Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is miaB
Identifier: 187735351
GI number: 187735351
Start: 1012423
End: 1013799
Strand: Reverse
Name: miaB
Synonym: Amuc_0849
Alternate gene names: 187735351
Gene position: 1013799-1012423 (Counterclockwise)
Preceding gene: 187735352
Following gene: 187735347
Centisome position: 38.05
GC content: 58.97
Gene sequence:
>1377_bases ATGCCCAAGCTTTATATCAAAACCTACGGCTGCCAGATGAACGAACGGGACTCCGAACAGGTGGCCCGCATGTTCGTGCA GAAGGGCTACACCATGACGGACCGCGAGGATGAGGCGGACGTCATCCTGTTCAACTCCTGTTCCATCCGGGAACAGGCGG AACAAAAGGCTCTGGGAAAAATGGGGCTTCTGGCCAAGCAGCAGCGGCATCGTCCGCATGTAGTGTACGGCATGATGGGC TGCATGGCCCAAAGTAAAAAAGAGGAACTGTTCAAGGAACTGCCGCGCCTGGACCTCGTGGTCGGCACCCAGAAATACCA CCGCGTATTTGAACATGTGGACGGCATTCTGCGCGCGCGCCAGGAACGCCGCATGGATGAGTTGCAAACCGCCTTTTCCG GTACGCATGTGTGCGATGTGGCGGAAGAGGCGGATTCCCAGAACCGAATCCGGGATCACCTGAATCCCGGCGTGCGCTCC ACGGCGTATGTCTCCATCATGCAGGGGTGCGAAATGAAGTGCGCCTACTGCATTGTTCCCTACACCCGCGGCGCAGAACG CAGCCGCCCCATCCGGGACGTGGTGGATGAGGTGAAGATGCTGGCGGACGCCGGCGTGAAGGAAGTCACGCTGCTGGGCC AGATCGTCAACCGATACGGCAGGCAGATGGAAACGGCAGGCGGCAAGGGCGGCTTCGTCCAGCTGCTGGAAGCCGTGCAT GAAGTGGAAGGAATCCGGCGCATCCGCTTCGTTTCCCCGCATCCCATCGGTTTCCGCCAGGATCTGGTGCAGGCGTTCAC CTACCTTCCCAAGTTGTGCAGCCACATTCATTTCCCGATGCAGAGCGGCAGCGACCGCATCCTGAAAATGATGCGCAGGC CGTACAGGAATGAAACCTATCTGGACCTTTGCTCCCGGATGAAGCAGGCACGCCCGGATTTGTCCATCACCACGGATATC ATTGTGGGCTTCCCAGGAGAAACGGAGGAGGATTACCTGCTGACCAGGCAGGCCGTGGAACAGGTCCAGTTTGACAACGC ATTCATTTTCCGCTATTCCCCGCGCCGCGGCACACCCGCCGCCGTGATGGAGAATCAGATTCCGGAAGAAGTGAAGGAAG CGCGCAACCAGGATCTTCTGGCCGTAGTCAATGAAATAGCTATCCGGAAAAACCGGGATCTGGTAGGCACCGTGCAGGAA GTTCTTCTGGAAGGGCCGTCCAAAACGAATGCGGCGCGCCTCTCCGGCCGGACCTCCCAGAACAAGCCCGTCATGGTGGA TGCCGCCCCTGACCTGGCGGGAGAGATCCTTCCCATCCGCATTGAGGAAAGCACGGGATTTACTCTGTACGGCGTTCCAT GCCCCTCCAGGGGATGA
Upstream 100 bases:
>100_bases CCGGGTATTTCGTCACCGCCGTCCAGCCCTTTGACCTGTTCCCCCAGACCAAGCATCTGGAATGCGTGGTCACCCTGAAA AAAAATACCTGATTTTTTCC
Downstream 100 bases:
>100_bases TTTGCACGCTCTTTTCTTCCATTCGCAGATAGAGGCTTCCGGTTTCCCGGAGACGGTATACGGCTGTTCCCTCCGGTACG GGGCATTCATGCTCCGTCGT
Product: RNA modification enzyme, MiaB family
Products: NA
Alternate protein names: tRNA-i(6)A37 methylthiotransferase
Number of amino acids: Translated: 458; Mature: 457
Protein sequence:
>458_residues MPKLYIKTYGCQMNERDSEQVARMFVQKGYTMTDREDEADVILFNSCSIREQAEQKALGKMGLLAKQQRHRPHVVYGMMG CMAQSKKEELFKELPRLDLVVGTQKYHRVFEHVDGILRARQERRMDELQTAFSGTHVCDVAEEADSQNRIRDHLNPGVRS TAYVSIMQGCEMKCAYCIVPYTRGAERSRPIRDVVDEVKMLADAGVKEVTLLGQIVNRYGRQMETAGGKGGFVQLLEAVH EVEGIRRIRFVSPHPIGFRQDLVQAFTYLPKLCSHIHFPMQSGSDRILKMMRRPYRNETYLDLCSRMKQARPDLSITTDI IVGFPGETEEDYLLTRQAVEQVQFDNAFIFRYSPRRGTPAAVMENQIPEEVKEARNQDLLAVVNEIAIRKNRDLVGTVQE VLLEGPSKTNAARLSGRTSQNKPVMVDAAPDLAGEILPIRIEESTGFTLYGVPCPSRG
Sequences:
>Translated_458_residues MPKLYIKTYGCQMNERDSEQVARMFVQKGYTMTDREDEADVILFNSCSIREQAEQKALGKMGLLAKQQRHRPHVVYGMMG CMAQSKKEELFKELPRLDLVVGTQKYHRVFEHVDGILRARQERRMDELQTAFSGTHVCDVAEEADSQNRIRDHLNPGVRS TAYVSIMQGCEMKCAYCIVPYTRGAERSRPIRDVVDEVKMLADAGVKEVTLLGQIVNRYGRQMETAGGKGGFVQLLEAVH EVEGIRRIRFVSPHPIGFRQDLVQAFTYLPKLCSHIHFPMQSGSDRILKMMRRPYRNETYLDLCSRMKQARPDLSITTDI IVGFPGETEEDYLLTRQAVEQVQFDNAFIFRYSPRRGTPAAVMENQIPEEVKEARNQDLLAVVNEIAIRKNRDLVGTVQE VLLEGPSKTNAARLSGRTSQNKPVMVDAAPDLAGEILPIRIEESTGFTLYGVPCPSRG >Mature_457_residues PKLYIKTYGCQMNERDSEQVARMFVQKGYTMTDREDEADVILFNSCSIREQAEQKALGKMGLLAKQQRHRPHVVYGMMGC MAQSKKEELFKELPRLDLVVGTQKYHRVFEHVDGILRARQERRMDELQTAFSGTHVCDVAEEADSQNRIRDHLNPGVRST AYVSIMQGCEMKCAYCIVPYTRGAERSRPIRDVVDEVKMLADAGVKEVTLLGQIVNRYGRQMETAGGKGGFVQLLEAVHE VEGIRRIRFVSPHPIGFRQDLVQAFTYLPKLCSHIHFPMQSGSDRILKMMRRPYRNETYLDLCSRMKQARPDLSITTDII VGFPGETEEDYLLTRQAVEQVQFDNAFIFRYSPRRGTPAAVMENQIPEEVKEARNQDLLAVVNEIAIRKNRDLVGTVQEV LLEGPSKTNAARLSGRTSQNKPVMVDAAPDLAGEILPIRIEESTGFTLYGVPCPSRG
Specific function: Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
COG id: COG0621
COG function: function code J; 2-methylthioadenine synthetase
Gene ontology:
Cell location: Cytoplasm (Potential)
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 TRAM domain
Homologues:
Organism=Homo sapiens, GI28872784, Length=487, Percent_Identity=36.3449691991786, Blast_Score=284, Evalue=2e-76, Organism=Homo sapiens, GI28872782, Length=487, Percent_Identity=36.3449691991786, Blast_Score=283, Evalue=2e-76, Organism=Homo sapiens, GI93277076, Length=458, Percent_Identity=28.6026200873362, Blast_Score=178, Evalue=1e-44, Organism=Escherichia coli, GI1786882, Length=451, Percent_Identity=39.4678492239468, Blast_Score=330, Evalue=9e-92, Organism=Escherichia coli, GI1787057, Length=467, Percent_Identity=29.3361884368308, Blast_Score=188, Evalue=7e-49, Organism=Caenorhabditis elegans, GI17553146, Length=436, Percent_Identity=35.0917431192661, Blast_Score=254, Evalue=9e-68, Organism=Caenorhabditis elegans, GI71996771, Length=396, Percent_Identity=26.010101010101, Blast_Score=108, Evalue=4e-24, Organism=Drosophila melanogaster, GI21356207, Length=488, Percent_Identity=34.4262295081967, Blast_Score=261, Evalue=1e-69, Organism=Drosophila melanogaster, GI19922432, Length=450, Percent_Identity=28.4444444444444, Blast_Score=159, Evalue=5e-39,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): MIAB_AKKM8 (B2UQE7)
Other databases:
- EMBL: CP001071 - RefSeq: YP_001877463.1 - GeneID: 6274320 - GenomeReviews: CP001071_GR - KEGG: amu:Amuc_0849 - HOGENOM: HBG457663 - OMA: EVRTYGC - ProtClustDB: CLSK2335569 - GO: GO:0005737 - HAMAP: MF_01864 - InterPro: IPR006638 - InterPro: IPR005839 - InterPro: IPR020612 - InterPro: IPR013848 - InterPro: IPR006463 - InterPro: IPR007197 - InterPro: IPR002792 - PANTHER: PTHR11918 - SMART: SM00729 - TIGRFAMs: TIGR01574 - TIGRFAMs: TIGR00089
Pfam domain/function: PF04055 Radical_SAM; PF01938 TRAM; PF00919 UPF0004
EC number: NA
Molecular weight: Translated: 51965; Mature: 51834
Theoretical pI: Translated: 7.92; Mature: 7.92
Prosite motif: PS51449 MTTASE_N; PS01278 MTTASE_RADICAL; PS50926 TRAM
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 6.3 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 3.9 %Met (Mature Protein) 6.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPKLYIKTYGCQMNERDSEQVARMFVQKGYTMTDREDEADVILFNSCSIREQAEQKALGK CCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHH MGLLAKQQRHRPHVVYGMMGCMAQSKKEELFKELPRLDLVVGTQKYHRVFEHVDGILRAR HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHH QERRMDELQTAFSGTHVCDVAEEADSQNRIRDHLNPGVRSTAYVSIMQGCEMKCAYCIVP HHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEEEEEE YTRGAERSRPIRDVVDEVKMLADAGVKEVTLLGQIVNRYGRQMETAGGKGGFVQLLEAVH CCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH EVEGIRRIRFVSPHPIGFRQDLVQAFTYLPKLCSHIHFPMQSGSDRILKMMRRPYRNETY HHHHHHHEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCHH LDLCSRMKQARPDLSITTDIIVGFPGETEEDYLLTRQAVEQVQFDNAFIFRYSPRRGTPA HHHHHHHHHCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCH AVMENQIPEEVKEARNQDLLAVVNEIAIRKNRDLVGTVQEVLLEGPSKTNAARLSGRTSQ HHHHHCCHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHCCCCCC NKPVMVDAAPDLAGEILPIRIEESTGFTLYGVPCPSRG CCCEEEECCCCCCCCEEEEEEECCCCEEEEECCCCCCC >Mature Secondary Structure PKLYIKTYGCQMNERDSEQVARMFVQKGYTMTDREDEADVILFNSCSIREQAEQKALGK CCEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHH MGLLAKQQRHRPHVVYGMMGCMAQSKKEELFKELPRLDLVVGTQKYHRVFEHVDGILRAR HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHH QERRMDELQTAFSGTHVCDVAEEADSQNRIRDHLNPGVRSTAYVSIMQGCEMKCAYCIVP HHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEEEEEE YTRGAERSRPIRDVVDEVKMLADAGVKEVTLLGQIVNRYGRQMETAGGKGGFVQLLEAVH CCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH EVEGIRRIRFVSPHPIGFRQDLVQAFTYLPKLCSHIHFPMQSGSDRILKMMRRPYRNETY HHHHHHHEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCHH LDLCSRMKQARPDLSITTDIIVGFPGETEEDYLLTRQAVEQVQFDNAFIFRYSPRRGTPA HHHHHHHHHCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCH AVMENQIPEEVKEARNQDLLAVVNEIAIRKNRDLVGTVQEVLLEGPSKTNAARLSGRTSQ HHHHHCCHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHCCCCCC NKPVMVDAAPDLAGEILPIRIEESTGFTLYGVPCPSRG CCCEEEECCCCCCCCEEEEEEECCCCEEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA