Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is yccM [C]
Identifier: 187735463
GI number: 187735463
Start: 1146758
End: 1148524
Strand: Direct
Name: yccM [C]
Synonym: Amuc_0962
Alternate gene names: 187735463
Gene position: 1146758-1148524 (Clockwise)
Preceding gene: 187735462
Following gene: 187735464
Centisome position: 43.04
GC content: 60.05
Gene sequence:
>1767_bases ATGATAAATATGTCAGTTATCAAAGCCTTTCTCGTCAGTCCTCTGAAGTGGCTCCGCGTGACGGTGGCCGTCATTTTCTT TATTGGGATTGCATACGCTTTTCTGCACCACATTCCCGCGTGGAACGTGCCGAACATGACGGGGGGCGGAGAGGGGATGG AAGATTCCTTTTCCCTGGCGCGGTGGCAATTTGTGCCGTCCGTGCTGGGGACCCTGAGCGGGGCAGCCGTTTCCGCCGTG ATTCTGGGGGTTTTGCTGCTGCTTACGCTGCTGTTCGGCCGCGTATACTGTTCCTTCATCTGCCCGCTGGGGATTCTCCA GGATATTGTCTTCAGAATCCGCCGCTGGCTGGCGCCGAAGCGTTTCCTGAAATTCTCCCGGCCTGTGCCGTGGGTGCGGT ATGGGGTGCTGGCATTGCTGGCCGCCTGCTGCGTGACGGGGCTGGCCGGTCTGTCTCTGAATTGGCTGGACCCTTACAGC ATTTTCGGGCGCATCATGTATGTGCTGGCATGGCCGGCCGCCATTTGGAGCAATAACCTGCTGGCGGCGGACAGTTCTTC TGCGGACCTGGTCCAGATGGATTATTTCCCCGCGGCTTTCCCGGTTCTGCTGGCTTCCGCCGGCATGCTCGGCCTGGTGG CCGTCATGAGTGCCTGGAAGGGGCGCCTGTATTGCAATACGGTATGCCCCGTCGGCACGCTGCTTGGCCTGCTTTCCCGT ATCTCCCTTTTCCGGCTGGGCTTTGATCCCGCCTCCTGCAAGAAATGCGGCAAATGCGTCAAATCCTGCAAGGCGCAATG CCTGAACCTGAAGGAATACAAAATAGACTCCTCACGCTGCGTGGCGTGCTACGATTGCGTGCGCTCCTGCAGTGAGGGGG GAATACGCTACCGCTGGTTTACCAGGGCCCGTCAACTGGTTCCGGCCCAAAAAAAGAAGGCTTCCCCGGATACCGCCCTC TCTTCTTCCGCCGCAGTTCCCTCCATTGCCGGGAGTTCCCGCCGCCAGTTCCTGGAGGCTACTGCGGCCGGGCTGGCTAC GGCCGCCCTTTCCGGATGCCGGGGAGATGCCGCCCGGAAGCTGGACCCCACCCAGTGCGTTCTTCCTCCCGGAGCCGGTT CCCTGGAACGTTTTCTGGATATCTGCACCGGCTGCCAGATGTGCGTTGCCAACTGCCCCACCCATGTGCTTCAGCCTTCA TACCTGCAGCTTGGCCTGAAGGGATTCATGAAACCCCGGATGGATTTTGCCACCAAATACTGCCTTTATGATTGCCACCG GTGTGCGGAAGTCTGCCCCACGGGGGCCATACGCAGGATGCCTGTTACCGCGGAAAGGGATACTGAGGGAATAACAAAAG ATACTACGCGCATTGCCGTGGCCCGGTTTTACGTCTGCCGCTGCCTGGTTGCCCGGGAGGACATGGATTGCGGAGCCTGT ACGGAGCATTGCCCCACCAAGGCCCTTTACACGGTGCCCTATATCGGGCGTGACGGCCAGGAGCACCGCCTGCCCAGGCT GGATCCTTCCCTGTGCATCGGCTGCGGCGCGTGCGAACACGCCTGTCCCGTTACCGCGGAACGGCCTGAGGAACGCGAAC GCCGGAACTCCTGCGATTTGTGCGAGGAAAAATGCGAGTTCGGAAGGCGGCGGGAAATGCCCCCCCGGGCGTTGGTGGTC CGTGCCGTAAATCCCCAGCAGAAAGCTGTTAAAAAGTTTGAGGACAAAGCTGTGGATCCGGTGGGGGATGCGGATTTTCC GTTTTGA
Upstream 100 bases:
>100_bases GGCTTAATATCCGCCGTATCAGCATGGCCTGACGCGGCGGCTCCTTCTCCCGTCTGCGGATGACGCGGTGGGGGGCCAAC TTTCCGCCTCCGGCGGGTTT
Downstream 100 bases:
>100_bases AAACGGCTGGCGGTTTGGAAGATGATGAAATAAACGCTCCCGGAGGCTTCAAACCTCCCTTTCGGGAGGGCTGTGTCTGT CCATCCGGTTTTTCGGGGGA
Product: 4Fe-4S ferredoxin iron-sulfur binding domain protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 588; Mature: 588
Protein sequence:
>588_residues MINMSVIKAFLVSPLKWLRVTVAVIFFIGIAYAFLHHIPAWNVPNMTGGGEGMEDSFSLARWQFVPSVLGTLSGAAVSAV ILGVLLLLTLLFGRVYCSFICPLGILQDIVFRIRRWLAPKRFLKFSRPVPWVRYGVLALLAACCVTGLAGLSLNWLDPYS IFGRIMYVLAWPAAIWSNNLLAADSSSADLVQMDYFPAAFPVLLASAGMLGLVAVMSAWKGRLYCNTVCPVGTLLGLLSR ISLFRLGFDPASCKKCGKCVKSCKAQCLNLKEYKIDSSRCVACYDCVRSCSEGGIRYRWFTRARQLVPAQKKKASPDTAL SSSAAVPSIAGSSRRQFLEATAAGLATAALSGCRGDAARKLDPTQCVLPPGAGSLERFLDICTGCQMCVANCPTHVLQPS YLQLGLKGFMKPRMDFATKYCLYDCHRCAEVCPTGAIRRMPVTAERDTEGITKDTTRIAVARFYVCRCLVAREDMDCGAC TEHCPTKALYTVPYIGRDGQEHRLPRLDPSLCIGCGACEHACPVTAERPEERERRNSCDLCEEKCEFGRRREMPPRALVV RAVNPQQKAVKKFEDKAVDPVGDADFPF
Sequences:
>Translated_588_residues MINMSVIKAFLVSPLKWLRVTVAVIFFIGIAYAFLHHIPAWNVPNMTGGGEGMEDSFSLARWQFVPSVLGTLSGAAVSAV ILGVLLLLTLLFGRVYCSFICPLGILQDIVFRIRRWLAPKRFLKFSRPVPWVRYGVLALLAACCVTGLAGLSLNWLDPYS IFGRIMYVLAWPAAIWSNNLLAADSSSADLVQMDYFPAAFPVLLASAGMLGLVAVMSAWKGRLYCNTVCPVGTLLGLLSR ISLFRLGFDPASCKKCGKCVKSCKAQCLNLKEYKIDSSRCVACYDCVRSCSEGGIRYRWFTRARQLVPAQKKKASPDTAL SSSAAVPSIAGSSRRQFLEATAAGLATAALSGCRGDAARKLDPTQCVLPPGAGSLERFLDICTGCQMCVANCPTHVLQPS YLQLGLKGFMKPRMDFATKYCLYDCHRCAEVCPTGAIRRMPVTAERDTEGITKDTTRIAVARFYVCRCLVAREDMDCGAC TEHCPTKALYTVPYIGRDGQEHRLPRLDPSLCIGCGACEHACPVTAERPEERERRNSCDLCEEKCEFGRRREMPPRALVV RAVNPQQKAVKKFEDKAVDPVGDADFPF >Mature_588_residues MINMSVIKAFLVSPLKWLRVTVAVIFFIGIAYAFLHHIPAWNVPNMTGGGEGMEDSFSLARWQFVPSVLGTLSGAAVSAV ILGVLLLLTLLFGRVYCSFICPLGILQDIVFRIRRWLAPKRFLKFSRPVPWVRYGVLALLAACCVTGLAGLSLNWLDPYS IFGRIMYVLAWPAAIWSNNLLAADSSSADLVQMDYFPAAFPVLLASAGMLGLVAVMSAWKGRLYCNTVCPVGTLLGLLSR ISLFRLGFDPASCKKCGKCVKSCKAQCLNLKEYKIDSSRCVACYDCVRSCSEGGIRYRWFTRARQLVPAQKKKASPDTAL SSSAAVPSIAGSSRRQFLEATAAGLATAALSGCRGDAARKLDPTQCVLPPGAGSLERFLDICTGCQMCVANCPTHVLQPS YLQLGLKGFMKPRMDFATKYCLYDCHRCAEVCPTGAIRRMPVTAERDTEGITKDTTRIAVARFYVCRCLVAREDMDCGAC TEHCPTKALYTVPYIGRDGQEHRLPRLDPSLCIGCGACEHACPVTAERPEERERRNSCDLCEEKCEFGRRREMPPRALVV RAVNPQQKAVKKFEDKAVDPVGDADFPF
Specific function: Unknown
COG id: COG1145
COG function: function code C; Ferredoxin
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1787226, Length=257, Percent_Identity=25.2918287937743, Blast_Score=68, Evalue=1e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 64542; Mature: 64542
Theoretical pI: Translated: 8.66; Mature: 8.66
Prosite motif: PS00198 4FE4S_FERREDOXIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
6.3 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 8.7 %Cys+Met (Translated Protein) 6.3 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 8.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MINMSVIKAFLVSPLKWLRVTVAVIFFIGIAYAFLHHIPAWNVPNMTGGGEGMEDSFSLA CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHH RWQFVPSVLGTLSGAAVSAVILGVLLLLTLLFGRVYCSFICPLGILQDIVFRIRRWLAPK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH RFLKFSRPVPWVRYGVLALLAACCVTGLAGLSLNWLDPYSIFGRIMYVLAWPAAIWSNNL HHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCE LAADSSSADLVQMDYFPAAFPVLLASAGMLGLVAVMSAWKGRLYCNTVCPVGTLLGLLSR EECCCCCCCEEEECCCHHHHHHHHHHCCHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHH ISLFRLGFDPASCKKCGKCVKSCKAQCLNLKEYKIDSSRCVACYDCVRSCSEGGIRYRWF HHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHCCCCEEHHH TRARQLVPAQKKKASPDTALSSSAAVPSIAGSSRRQFLEATAAGLATAALSGCRGDAARK HHHHHHCCCHHHCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHCC LDPTQCVLPPGAGSLERFLDICTGCQMCVANCPTHVLQPSYLQLGLKGFMKPRMDFATKY CCCCCEECCCCCCHHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHCHHHHHHHHH CLYDCHRCAEVCPTGAIRRMPVTAERDTEGITKDTTRIAVARFYVCRCLVAREDMDCGAC HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCH TEHCPTKALYTVPYIGRDGQEHRLPRLDPSLCIGCGACEHACPVTAERPEERERRNSCDL HHCCCCCCEEECCCCCCCCCCCCCCCCCHHHEEECCCCCCCCCCCCCCCHHHHHCCCCHH CEEKCEFGRRREMPPRALVVRAVNPQQKAVKKFEDKAVDPVGDADFPF HHHHHHHHHCCCCCCHHEEEEECCHHHHHHHHHHHHCCCCCCCCCCCC >Mature Secondary Structure MINMSVIKAFLVSPLKWLRVTVAVIFFIGIAYAFLHHIPAWNVPNMTGGGEGMEDSFSLA CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHH RWQFVPSVLGTLSGAAVSAVILGVLLLLTLLFGRVYCSFICPLGILQDIVFRIRRWLAPK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH RFLKFSRPVPWVRYGVLALLAACCVTGLAGLSLNWLDPYSIFGRIMYVLAWPAAIWSNNL HHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCE LAADSSSADLVQMDYFPAAFPVLLASAGMLGLVAVMSAWKGRLYCNTVCPVGTLLGLLSR EECCCCCCCEEEECCCHHHHHHHHHHCCHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHH ISLFRLGFDPASCKKCGKCVKSCKAQCLNLKEYKIDSSRCVACYDCVRSCSEGGIRYRWF HHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHCCCCEEHHH TRARQLVPAQKKKASPDTALSSSAAVPSIAGSSRRQFLEATAAGLATAALSGCRGDAARK HHHHHHCCCHHHCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHCC LDPTQCVLPPGAGSLERFLDICTGCQMCVANCPTHVLQPSYLQLGLKGFMKPRMDFATKY CCCCCEECCCCCCHHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHCHHHHHHHHH CLYDCHRCAEVCPTGAIRRMPVTAERDTEGITKDTTRIAVARFYVCRCLVAREDMDCGAC HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCH TEHCPTKALYTVPYIGRDGQEHRLPRLDPSLCIGCGACEHACPVTAERPEERERRNSCDL HHCCCCCCEEECCCCCCCCCCCCCCCCCHHHEEECCCCCCCCCCCCCCCHHHHHCCCCHH CEEKCEFGRRREMPPRALVVRAVNPQQKAVKKFEDKAVDPVGDADFPF HHHHHHHHHCCCCCCHHEEEEECCHHHHHHHHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: Fe [C]
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA