Definition | Burkholderia phymatum STM815 chromosome chromosome 1, complete sequence. |
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Accession | NC_010622 |
Length | 3,479,187 |
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The map label for this gene is (phzF1 [H]
Identifier: 186476872
GI number: 186476872
Start: 2377627
End: 2378517
Strand: Direct
Name: (phzF1 [H]
Synonym: Bphy_2119
Alternate gene names: 186476872
Gene position: 2377627-2378517 (Clockwise)
Preceding gene: 186476871
Following gene: 186476873
Centisome position: 68.34
GC content: 66.11
Gene sequence:
>891_bases ATGCAAGGGAAAACCGTTCGCTTCAAACAGGTCGACGTGTTCACGTCGGTGCCGTTCAAAGGCAATCCCCTCGCGCTGAT CTTCGATGCGGACGCACTCGATACCGAACAGATGCAGGCCATCGCGCACTGGACGAATCTGTCGGAGACCGCGTTCATGC TAAAGCCGACCGACCCGTCGGCGGATTATCGCGTGCGCATCTTCACGACGCACGGCGAGTTGCCCTTCGCCGGCCATCCG ACACTCGGGACGGCGCACGCGTGGCGCGAAGCAGGCAATCGGCCGAAGCAGCCCGGCCGCCTCGTGCAGCAATGCGCAGC GGGCCTGATCGAACTGGAGCAAGACGATAGCCGCGCCGGCGTATGGTCGTTCGCCGCGCCGCCTGCGCGCGTCACGCCGC TCGCCGAAACCGAATACGCCGCGCTTGCACTGGCGCTGCATAGCGATGCAATCGATTACACAGCCCAGCCGTGCGGCGTC GACAATGGTCCGCAATGGCTCGTCGTCCGCATGAAATCGGCAGCGGCATGCCTCGCGCTCGATCCCGATTCAGCCGCGCT TGCACGTGTCGTGCAGACCGTGGGGGCACGCGGCCTCGCCGCCTATGGCCCGCATGACGCGAACGGACCCGCGAACTATG AATTGCGCTGTCTGATGCTGGGCGGTGGCCTCGGCATCGGGGAAGACCCGGTGACAGGCAGCGCTAACGCCGCGCTCGCC AACCTGCTGACCATGCAGAATGCGCGGCCCGGCATGCAATACACGGTACGCCAGGGCACGGCGCTCGGCCGCGCGGGCGA CGTCTACGTGCGCTACGACGACGCGGCGGACAAGACGTGGATTGGCGGTGCATCGCTGACTGTCGTTGACGGCGCGTTCC GCCTGCCCTGA
Upstream 100 bases:
>100_bases CCGTCGATGATGTGAAAGCGTTATCGGCGGCGTTTTTCATGGGCGTGTGGATCATGCCGCGCGTCAACCCCCGCTCAGCC GTCGAACAGGAACGAAAACG
Downstream 100 bases:
>100_bases ACCGGCGAGCGCGATGACCTTGAATGCGTGAGACGGGATTGACATGTGCGCGTCACCTGGATGTTCTAAAAATCCGTCCG ATGCGCACACATACAATCTT
Product: PhzF family phenazine biosynthesis protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 296; Mature: 296
Protein sequence:
>296_residues MQGKTVRFKQVDVFTSVPFKGNPLALIFDADALDTEQMQAIAHWTNLSETAFMLKPTDPSADYRVRIFTTHGELPFAGHP TLGTAHAWREAGNRPKQPGRLVQQCAAGLIELEQDDSRAGVWSFAAPPARVTPLAETEYAALALALHSDAIDYTAQPCGV DNGPQWLVVRMKSAAACLALDPDSAALARVVQTVGARGLAAYGPHDANGPANYELRCLMLGGGLGIGEDPVTGSANAALA NLLTMQNARPGMQYTVRQGTALGRAGDVYVRYDDAADKTWIGGASLTVVDGAFRLP
Sequences:
>Translated_296_residues MQGKTVRFKQVDVFTSVPFKGNPLALIFDADALDTEQMQAIAHWTNLSETAFMLKPTDPSADYRVRIFTTHGELPFAGHP TLGTAHAWREAGNRPKQPGRLVQQCAAGLIELEQDDSRAGVWSFAAPPARVTPLAETEYAALALALHSDAIDYTAQPCGV DNGPQWLVVRMKSAAACLALDPDSAALARVVQTVGARGLAAYGPHDANGPANYELRCLMLGGGLGIGEDPVTGSANAALA NLLTMQNARPGMQYTVRQGTALGRAGDVYVRYDDAADKTWIGGASLTVVDGAFRLP >Mature_296_residues MQGKTVRFKQVDVFTSVPFKGNPLALIFDADALDTEQMQAIAHWTNLSETAFMLKPTDPSADYRVRIFTTHGELPFAGHP TLGTAHAWREAGNRPKQPGRLVQQCAAGLIELEQDDSRAGVWSFAAPPARVTPLAETEYAALALALHSDAIDYTAQPCGV DNGPQWLVVRMKSAAACLALDPDSAALARVVQTVGARGLAAYGPHDANGPANYELRCLMLGGGLGIGEDPVTGSANAALA NLLTMQNARPGMQYTVRQGTALGRAGDVYVRYDDAADKTWIGGASLTVVDGAFRLP
Specific function: Isomerase that catalyzes the condensation of two molecules of trans-2,3-dihydro-3-hydroxyanthranilic acid (DHHA) into the phenazine ring system. The final product is not yet known [H]
COG id: COG0384
COG function: function code R; Predicted epimerase, PhzC/PhzF homolog
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the phzF family [H]
Homologues:
Organism=Escherichia coli, GI1787737, Length=296, Percent_Identity=33.1081081081081, Blast_Score=105, Evalue=5e-24, Organism=Saccharomyces cerevisiae, GI6321818, Length=299, Percent_Identity=35.1170568561873, Blast_Score=173, Evalue=3e-44,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003719 [H]
Pfam domain/function: PF02567 PhzC-PhzF [H]
EC number: NA
Molecular weight: Translated: 31432; Mature: 31432
Theoretical pI: Translated: 5.61; Mature: 5.61
Prosite motif: PS00178 AA_TRNA_LIGASE_I
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQGKTVRFKQVDVFTSVPFKGNPLALIFDADALDTEQMQAIAHWTNLSETAFMLKPTDPS CCCCEEEEEEEEEEEECCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCEEEEEECCCCC ADYRVRIFTTHGELPFAGHPTLGTAHAWREAGNRPKQPGRLVQQCAAGLIELEQDDSRAG CCEEEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHCCEEEECCCCCCC VWSFAAPPARVTPLAETEYAALALALHSDAIDYTAQPCGVDNGPQWLVVRMKSAAACLAL EEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEE DPDSAALARVVQTVGARGLAAYGPHDANGPANYELRCLMLGGGLGIGEDPVTGSANAALA CCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCHHHHH NLLTMQNARPGMQYTVRQGTALGRAGDVYVRYDDAADKTWIGGASLTVVDGAFRLP HHHHHCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCCEEECCCEEEEECCEECCC >Mature Secondary Structure MQGKTVRFKQVDVFTSVPFKGNPLALIFDADALDTEQMQAIAHWTNLSETAFMLKPTDPS CCCCEEEEEEEEEEEECCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCEEEEEECCCCC ADYRVRIFTTHGELPFAGHPTLGTAHAWREAGNRPKQPGRLVQQCAAGLIELEQDDSRAG CCEEEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHCCEEEECCCCCCC VWSFAAPPARVTPLAETEYAALALALHSDAIDYTAQPCGVDNGPQWLVVRMKSAAACLAL EEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEE DPDSAALARVVQTVGARGLAAYGPHDANGPANYELRCLMLGGGLGIGEDPVTGSANAALA CCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCHHHHH NLLTMQNARPGMQYTVRQGTALGRAGDVYVRYDDAADKTWIGGASLTVVDGAFRLP HHHHHCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCCEEECCCEEEEECCEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 10984043 [H]