Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is 187735339
Identifier: 187735339
GI number: 187735339
Start: 995681
End: 997237
Strand: Direct
Name: 187735339
Synonym: Amuc_0837
Alternate gene names: NA
Gene position: 995681-997237 (Clockwise)
Preceding gene: 187735338
Following gene: 187735340
Centisome position: 37.37
GC content: 55.36
Gene sequence:
>1557_bases ATGATTCGTTTTCTATCCTTTTTATTTTTCCTGTGCTTTTTTTCCGTGTGTTCTGCAAAAGAATTGAAGATTTTTTTGCT GACGGGCCAATCCAATTCGCTGGGGGCGGTGAAGGGCAGCCCTGCTTCTCCGGAGCTGTTAAAAAAGTATGAACCGAAGG AGACTCTGTACTGGCATGAAAATTTTGGGCAAAGGGAAGGCGTGTTTCCCGGCGCTTCCACATCCTGGGAGCAGGTAAGG CCTGCTATGCCGCGTTATAACGGCAATTTATGCATGGGGCCGGAATACGGATTTGCCTTTACTCTGGAGAAGAATGGATG GTTCAAGGATGCGGACGTTGCGGTCGTGAAAGCTTCCCGGGACGGCGGCGACAATTCCCATTGGCAGAAAAACGGCCAGG CTTACAGGACGCTGGTGCAGGCCGTCAAGAATGCCTGTGCGGGTGTGGACAGGTCCAAGTATTCCAAAGTGGAGTTTGCC GGGCTTTTGTATTTGCAGGGGGAAAGCAATGCCGGAACTTCCGTTCCGGAGAGCGCTTCCCGCTTTCTGGAACTTCTGGG CAATCTGGCGGCAGATCTGAAACCGTACGGGGATACATCTGCACTGGCCGCGCAGAAAGCCGTCCTTGGAGAAAATGCCA ATTGGGCCGGAAAGAATGAATCTGATCCGGAAACGGGTAACCTTACCGGCAGCCTGGAAGGACGCGATACGGAAGTTCAG GGAAAGACAACCCGCCAGGTGATGAAGGATCTGGCAGAATCCCGTCCATCCCTGGGCTATGCCCCTACCCGAGATCTTCC CAAACTGACCGCAGGAGATCAAATGGGAGTGCATTACAGCGGCCAGTCTCAGATCAGCATAGGAGCCCGTTTTGCTTATG AAGCCGCCCGGATGGCCGGGAAGGATACCGGCTCCGTGCGAAGCGGTCGTTACGATCTTCCCCTGGGTTCTCCGGACGCG TGGATGAACCGGAAAATGCCGGGGAAGAACGTATGCGTGTGGAATGTGGCTTCTTCCGTAAAACCCAGCCTGGTGTCAGG GGTGGTGAAGTTGTTTGGTATCCGTGTGGAGGATCCGGCCGTCAAGACTGTTATCGTCCGGAGCAAGGGAAGTTCCGGAG ACCGTTTGGTAATCGGGCCGGGAGGTATTCGCCTGGCGGAGGGGAAAAATTTGCAGTTGAGGACGAATGTACAGCTGGCG GGCCGGCAGTCCTGGAATATTCCGGGTGGTTCTGCCGTGGAGATTAAGCCCTCGCCGGTTCAGGAAAAAGCCATGCCTGT CCGTTTGTCCGGCCAGGCGGAGGTGCATGTAACCCAAGCGGAAGGCGGCGGAGAAACGGCGGAAGCGGCCCGCGTCGTAT TGGAACAGGTGCTGCCCTCTGCCCTGAAATGTTCCTGGACGTTGTCCGGAAAGGTGGAGATGACTTTGAAGGGTATGGAG GGGAAGGCCGTGAATTTGGGCAAAGTCTTCGTCAAGCAGGGCGCTGTGCTGAATCTGAATGGCTCCAGACCTGTTGCGGG CAGTGTCGTTAATCAAGGCGGCACGGTGAATCCGTAA
Upstream 100 bases:
>100_bases TTTTCCTACATCTCCCTGTTCATGCTCCTATGGGTAATAGTTGACGGTTGAAAAAGAAAATTCCGGCAGCTATAGTCGTC CCTAGGTAAAGGCAATTCAA
Downstream 100 bases:
>100_bases TCAATAGACCTGGTACGGTCCGGAATGCTTGCCGTATTTTTTAGTGGAGGGAGGAGGTTAAAAAATACGTTTTTTCCTCC CGGAAGGACCATAGGCTTTT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 518; Mature: 518
Protein sequence:
>518_residues MIRFLSFLFFLCFFSVCSAKELKIFLLTGQSNSLGAVKGSPASPELLKKYEPKETLYWHENFGQREGVFPGASTSWEQVR PAMPRYNGNLCMGPEYGFAFTLEKNGWFKDADVAVVKASRDGGDNSHWQKNGQAYRTLVQAVKNACAGVDRSKYSKVEFA GLLYLQGESNAGTSVPESASRFLELLGNLAADLKPYGDTSALAAQKAVLGENANWAGKNESDPETGNLTGSLEGRDTEVQ GKTTRQVMKDLAESRPSLGYAPTRDLPKLTAGDQMGVHYSGQSQISIGARFAYEAARMAGKDTGSVRSGRYDLPLGSPDA WMNRKMPGKNVCVWNVASSVKPSLVSGVVKLFGIRVEDPAVKTVIVRSKGSSGDRLVIGPGGIRLAEGKNLQLRTNVQLA GRQSWNIPGGSAVEIKPSPVQEKAMPVRLSGQAEVHVTQAEGGGETAEAARVVLEQVLPSALKCSWTLSGKVEMTLKGME GKAVNLGKVFVKQGAVLNLNGSRPVAGSVVNQGGTVNP
Sequences:
>Translated_518_residues MIRFLSFLFFLCFFSVCSAKELKIFLLTGQSNSLGAVKGSPASPELLKKYEPKETLYWHENFGQREGVFPGASTSWEQVR PAMPRYNGNLCMGPEYGFAFTLEKNGWFKDADVAVVKASRDGGDNSHWQKNGQAYRTLVQAVKNACAGVDRSKYSKVEFA GLLYLQGESNAGTSVPESASRFLELLGNLAADLKPYGDTSALAAQKAVLGENANWAGKNESDPETGNLTGSLEGRDTEVQ GKTTRQVMKDLAESRPSLGYAPTRDLPKLTAGDQMGVHYSGQSQISIGARFAYEAARMAGKDTGSVRSGRYDLPLGSPDA WMNRKMPGKNVCVWNVASSVKPSLVSGVVKLFGIRVEDPAVKTVIVRSKGSSGDRLVIGPGGIRLAEGKNLQLRTNVQLA GRQSWNIPGGSAVEIKPSPVQEKAMPVRLSGQAEVHVTQAEGGGETAEAARVVLEQVLPSALKCSWTLSGKVEMTLKGME GKAVNLGKVFVKQGAVLNLNGSRPVAGSVVNQGGTVNP >Mature_518_residues MIRFLSFLFFLCFFSVCSAKELKIFLLTGQSNSLGAVKGSPASPELLKKYEPKETLYWHENFGQREGVFPGASTSWEQVR PAMPRYNGNLCMGPEYGFAFTLEKNGWFKDADVAVVKASRDGGDNSHWQKNGQAYRTLVQAVKNACAGVDRSKYSKVEFA GLLYLQGESNAGTSVPESASRFLELLGNLAADLKPYGDTSALAAQKAVLGENANWAGKNESDPETGNLTGSLEGRDTEVQ GKTTRQVMKDLAESRPSLGYAPTRDLPKLTAGDQMGVHYSGQSQISIGARFAYEAARMAGKDTGSVRSGRYDLPLGSPDA WMNRKMPGKNVCVWNVASSVKPSLVSGVVKLFGIRVEDPAVKTVIVRSKGSSGDRLVIGPGGIRLAEGKNLQLRTNVQLA GRQSWNIPGGSAVEIKPSPVQEKAMPVRLSGQAEVHVTQAEGGGETAEAARVVLEQVLPSALKCSWTLSGKVEMTLKGME GKAVNLGKVFVKQGAVLNLNGSRPVAGSVVNQGGTVNP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 55411; Mature: 55411
Theoretical pI: Translated: 9.73; Mature: 9.73
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIRFLSFLFFLCFFSVCSAKELKIFLLTGQSNSLGAVKGSPASPELLKKYEPKETLYWHE CHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEC NFGQREGVFPGASTSWEQVRPAMPRYNGNLCMGPEYGFAFTLEKNGWFKDADVAVVKASR CCCCCCCCCCCCCCCHHHHCCCCCCCCCCEEECCCCCEEEEEECCCCCCCCCEEEEEECC DGGDNSHWQKNGQAYRTLVQAVKNACAGVDRSKYSKVEFAGLLYLQGESNAGTSVPESAS CCCCCCCHHHCCHHHHHHHHHHHHHHCCCCCHHCCEEEEEEEEEEECCCCCCCCCCHHHH RFLELLGNLAADLKPYGDTSALAAQKAVLGENANWAGKNESDPETGNLTGSLEGRDTEVQ HHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCCC GKTTRQVMKDLAESRPSLGYAPTRDLPKLTAGDQMGVHYSGQSQISIGARFAYEAARMAG CHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCEEEECHHHHHHHHHHCC KDTGSVRSGRYDLPLGSPDAWMNRKMPGKNVCVWNVASSVKPSLVSGVVKLFGIRVEDPA CCCCCCCCCEEECCCCCCCHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHEEEECCCC VKTVIVRSKGSSGDRLVIGPGGIRLAEGKNLQLRTNVQLAGRQSWNIPGGSAVEIKPSPV EEEEEEECCCCCCCEEEECCCCEEEECCCCEEEEECEEEECCCCCCCCCCCEEEECCCCC QEKAMPVRLSGQAEVHVTQAEGGGETAEAARVVLEQVLPSALKCSWTLSGKVEMTLKGME HHCCCCEEECCCEEEEEEECCCCCCHHHHHHHHHHHHCCHHHEEEEEECCEEEEEEECCC GKAVNLGKVFVKQGAVLNLNGSRPVAGSVVNQGGTVNP CCEEEHHHHHHHCCCEEEECCCCCCCCHHHCCCCCCCC >Mature Secondary Structure MIRFLSFLFFLCFFSVCSAKELKIFLLTGQSNSLGAVKGSPASPELLKKYEPKETLYWHE CHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEC NFGQREGVFPGASTSWEQVRPAMPRYNGNLCMGPEYGFAFTLEKNGWFKDADVAVVKASR CCCCCCCCCCCCCCCHHHHCCCCCCCCCCEEECCCCCEEEEEECCCCCCCCCEEEEEECC DGGDNSHWQKNGQAYRTLVQAVKNACAGVDRSKYSKVEFAGLLYLQGESNAGTSVPESAS CCCCCCCHHHCCHHHHHHHHHHHHHHCCCCCHHCCEEEEEEEEEEECCCCCCCCCCHHHH RFLELLGNLAADLKPYGDTSALAAQKAVLGENANWAGKNESDPETGNLTGSLEGRDTEVQ HHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCCC GKTTRQVMKDLAESRPSLGYAPTRDLPKLTAGDQMGVHYSGQSQISIGARFAYEAARMAG CHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCEEEECHHHHHHHHHHCC KDTGSVRSGRYDLPLGSPDAWMNRKMPGKNVCVWNVASSVKPSLVSGVVKLFGIRVEDPA CCCCCCCCCEEECCCCCCCHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHEEEECCCC VKTVIVRSKGSSGDRLVIGPGGIRLAEGKNLQLRTNVQLAGRQSWNIPGGSAVEIKPSPV EEEEEEECCCCCCCEEEECCCCEEEECCCCEEEEECEEEECCCCCCCCCCCEEEECCCCC QEKAMPVRLSGQAEVHVTQAEGGGETAEAARVVLEQVLPSALKCSWTLSGKVEMTLKGME HHCCCCEEECCCEEEEEEECCCCCCHHHHHHHHHHHHCCHHHEEEEEECCEEEEEEECCC GKAVNLGKVFVKQGAVLNLNGSRPVAGSVVNQGGTVNP CCEEEHHHHHHHCCCEEEECCCCCCCCHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA