Definition | Burkholderia phymatum STM815 chromosome chromosome 1, complete sequence. |
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Accession | NC_010622 |
Length | 3,479,187 |
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The map label for this gene is tal
Identifier: 186476858
GI number: 186476858
Start: 2362451
End: 2363404
Strand: Direct
Name: tal
Synonym: Bphy_2104
Alternate gene names: 186476858
Gene position: 2362451-2363404 (Clockwise)
Preceding gene: 186476857
Following gene: 186476859
Centisome position: 67.9
GC content: 62.26
Gene sequence:
>954_bases ATGACTACTGCACTCGATCAACTCAAGCAATACACCACGGTCGTCGCGGACACCGGCGACTTCCAGCAACTCGCGCAGTA CAAGCCGCAGGACGCGACGACGAATCCGTCGCTGGTCCTGAAGGCCGTGCAGAAGGACGAATACAAGCCGCTGCTCGAAA AGACCGTGCGCGATCACGCATCGAAGCCCGTCGGCTCGATCATCGACAACCTGCTGATCGCCTTCGGCACGGAAATCCTG AAGATCGTCCCGGGCCGCGTGTCGACGGAAGTCGACGCCCGCCTGTCGTTCGACACGAAGGCATCGATCGACAAGGCCCA CGAACTCATCAAGATGTATGACGCGCAAGGCATCGGCCGCGAGCGCGTGCTGATCAAGCTGGCGTCGACGTGGGAAGGCA TCCGCGCCGCCGAAGTGCTGCAGAAGGACGGCATCAAGTGCAACATGACCCTGCTGTTCTCGCTGGCGCAAGCCGTCGCC GCCGCTGAAGCGGGCGCGCAGCTAATCTCGCCGTTCGTCGGCCGCATCTACGACTGGTACAAGAAGAACGCGGGCAGCAA CTGGGACGAAGCGCGCGACGGCGGCGCGAACGATCCGGGCGTGCAGTCGGTGCGCCGCATCTATGCGTACTACAAGAAGT TCGGCTATCCGACGGAAGTGATGGGCGCGAGCTTCCGTACGACCAGCCAGATTCTCGAACTGGCAGGCTGCGATCTGCTC ACGATCAGCCCCGACCTGCTGCAGAAGCTGCACGACAGCAACGACAGGATTGAGCGCAAGCTGTCGCCTGAAGCGAGCAG GAACGCCGATATCGAGCGCGTGCCGACGGACGAAGCGTCATTCCGCTTCCTCGTCAACGACGACGCGATGGCGACCGAGA AGCTCTCCGAAGGCATCCGCGTGTTCGCCGCCGATGCGATCAAGCTCGAAAAGGTGATCGAAGCGCTGCGCTAG
Upstream 100 bases:
>100_bases GACGTGAGCACCCGGCCGCCTATGCGGCTCACCGCGGCCTCGCGCCGCGTCATCATTTCCTCGACCTCGGCGCGCGTGCG CCTCGAAGCGAAGGCTCGAC
Downstream 100 bases:
>100_bases GCCGCTTCATTCCATTCGTCGTGTCAAGCGCGCGTGGCCCGCAAAGCCGCGCGCGCTTTTTGTTGGCGCAGGGTCTGTGC TCTACCACCGTCAACACAGT
Product: transaldolase B
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 317; Mature: 316
Protein sequence:
>317_residues MTTALDQLKQYTTVVADTGDFQQLAQYKPQDATTNPSLVLKAVQKDEYKPLLEKTVRDHASKPVGSIIDNLLIAFGTEIL KIVPGRVSTEVDARLSFDTKASIDKAHELIKMYDAQGIGRERVLIKLASTWEGIRAAEVLQKDGIKCNMTLLFSLAQAVA AAEAGAQLISPFVGRIYDWYKKNAGSNWDEARDGGANDPGVQSVRRIYAYYKKFGYPTEVMGASFRTTSQILELAGCDLL TISPDLLQKLHDSNDRIERKLSPEASRNADIERVPTDEASFRFLVNDDAMATEKLSEGIRVFAADAIKLEKVIEALR
Sequences:
>Translated_317_residues MTTALDQLKQYTTVVADTGDFQQLAQYKPQDATTNPSLVLKAVQKDEYKPLLEKTVRDHASKPVGSIIDNLLIAFGTEIL KIVPGRVSTEVDARLSFDTKASIDKAHELIKMYDAQGIGRERVLIKLASTWEGIRAAEVLQKDGIKCNMTLLFSLAQAVA AAEAGAQLISPFVGRIYDWYKKNAGSNWDEARDGGANDPGVQSVRRIYAYYKKFGYPTEVMGASFRTTSQILELAGCDLL TISPDLLQKLHDSNDRIERKLSPEASRNADIERVPTDEASFRFLVNDDAMATEKLSEGIRVFAADAIKLEKVIEALR >Mature_316_residues TTALDQLKQYTTVVADTGDFQQLAQYKPQDATTNPSLVLKAVQKDEYKPLLEKTVRDHASKPVGSIIDNLLIAFGTEILK IVPGRVSTEVDARLSFDTKASIDKAHELIKMYDAQGIGRERVLIKLASTWEGIRAAEVLQKDGIKCNMTLLFSLAQAVAA AEAGAQLISPFVGRIYDWYKKNAGSNWDEARDGGANDPGVQSVRRIYAYYKKFGYPTEVMGASFRTTSQILELAGCDLLT ISPDLLQKLHDSNDRIERKLSPEASRNADIERVPTDEASFRFLVNDDAMATEKLSEGIRVFAADAIKLEKVIEALR
Specific function: Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
COG id: COG0176
COG function: function code G; Transaldolase
Gene ontology:
Cell location: Cytoplasm
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the transaldolase family. Type 1 subfamily
Homologues:
Organism=Homo sapiens, GI5803187, Length=321, Percent_Identity=57.0093457943925, Blast_Score=351, Evalue=5e-97, Organism=Escherichia coli, GI1786189, Length=320, Percent_Identity=57.5, Blast_Score=336, Evalue=1e-93, Organism=Escherichia coli, GI1788807, Length=317, Percent_Identity=55.205047318612, Blast_Score=329, Evalue=1e-91, Organism=Caenorhabditis elegans, GI25153750, Length=320, Percent_Identity=55, Blast_Score=341, Evalue=3e-94, Organism=Caenorhabditis elegans, GI25153752, Length=167, Percent_Identity=55.0898203592814, Blast_Score=176, Evalue=1e-44, Organism=Caenorhabditis elegans, GI17570473, Length=95, Percent_Identity=54.7368421052632, Blast_Score=98, Evalue=6e-21, Organism=Saccharomyces cerevisiae, GI6321480, Length=323, Percent_Identity=52.0123839009288, Blast_Score=327, Evalue=1e-90, Organism=Saccharomyces cerevisiae, GI6323386, Length=321, Percent_Identity=55.7632398753894, Blast_Score=316, Evalue=4e-87, Organism=Drosophila melanogaster, GI45549185, Length=319, Percent_Identity=57.0532915360502, Blast_Score=365, Evalue=1e-101,
Paralogues:
None
Copy number: 380 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 900 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). 100 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 60 Molecules/Cell In: Stationary Phase,
Swissprot (AC and ID): TAL_BURP8 (B2JE74)
Other databases:
- EMBL: CP001043 - RefSeq: YP_001858328.1 - ProteinModelPortal: B2JE74 - SMR: B2JE74 - GeneID: 6243592 - GenomeReviews: CP001043_GR - KEGG: bph:Bphy_2104 - HOGENOM: HBG286747 - OMA: GCEILAI - ProtClustDB: PRK05269 - GO: GO:0005737 - HAMAP: MF_00492 - InterPro: IPR013785 - InterPro: IPR001585 - InterPro: IPR004730 - InterPro: IPR018225 - Gene3D: G3DSA:3.20.20.70 - PANTHER: PTHR10683 - PANTHER: PTHR10683:SF3 - TIGRFAMs: TIGR00874
Pfam domain/function: PF00923 Transaldolase
EC number: =2.2.1.2
Molecular weight: Translated: 35090; Mature: 34959
Theoretical pI: Translated: 5.53; Mature: 5.53
Prosite motif: PS01054 TRANSALDOLASE_1; PS00958 TRANSALDOLASE_2
Important sites: ACT_SITE 126-126
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTALDQLKQYTTVVADTGDFQQLAQYKPQDATTNPSLVLKAVQKDEYKPLLEKTVRDHA CCHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHC SKPVGSIIDNLLIAFGTEILKIVPGRVSTEVDARLSFDTKASIDKAHELIKMYDAQGIGR CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCEECCCHHHHHHHHHHHHHHHHCCCCCH ERVLIKLASTWEGIRAAEVLQKDGIKCNMTLLFSLAQAVAAAEAGAQLISPFVGRIYDWY HHHHEEEHHHHCHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KKNAGSNWDEARDGGANDPGVQSVRRIYAYYKKFGYPTEVMGASFRTTSQILELAGCDLL HHCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHCCCEE TISPDLLQKLHDSNDRIERKLSPEASRNADIERVPTDEASFRFLVNDDAMATEKLSEGIR EECHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHCCHH VFAADAIKLEKVIEALR HHHHHHHHHHHHHHHHC >Mature Secondary Structure TTALDQLKQYTTVVADTGDFQQLAQYKPQDATTNPSLVLKAVQKDEYKPLLEKTVRDHA CHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHC SKPVGSIIDNLLIAFGTEILKIVPGRVSTEVDARLSFDTKASIDKAHELIKMYDAQGIGR CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCEECCCHHHHHHHHHHHHHHHHCCCCCH ERVLIKLASTWEGIRAAEVLQKDGIKCNMTLLFSLAQAVAAAEAGAQLISPFVGRIYDWY HHHHEEEHHHHCHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KKNAGSNWDEARDGGANDPGVQSVRRIYAYYKKFGYPTEVMGASFRTTSQILELAGCDLL HHCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHCCCEE TISPDLLQKLHDSNDRIERKLSPEASRNADIERVPTDEASFRFLVNDDAMATEKLSEGIR EECHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHCCHH VFAADAIKLEKVIEALR HHHHHHHHHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA