Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
---|---|
Accession | NC_010655 |
Length | 2,664,102 |
Click here to switch to the map view.
The map label for this gene is 187735462
Identifier: 187735462
GI number: 187735462
Start: 1145841
End: 1146689
Strand: Direct
Name: 187735462
Synonym: Amuc_0961
Alternate gene names: NA
Gene position: 1145841-1146689 (Clockwise)
Preceding gene: 187735460
Following gene: 187735463
Centisome position: 43.01
GC content: 62.07
Gene sequence:
>849_bases ATGGATTCCCTGTTCGCCCAGGAGGCCGGAGCTCCGGCGGCTTCCGGCATCCCGGATCTGGTGGCCGTTCGCAACGGTAC CCGTGCGGAGATGGTCAGGAAGGCCGTGGAGACGCTGGGCGGCATGCAGGCTTTCGTCAAGCCGGGCCAGACCGTCGTCA TCAAGCCGAACATCGGCTGGAACAAGGCTCCGGAATTTGGCGCCAACACTCATCCTGAAACCGTCGCCACGCTGGTGGAG CTGTGCAGGAAGGCCGGGGCGAAGGAAGTAAGGGTGTTTGACCACTGCTGCCACAACGGCGCTTATGAGGGCAGCGGCGT GAAAGAGGCCGTAGAGAAGGCTGGCGGTGTGATGGTGGACGGCGGCAATGAGAGCCAGTACGTGCGGACGGAAAACCCGA AAGCCCGGAAATTCACCTCCGCCAAGGTGCATAAGGCCGTGCTGGAAGCGGATGTTTATATCACCTGCCCGCCCCTCAAG CACCACAGCGGTTCCGAGATGACCGCCTGCATGAAGAATGTCATGGGCACCGTCTGGGACCGCGGGGCCATGCATAAGAA CGACCTGCACCAGTGCATCGCGGACGCCGTGTATTTCCGCAAGCCGGACCTGTGCGTGCTGGACGCCTACATGCCCATGG TGCGCAATGGCCCCGTGGGGAAGGATACGAATGACCTGGTGGAGCGCAAAACCCTTCTGGCTTCCCGTGACATCGTGGCC ATTGACGCTGCGGGCGCCGCCCTGCTGAACAAGGCCGGAAAAATTCGCCATGTGCAGCTTGGGGAGGAAATGGGGCTGGG CGTCGCCGACCTTTCCAGGCTTAATATCCGCCGTATCAGCATGGCCTGA
Upstream 100 bases:
>100_bases CATGCGGGGATAAACCACAGACGTTGCCATGAAGATGACTGACAGACGCACTTTTTTGAAAAGGACTGCCGCCGCAGGGG CGCTGGCGGCCATATCGGAC
Downstream 100 bases:
>100_bases CGCGGCGGCTCCTTCTCCCGTCTGCGGATGACGCGGTGGGGGGCCAACTTTCCGCCTCCGGCGGGTTTATGATAAATATG TCAGTTATCAAAGCCTTTCT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 282; Mature: 282
Protein sequence:
>282_residues MDSLFAQEAGAPAASGIPDLVAVRNGTRAEMVRKAVETLGGMQAFVKPGQTVVIKPNIGWNKAPEFGANTHPETVATLVE LCRKAGAKEVRVFDHCCHNGAYEGSGVKEAVEKAGGVMVDGGNESQYVRTENPKARKFTSAKVHKAVLEADVYITCPPLK HHSGSEMTACMKNVMGTVWDRGAMHKNDLHQCIADAVYFRKPDLCVLDAYMPMVRNGPVGKDTNDLVERKTLLASRDIVA IDAAGAALLNKAGKIRHVQLGEEMGLGVADLSRLNIRRISMA
Sequences:
>Translated_282_residues MDSLFAQEAGAPAASGIPDLVAVRNGTRAEMVRKAVETLGGMQAFVKPGQTVVIKPNIGWNKAPEFGANTHPETVATLVE LCRKAGAKEVRVFDHCCHNGAYEGSGVKEAVEKAGGVMVDGGNESQYVRTENPKARKFTSAKVHKAVLEADVYITCPPLK HHSGSEMTACMKNVMGTVWDRGAMHKNDLHQCIADAVYFRKPDLCVLDAYMPMVRNGPVGKDTNDLVERKTLLASRDIVA IDAAGAALLNKAGKIRHVQLGEEMGLGVADLSRLNIRRISMA >Mature_282_residues MDSLFAQEAGAPAASGIPDLVAVRNGTRAEMVRKAVETLGGMQAFVKPGQTVVIKPNIGWNKAPEFGANTHPETVATLVE LCRKAGAKEVRVFDHCCHNGAYEGSGVKEAVEKAGGVMVDGGNESQYVRTENPKARKFTSAKVHKAVLEADVYITCPPLK HHSGSEMTACMKNVMGTVWDRGAMHKNDLHQCIADAVYFRKPDLCVLDAYMPMVRNGPVGKDTNDLVERKTLLASRDIVA IDAAGAALLNKAGKIRHVQLGEEMGLGVADLSRLNIRRISMA
Specific function: Unknown
COG id: COG2006
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cellular thylakoid membrane; Peripheral membrane protein; Cytoplasmic side (Probable) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007160 [H]
Pfam domain/function: PF04015 DUF362 [H]
EC number: NA
Molecular weight: Translated: 30334; Mature: 30334
Theoretical pI: Translated: 8.49; Mature: 8.49
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.5 %Cys (Translated Protein) 4.3 %Met (Translated Protein) 6.7 %Cys+Met (Translated Protein) 2.5 %Cys (Mature Protein) 4.3 %Met (Mature Protein) 6.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDSLFAQEAGAPAASGIPDLVAVRNGTRAEMVRKAVETLGGMQAFVKPGQTVVIKPNIGW CCCCHHHHCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHCCHHHHHCCCCEEEEECCCCC NKAPEFGANTHPETVATLVELCRKAGAKEVRVFDHCCHNGAYEGSGVKEAVEKAGGVMVD CCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHCCEEEE GGNESQYVRTENPKARKFTSAKVHKAVLEADVYITCPPLKHHSGSEMTACMKNVMGTVWD CCCCCCEEECCCCCHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCHHHHHHHHHHHHHHC RGAMHKNDLHQCIADAVYFRKPDLCVLDAYMPMVRNGPVGKDTNDLVERKTLLASRDIVA CCCCCHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCEEE IDAAGAALLNKAGKIRHVQLGEEMGLGVADLSRLNIRRISMA EECCCHHHHHHCCCEEEEECCHHHCCCHHHHHHHCEEEECCC >Mature Secondary Structure MDSLFAQEAGAPAASGIPDLVAVRNGTRAEMVRKAVETLGGMQAFVKPGQTVVIKPNIGW CCCCHHHHCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHCCHHHHHCCCCEEEEECCCCC NKAPEFGANTHPETVATLVELCRKAGAKEVRVFDHCCHNGAYEGSGVKEAVEKAGGVMVD CCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHCCEEEE GGNESQYVRTENPKARKFTSAKVHKAVLEADVYITCPPLKHHSGSEMTACMKNVMGTVWD CCCCCCEEECCCCCHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCHHHHHHHHHHHHHHC RGAMHKNDLHQCIADAVYFRKPDLCVLDAYMPMVRNGPVGKDTNDLVERKTLLASRDIVA CCCCCHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCEEE IDAAGAALLNKAGKIRHVQLGEEMGLGVADLSRLNIRRISMA EECCCHHHHHHCCCEEEEECCHHHCCCHHHHHHHCEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 8905231 [H]