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The map label for this gene is ydcO [H]

Identifier: 186476857

GI number: 186476857

Start: 2360990

End: 2362201

Strand: Direct

Name: ydcO [H]

Synonym: Bphy_2103

Alternate gene names: 186476857

Gene position: 2360990-2362201 (Clockwise)

Preceding gene: 186476856

Following gene: 186476858

Centisome position: 67.86

GC content: 67.16

Gene sequence:

>1212_bases
ATGACCTCATCCACCCCCGAATACGCGAGCGCGATGCGCGCGCCGCTACGACCGTTCACCGATACCTCGCTGTCGGCCAT
CGTCGCCGGCTTCGTCGCGATGATGACCGGCTACACCAGTTCGCTCGTGCTGATGTTTCAGGCCGGCCGCGCCGCGCATC
TCACCGACGCGCAGATTTCGTCGTGGATCTGGGCGCTGTCGATCAGCATGGCGCTGTGCACGATCGGCCTGTCGCTGCGC
TTTCGCGCCCCCATCGTCGTCGCATGGTCGACGCCGGGCGCGGCGCTGCTCGTGTCGTCGCTGCCGCATGTCGCATATCC
GGAAGCCGTCGGCGCGTTCGTCGTGTGCGCGCTGCTGCTGACGCTGGTCGGGCTCACCGGCTGGTTCGACACGCTGATGA
AGCGGATCCCGGCGGGCATCGCTGCAGCGCTGCTGGCGGGCATTCTGTTCGAGATCGGCATCGAGATCTTTCGCGCCGCG
CAAGTTCAGACGGCGCTCGTGCTGGCGATGTTCTTCACGTATCTCGTCATCAAGCGTTTCGCATCGCGTTACGCGATCGT
TGCGACGCTCGCCGTCGGCACGGCCGTTGCTGGCGCGCTTGGATTGCTCGATTTCAGCCGCTTTCACGTGGCGTTCGCCG
TGCCCATGCTGACGGTGCCCGCTTTCTCGCTGTCGGCGGCCATCAGCATCGGCATCCCGCTGTTCGTGGTGGCGACGGCG
TCGCAGAACGTACCCGGCATCGCCGTGCTGCGCGCGGACGGCTACCCCACACCGTCTGCGCCGCTGCTCGCCACGACGGG
CATCGCCTCGCTGCTGCTCGCGCCGTTCGGCTCGCACGGCGTGAATCTGGCGGCAATCACGGCCGCCATCTGCACGGGCC
GCGAAGCTCATGAGGACCGCACGAAGCGCTATATGGCCGCCGTCTGGTGCGGCCTGTTCTACCTGATCGCGGGCATTTTC
GGCGCGACAATTGCCGCGCTGTTCGGCTCGCTGCCGAAGGCGCTGGTGGTGTCGGTTGCGGCGCTCGCGCTGTTCGGCTC
GATCATGAGCGGCCTCACGAACGCGATGCAGGACGCACGTCAGCGCGAAGCGGCGCTCGTCACGTTCATGGTAACGGCGT
CGGGACTCACCCTGCTGTCCATCGGCCCGGCGTTCTGGGGACTCGTCGCCGGCCTGGTCACGCATGCCGTGCTGAACGCG
CGGCGCGGATAA

Upstream 100 bases:

>100_bases
TGAGCGCGGCGCCGTTCGCGCCGCGGCCGGACGCCGCCCGGTGCACGTCCGTCGTGCACGCCACCTGACGACACTAGCGC
GCCACACCGAGACACACAGC

Downstream 100 bases:

>100_bases
TGCCAGGCAACTCCCGGAAGCCGTTGCCGCCTGATGCGTCCCTGTCGAAGCGCCCCTGTCAAACCAGCATCATCCGATCC
GCCATAGAATAGAAGTATCG

Product: benzoate transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 403; Mature: 402

Protein sequence:

>403_residues
MTSSTPEYASAMRAPLRPFTDTSLSAIVAGFVAMMTGYTSSLVLMFQAGRAAHLTDAQISSWIWALSISMALCTIGLSLR
FRAPIVVAWSTPGAALLVSSLPHVAYPEAVGAFVVCALLLTLVGLTGWFDTLMKRIPAGIAAALLAGILFEIGIEIFRAA
QVQTALVLAMFFTYLVIKRFASRYAIVATLAVGTAVAGALGLLDFSRFHVAFAVPMLTVPAFSLSAAISIGIPLFVVATA
SQNVPGIAVLRADGYPTPSAPLLATTGIASLLLAPFGSHGVNLAAITAAICTGREAHEDRTKRYMAAVWCGLFYLIAGIF
GATIAALFGSLPKALVVSVAALALFGSIMSGLTNAMQDARQREAALVTFMVTASGLTLLSIGPAFWGLVAGLVTHAVLNA
RRG

Sequences:

>Translated_403_residues
MTSSTPEYASAMRAPLRPFTDTSLSAIVAGFVAMMTGYTSSLVLMFQAGRAAHLTDAQISSWIWALSISMALCTIGLSLR
FRAPIVVAWSTPGAALLVSSLPHVAYPEAVGAFVVCALLLTLVGLTGWFDTLMKRIPAGIAAALLAGILFEIGIEIFRAA
QVQTALVLAMFFTYLVIKRFASRYAIVATLAVGTAVAGALGLLDFSRFHVAFAVPMLTVPAFSLSAAISIGIPLFVVATA
SQNVPGIAVLRADGYPTPSAPLLATTGIASLLLAPFGSHGVNLAAITAAICTGREAHEDRTKRYMAAVWCGLFYLIAGIF
GATIAALFGSLPKALVVSVAALALFGSIMSGLTNAMQDARQREAALVTFMVTASGLTLLSIGPAFWGLVAGLVTHAVLNA
RRG
>Mature_402_residues
TSSTPEYASAMRAPLRPFTDTSLSAIVAGFVAMMTGYTSSLVLMFQAGRAAHLTDAQISSWIWALSISMALCTIGLSLRF
RAPIVVAWSTPGAALLVSSLPHVAYPEAVGAFVVCALLLTLVGLTGWFDTLMKRIPAGIAAALLAGILFEIGIEIFRAAQ
VQTALVLAMFFTYLVIKRFASRYAIVATLAVGTAVAGALGLLDFSRFHVAFAVPMLTVPAFSLSAAISIGIPLFVVATAS
QNVPGIAVLRADGYPTPSAPLLATTGIASLLLAPFGSHGVNLAAITAAICTGREAHEDRTKRYMAAVWCGLFYLIAGIFG
ATIAALFGSLPKALVVSVAALALFGSIMSGLTNAMQDARQREAALVTFMVTASGLTLLSIGPAFWGLVAGLVTHAVLNAR
RG

Specific function: Unknown

COG id: COG3135

COG function: function code Q; Uncharacterized protein involved in benzoate metabolism

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87081909, Length=375, Percent_Identity=44.8, Blast_Score=306, Evalue=2e-84,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004711 [H]

Pfam domain/function: PF03594 BenE [H]

EC number: NA

Molecular weight: Translated: 41872; Mature: 41741

Theoretical pI: Translated: 9.83; Mature: 9.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSSTPEYASAMRAPLRPFTDTSLSAIVAGFVAMMTGYTSSLVLMFQAGRAAHLTDAQIS
CCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHEECCCCCCCCHHHHH
SWIWALSISMALCTIGLSLRFRAPIVVAWSTPGAALLVSSLPHVAYPEAVGAFVVCALLL
HHHHHHHHHHHHHHHCCCEEECCCEEEEECCCCHHHHHHCCCCCCCHHHHHHHHHHHHHH
TLVGLTGWFDTLMKRIPAGIAAALLAGILFEIGIEIFRAAQVQTALVLAMFFTYLVIKRF
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ASRYAIVATLAVGTAVAGALGLLDFSRFHVAFAVPMLTVPAFSLSAAISIGIPLFVVATA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEC
SQNVPGIAVLRADGYPTPSAPLLATTGIASLLLAPFGSHGVNLAAITAAICTGREAHEDR
CCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHH
TKRYMAAVWCGLFYLIAGIFGATIAALFGSLPKALVVSVAALALFGSIMSGLTNAMQDAR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QREAALVTFMVTASGLTLLSIGPAFWGLVAGLVTHAVLNARRG
HHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TSSTPEYASAMRAPLRPFTDTSLSAIVAGFVAMMTGYTSSLVLMFQAGRAAHLTDAQIS
CCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHEECCCCCCCCHHHHH
SWIWALSISMALCTIGLSLRFRAPIVVAWSTPGAALLVSSLPHVAYPEAVGAFVVCALLL
HHHHHHHHHHHHHHHCCCEEECCCEEEEECCCCHHHHHHCCCCCCCHHHHHHHHHHHHHH
TLVGLTGWFDTLMKRIPAGIAAALLAGILFEIGIEIFRAAQVQTALVLAMFFTYLVIKRF
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ASRYAIVATLAVGTAVAGALGLLDFSRFHVAFAVPMLTVPAFSLSAAISIGIPLFVVATA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEC
SQNVPGIAVLRADGYPTPSAPLLATTGIASLLLAPFGSHGVNLAAITAAICTGREAHEDR
CCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHH
TKRYMAAVWCGLFYLIAGIFGATIAALFGSLPKALVVSVAALALFGSIMSGLTNAMQDAR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QREAALVTFMVTASGLTLLSIGPAFWGLVAGLVTHAVLNARRG
HHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]