Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is nrdR
Identifier: 187735340
GI number: 187735340
Start: 997516
End: 998007
Strand: Direct
Name: nrdR
Synonym: Amuc_0838
Alternate gene names: 187735340
Gene position: 997516-998007 (Clockwise)
Preceding gene: 187735339
Following gene: 187735341
Centisome position: 37.44
GC content: 51.42
Gene sequence:
>492_bases ATGAGATGCGTTCAGTGCGGTCATTTGGAAGATAAGGTCATCGACTCCCGTATGTCCAAAGACGGGACGACCATTCGCCG CCGCCGCGTGTGTTTGAGGTGCGATTACCGTTATACGACCTATGAGCAGATTGAACGCACGGAGTTGCGCGTAGTCAAAA GGGATAATCTGAGAGAAGCCCTGAATCGTGAAAAGATTTTACGCGGCCTGGTAAAGGCGTGTGAAAAAAGGCCCGTCAGC ATGGATCGCCTGGACCGCGCCGTGGAAGAGATCATTTCCGAATTGCACCGCGACCATTTGCGCGAAGTCCCTTCCAGCGA GATTGGCAAGAAGGTGATTGAAAAATTGTATGCCATAGATCCCGTGGCTTATATCCGCTATGTGTCCGTGTACCGCCAGT TTTCCAATGTGGAGGAGTTTATCCAGGAGATTACGCAGATGCGCCACCAGACGCTTATTGATCCCCTGCAGCGCAAGCTT CCCATTCTTTAA
Upstream 100 bases:
>100_bases AGGAAGTTCTGCTTGGGAAGCATTGATCATCAAGTCTACTGTACTATATTTGGCGTACTTTTTCCTTTATGGATGCGTTA TGTAGTAGTATGGTCGCGCC
Downstream 100 bases:
>100_bases ATTTCCTGTTCCATGATCGGCTTCCGAAACAACAGACCGTTGCTCAAGCTTGGTGATTGCCTGATTACCGAGTACGGGGA ACAATGGCTGGCGGATGCTT
Product: ATP-cone domain protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 163; Mature: 163
Protein sequence:
>163_residues MRCVQCGHLEDKVIDSRMSKDGTTIRRRRVCLRCDYRYTTYEQIERTELRVVKRDNLREALNREKILRGLVKACEKRPVS MDRLDRAVEEIISELHRDHLREVPSSEIGKKVIEKLYAIDPVAYIRYVSVYRQFSNVEEFIQEITQMRHQTLIDPLQRKL PIL
Sequences:
>Translated_163_residues MRCVQCGHLEDKVIDSRMSKDGTTIRRRRVCLRCDYRYTTYEQIERTELRVVKRDNLREALNREKILRGLVKACEKRPVS MDRLDRAVEEIISELHRDHLREVPSSEIGKKVIEKLYAIDPVAYIRYVSVYRQFSNVEEFIQEITQMRHQTLIDPLQRKL PIL >Mature_163_residues MRCVQCGHLEDKVIDSRMSKDGTTIRRRRVCLRCDYRYTTYEQIERTELRVVKRDNLREALNREKILRGLVKACEKRPVS MDRLDRAVEEIISELHRDHLREVPSSEIGKKVIEKLYAIDPVAYIRYVSVYRQFSNVEEFIQEITQMRHQTLIDPLQRKL PIL
Specific function: Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
COG id: COG1327
COG function: function code K; Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ATP-cone domain
Homologues:
Organism=Escherichia coli, GI1786615, Length=147, Percent_Identity=46.9387755102041, Blast_Score=137, Evalue=3e-34,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NRDR_AKKM8 (B2UQD6)
Other databases:
- EMBL: CP001071 - RefSeq: YP_001877452.1 - GeneID: 6274331 - GenomeReviews: CP001071_GR - KEGG: amu:Amuc_0838 - HOGENOM: HBG351755 - OMA: FASVYRD - GO: GO:0006350 - HAMAP: MF_00440 - InterPro: IPR005144 - InterPro: IPR003796 - TIGRFAMs: TIGR00244
Pfam domain/function: PF03477 ATP-cone
EC number: NA
Molecular weight: Translated: 19517; Mature: 19517
Theoretical pI: Translated: 9.43; Mature: 9.43
Prosite motif: PS51161 ATP_CONE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.1 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 5.5 %Cys+Met (Translated Protein) 3.1 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 5.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRCVQCGHLEDKVIDSRMSKDGTTIRRRRVCLRCDYRYTTYEQIERTELRVVKRDNLREA CCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH LNREKILRGLVKACEKRPVSMDRLDRAVEEIISELHRDHLREVPSSEIGKKVIEKLYAID HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH PVAYIRYVSVYRQFSNVEEFIQEITQMRHQTLIDPLQRKLPIL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MRCVQCGHLEDKVIDSRMSKDGTTIRRRRVCLRCDYRYTTYEQIERTELRVVKRDNLREA CCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH LNREKILRGLVKACEKRPVSMDRLDRAVEEIISELHRDHLREVPSSEIGKKVIEKLYAID HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH PVAYIRYVSVYRQFSNVEEFIQEITQMRHQTLIDPLQRKLPIL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA