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The map label for this gene is rtcB [H]

Identifier: 187735410

GI number: 187735410

Start: 1085664

End: 1086779

Strand: Reverse

Name: rtcB [H]

Synonym: Amuc_0909

Alternate gene names: 187735410

Gene position: 1086779-1085664 (Counterclockwise)

Preceding gene: 187735412

Following gene: 187735408

Centisome position: 40.79

GC content: 56.27

Gene sequence:

>1116_bases
ATGATCACCATTGACGGAAAATACACGGAAGCCCGCGTGTTCACGGATGAACTGGAAGACCTGGCCCGCACCCAGATCAG
GGACGTCTGCAACCACCCCGCCTTTGAAGGAAGCCGGGTGCGCATCATGCCGGACGTGCACGCCGGAGCCGGCTGCGTCA
TCGGGTTCACGGCGGAATTGAAAACGGATAAGGTAATTCCCAACCTGATCGGCGTGGATATCGGCTGCGGAGTGCTTACC
GCCAGACTGTCCGGACTGCCGGATTTTTCCAGCTTTGACGCACGCCTGCGCGAGCGCGTCCCATCCGGGATGCATGCCCG
TCCCTCCGTTCATCAAGCCTTGCTGGACGACCCGGAACTGGATGAAGAAATCTCCCGCATCTGCATGGACGTGCTGAGAA
CGGACAAAGACAGGCACCGCCGCTCCGTAGGGTCTCTGGGAGGAGGCAACCACTTCATTGAAATAGCGCAAGGGAAAGAG
CACGCTTTCCTGTGCATCCACTCCGGTTCCCGCAATTTCGGTCTGAAGATTGCGGAACGCTACCAGAAAATCGCCGTGGA
TACTTGTCCGGACGCCTATCTTAAAGAACGCAAGAAAGGACTCTGCTACCTTCAGGGAGAAAATACGCTGAACTACATGC
GGGATATGAAGGTGGCTCAGCGCTTCGCAGCCCTGAACCGCCGCGTGATACTGCATGAACTGCTGGATGATGCAGCTGAT
CTGGAAAGTTTCGACACCGTGCACAACTACATTGCGGAAGACCAAATCATCCGCAAGGGAGCCGTCCGGGCCGGACGCGG
AGAAAAACTCATCGTTCCCCTGAATATGCGTGACGGCTCCGTCATCTGCATCGGCAAAGGAAATGAAGAATTCAATTCCT
CATCTCCGCACGGCGCAGGCCGCAGCATGTCCCGCAAAAAGGCTAAAGCCAATCTTTCCCTGGAGGAATTCGAGGCTTCC
ATGCAGGGTATTTTCTCCACCTGCGTTTCCCGCGCTACGCTGGATGAAGCGCCAATGGCCTACAAGGATGGCGAGAGCGT
GCTGGACAACATCCATGAAACGGCGGAAATCGTGGAACGCATCAGGCCCGTATATAACTTCAAGGCACCCGAATAG

Upstream 100 bases:

>100_bases
TATAATGCAAGAGTCAACAAATGCGTTATGGTGACAAGGTCACAGGGCGCGAAGGCGCTTTCCGCATATCTCCGCGCCCC
TCAACCAAAAGAATAAAACC

Downstream 100 bases:

>100_bases
CAGGCGTCCCAATACCCGCCCCTCCCGGAATATGATTTTCCGGGAGGCTTTTCCCAAACCTCCAAAACACGGTCAGGAAC
GCCCGGCAGCATAAATCAAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 371; Mature: 371

Protein sequence:

>371_residues
MITIDGKYTEARVFTDELEDLARTQIRDVCNHPAFEGSRVRIMPDVHAGAGCVIGFTAELKTDKVIPNLIGVDIGCGVLT
ARLSGLPDFSSFDARLRERVPSGMHARPSVHQALLDDPELDEEISRICMDVLRTDKDRHRRSVGSLGGGNHFIEIAQGKE
HAFLCIHSGSRNFGLKIAERYQKIAVDTCPDAYLKERKKGLCYLQGENTLNYMRDMKVAQRFAALNRRVILHELLDDAAD
LESFDTVHNYIAEDQIIRKGAVRAGRGEKLIVPLNMRDGSVICIGKGNEEFNSSSPHGAGRSMSRKKAKANLSLEEFEAS
MQGIFSTCVSRATLDEAPMAYKDGESVLDNIHETAEIVERIRPVYNFKAPE

Sequences:

>Translated_371_residues
MITIDGKYTEARVFTDELEDLARTQIRDVCNHPAFEGSRVRIMPDVHAGAGCVIGFTAELKTDKVIPNLIGVDIGCGVLT
ARLSGLPDFSSFDARLRERVPSGMHARPSVHQALLDDPELDEEISRICMDVLRTDKDRHRRSVGSLGGGNHFIEIAQGKE
HAFLCIHSGSRNFGLKIAERYQKIAVDTCPDAYLKERKKGLCYLQGENTLNYMRDMKVAQRFAALNRRVILHELLDDAAD
LESFDTVHNYIAEDQIIRKGAVRAGRGEKLIVPLNMRDGSVICIGKGNEEFNSSSPHGAGRSMSRKKAKANLSLEEFEAS
MQGIFSTCVSRATLDEAPMAYKDGESVLDNIHETAEIVERIRPVYNFKAPE
>Mature_371_residues
MITIDGKYTEARVFTDELEDLARTQIRDVCNHPAFEGSRVRIMPDVHAGAGCVIGFTAELKTDKVIPNLIGVDIGCGVLT
ARLSGLPDFSSFDARLRERVPSGMHARPSVHQALLDDPELDEEISRICMDVLRTDKDRHRRSVGSLGGGNHFIEIAQGKE
HAFLCIHSGSRNFGLKIAERYQKIAVDTCPDAYLKERKKGLCYLQGENTLNYMRDMKVAQRFAALNRRVILHELLDDAAD
LESFDTVHNYIAEDQIIRKGAVRAGRGEKLIVPLNMRDGSVICIGKGNEEFNSSSPHGAGRSMSRKKAKANLSLEEFEAS
MQGIFSTCVSRATLDEAPMAYKDGESVLDNIHETAEIVERIRPVYNFKAPE

Specific function: Unknown

COG id: COG1690

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0027 (rtcB) family [H]

Homologues:

Organism=Escherichia coli, GI2367224, Length=395, Percent_Identity=29.620253164557, Blast_Score=140, Evalue=1e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001233 [H]

Pfam domain/function: PF01139 UPF0027 [H]

EC number: NA

Molecular weight: Translated: 41248; Mature: 41248

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: PS00369 PTS_HPR_HIS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITIDGKYTEARVFTDELEDLARTQIRDVCNHPAFEGSRVRIMPDVHAGAGCVIGFTAEL
CEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCEEEEEEECC
KTDKVIPNLIGVDIGCGVLTARLSGLPDFSSFDARLRERVPSGMHARPSVHQALLDDPEL
CCCHHCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCH
DEEISRICMDVLRTDKDRHRRSVGSLGGGNHFIEIAQGKEHAFLCIHSGSRNFGLKIAER
HHHHHHHHHHHHHCCHHHHHHHHCCCCCCCEEEEEECCCCEEEEEEECCCCCCCHHHHHH
YQKIAVDTCPDAYLKERKKGLCYLQGENTLNYMRDMKVAQRFAALNRRVILHELLDDAAD
HHHHHHCCCCHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LESFDTVHNYIAEDQIIRKGAVRAGRGEKLIVPLNMRDGSVICIGKGNEEFNSSSPHGAG
HHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCEEEEECCCCCCCCCCCCCCC
RSMSRKKAKANLSLEEFEASMQGIFSTCVSRATLDEAPMAYKDGESVLDNIHETAEIVER
CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH
IRPVYNFKAPE
HHHHHCCCCCC
>Mature Secondary Structure
MITIDGKYTEARVFTDELEDLARTQIRDVCNHPAFEGSRVRIMPDVHAGAGCVIGFTAEL
CEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCEEEEEEECC
KTDKVIPNLIGVDIGCGVLTARLSGLPDFSSFDARLRERVPSGMHARPSVHQALLDDPEL
CCCHHCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCH
DEEISRICMDVLRTDKDRHRRSVGSLGGGNHFIEIAQGKEHAFLCIHSGSRNFGLKIAER
HHHHHHHHHHHHHCCHHHHHHHHCCCCCCCEEEEEECCCCEEEEEEECCCCCCCHHHHHH
YQKIAVDTCPDAYLKERKKGLCYLQGENTLNYMRDMKVAQRFAALNRRVILHELLDDAAD
HHHHHHCCCCHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LESFDTVHNYIAEDQIIRKGAVRAGRGEKLIVPLNMRDGSVICIGKGNEEFNSSSPHGAG
HHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCEEEEECCCCCCCCCCCCCCC
RSMSRKKAKANLSLEEFEASMQGIFSTCVSRATLDEAPMAYKDGESVLDNIHETAEIVER
CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH
IRPVYNFKAPE
HHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503; 9738023 [H]