGTCACCGCACCCTTTCCATCTCCGGGGGCGTCTCCTGCAACAGGGAGCTGCGTTCCC GCCTGAAAACCGCCTGTGACCGTGAAAAAGTGAAACTGGTTCTCCCGGACTTCGACCTGACGACGGATAATGCCGCCATG ATCGCTTATGTCACCTGTCTCAAAGCCCGAAGAGGACTGTTCCATTCTCTGGATGAAGACGTTGACCCCAATCTTAAATT GACGGAGGATTTAAACAGATCCAAACATTCAACACATTCCTGA
Upstream 100 bases:
>100_bases AAAATGCGGACACCGTTACCATTACCAGGGAAACGGTTACCGGCAACAAGCCGGCCCAAATCCACCAGTCCTCCTAACCT CCCCTCCCTGTTCTTCCTCC
Downstream 100 bases:
>100_bases TAAATATATTATACATGAACCCCCTGTATTTGCGGCATAAAGCTGAAAAAATGTTCATGTTTTCATTGACATCCTGCATC CAAAAACGTAACATAGCGTC
Product: metalloendopeptidase, glycoprotease family
Products: NA
Alternate protein names: Glycoprotease [H]
Number of amino acids: Translated: 360; Mature: 359
Protein sequence:
>360_residues MPESLTVLGIESSCDETAVAILRSAGEEKAPEILSSVISSQIAIHRQHGGVVPELASRNHSADLPGIIRTACREAGTAPA DIDVFGATGGPGLVAALLVGNSTAKALALAAGRPFVSVNHLEGHLLSPFLKRPGGPVPHLGMVVSGGHTLFVDVRGVGNY RLLGRSLDDAAGEAFDKVGKMLGLPYPGGPEIDRLAAEGDPEAFSFPRALMKEHTANVSFSGLKTAVLYTLPKITKNGDP HGLPRQTLRDLCASFQRAVTDVLIHKALKALRASGHRTLSISGGVSCNRELRSRLKTACDREKVKLVLPDFDLTTDNAAM IAYVTCLKARRGLFHSLDEDVDPNLKLTEDLNRSKHSTHS
Sequences:
>Translated_360_residues MPESLTVLGIESSCDETAVAILRSAGEEKAPEILSSVISSQIAIHRQHGGVVPELASRNHSADLPGIIRTACREAGTAPA DIDVFGATGGPGLVAALLVGNSTAKALALAAGRPFVSVNHLEGHLLSPFLKRPGGPVPHLGMVVSGGHTLFVDVRGVGNY RLLGRSLDDAAGEAFDKVGKMLGLPYPGGPEIDRLAAEGDPEAFSFPRALMKEHTANVSFSGLKTAVLYTLPKITKNGDP HGLPRQTLRDLCASFQRAVTDVLIHKALKALRASGHRTLSISGGVSCNRELRSRLKTACDREKVKLVLPDFDLTTDNAAM IAYVTCLKARRGLFHSLDEDVDPNLKLTEDLNRSKHSTHS >Mature_359_residues PESLTVLGIESSCDETAVAILRSAGEEKAPEILSSVISSQIAIHRQHGGVVPELASRNHSADLPGIIRTACREAGTAPAD IDVFGATGGPGLVAALLVGNSTAKALALAAGRPFVSVNHLEGHLLSPFLKRPGGPVPHLGMVVSGGHTLFVDVRGVGNYR LLGRSLDDAAGEAFDKVGKMLGLPYPGGPEIDRLAAEGDPEAFSFPRALMKEHTANVSFSGLKTAVLYTLPKITKNGDPH GLPRQTLRDLCASFQRAVTDVLIHKALKALRASGHRTLSISGGVSCNRELRSRLKTACDREKVKLVLPDFDLTTDNAAMI AYVTCLKARRGLFHSLDEDVDPNLKLTEDLNRSKHSTHS
Specific function: Could Be A Metalloprotease. [C]
COG id: COG0533
COG function: function code O; Metal-dependent proteases with possible chaperone activity
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase M22 family [H]
Homologues:
Organism=Homo sapiens, GI116812636, Length=368, Percent_Identity=30.4347826086957, Blast_Score=147, Evalue=1e-35, Organism=Homo sapiens, GI8923380, Length=319, Percent_Identity=28.2131661442006, Blast_Score=107, Evalue=2e-23, Organism=Escherichia coli, GI1789445, Length=345, Percent_Identity=42.6086956521739, Blast_Score=262, Evalue=2e-71, Organism=Caenorhabditis elegans, GI17557464, Length=336, Percent_Identity=33.9285714285714, Blast_Score=151, Evalue=6e-37, Organism=Caenorhabditis elegans, GI71995670, Length=324, Percent_Identity=28.7037037037037, Blast_Score=109, Evalue=3e-24, Organism=Saccharomyces cerevisiae, GI6320099, Length=341, Percent_Identity=30.4985337243402, Blast_Score=140, Evalue=3e-34, Organism=Saccharomyces cerevisiae, GI6322891, Length=349, Percent_Identity=25.7879656160458, Blast_Score=89, Evalue=9e-19, Organism=Drosophila melanogaster, GI20129063, Length=338, Percent_Identity=31.6568047337278, Blast_Score=153, Evalue=2e-37, Organism=Drosophila melanogaster, GI21357207, Length=341, Percent_Identity=27.5659824046921, Blast_Score=114, Evalue=8e-26,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR022450 - InterPro: IPR000905 - InterPro: IPR017861 [H]
Pfam domain/function: PF00814 Peptidase_M22 [H]
EC number: =3.4.24.57 [H]
Molecular weight: Translated: 38201; Mature: 38070
Theoretical pI: Translated: 8.18; Mature: 8.18
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPESLTVLGIESSCDETAVAILRSAGEEKAPEILSSVISSQIAIHRQHGGVVPELASRNH CCCCEEEEEECCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCC SADLPGIIRTACREAGTAPADIDVFGATGGPGLVAALLVGNSTAKALALAAGRPFVSVNH CCCCCHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHCCCHHHHHHHCCCCCEEEECC LEGHLLSPFLKRPGGPVPHLGMVVSGGHTLFVDVRGVGNYRLLGRSLDDAAGEAFDKVGK CCCHHHHHHHHCCCCCCCCCCEEEECCEEEEEEEECCCCEEEECCCHHHHHHHHHHHHHH MLGLPYPGGPEIDRLAAEGDPEAFSFPRALMKEHTANVSFSGLKTAVLYTLPKITKNGDP HHCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCC HGLPRQTLRDLCASFQRAVTDVLIHKALKALRASGHRTLSISGGVSCNRELRSRLKTACD CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHC REKVKLVLPDFDLTTDNAAMIAYVTCLKARRGLFHSLDEDVDPNLKLTEDLNRSKHSTHS CCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEHHHHHHCCCCCCC >Mature Secondary Structure PESLTVLGIESSCDETAVAILRSAGEEKAPEILSSVISSQIAIHRQHGGVVPELASRNH CCCEEEEEECCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCC SADLPGIIRTACREAGTAPADIDVFGATGGPGLVAALLVGNSTAKALALAAGRPFVSVNH CCCCCHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHCCCHHHHHHHCCCCCEEEECC LEGHLLSPFLKRPGGPVPHLGMVVSGGHTLFVDVRGVGNYRLLGRSLDDAAGEAFDKVGK CCCHHHHHHHHCCCCCCCCCCEEEECCEEEEEEEECCCCEEEECCCHHHHHHHHHHHHHH MLGLPYPGGPEIDRLAAEGDPEAFSFPRALMKEHTANVSFSGLKTAVLYTLPKITKNGDP HHCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCC HGLPRQTLRDLCASFQRAVTDVLIHKALKALRASGHRTLSISGGVSCNRELRSRLKTACD CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHC REKVKLVLPDFDLTTDNAAMIAYVTCLKARRGLFHSLDEDVDPNLKLTEDLNRSKHSTHS CCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA