Definition | Burkholderia phymatum STM815 chromosome chromosome 1, complete sequence. |
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Accession | NC_010622 |
Length | 3,479,187 |
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The map label for this gene is 186476780
Identifier: 186476780
GI number: 186476780
Start: 2276818
End: 2277576
Strand: Direct
Name: 186476780
Synonym: Bphy_2025
Alternate gene names: NA
Gene position: 2276818-2277576 (Clockwise)
Preceding gene: 186476779
Following gene: 186476781
Centisome position: 65.44
GC content: 66.01
Gene sequence:
>759_bases GTGAGTTACAAGCGCGGCCTAGCCGTTGTGTCCGGATGCGTGATTGCAGCCTTGGTGTCATTCGCCGCCACCTATCCCCG CTTCTACCCGACACCCACGCCTGTCGCGGCGCCTGCGGGCGGCACGCCCGTGAAAGCGGCTGCCCCGGCGCTGACCGTCG AACTTCCGGGCCTGCCTATTTCCACCAGTCCGCTCGCATGGTCGAAGCTGACCAGTGCCGACCATGTCGCGCTCGCGCCG TTCGAAACACAATGGGACGGCTTCAGTGAAGAGCGCAAACGCAAGTGGCTGAAAATTGCGTCGCGCTATCCGAAGATGAC GCCGGAAGCGCAAAAGCGCCTGCACGAGCGCATGGCCGAATGGGTCCGCATGACGCCCGAACAGCGGCGTGTCGCGCGCG AGAACTATCAGGTGTCGAAGGAACTGCCGCGCGAGGCGCGCCAGAGCGCGTGGAAGGCGTATCAGCAGTTGCCTGAAGAA CAGAAGCAGAAGCTCGCCGCCAGCGAGCACAAGCGGCGGCCGACCGTCGTCAGCGCACCGCCGTCGGGCAAATCCGAAAT CAAGGACATCAACCGGCTGGTAAACGGCAAGGACAAGCTCGCCAGCGTGCCGATGCCGCCGGCGACGGCAGGCGCTTCCG CCGGCGTCGCGGGGGCCGCGCAGGGCGCGCCCGCGATTCCTGCCGCCGGCAGTTTCGTGCCGGCTACGCCGACGCCAGTC TCGCCTTCCGAGGCTCCTTCCATCTTCAACGGCTCATAA
Upstream 100 bases:
>100_bases GCCGCCATGTTGAGCGACGACTTGCCGCTCAATGCCTATCTCGATCACGGGTTCAACGCGTACCTGACGCGCAGCAACCA CTGACCGGGAGAGTTGACGG
Downstream 100 bases:
>100_bases TCCATTCCAGGGAGCCGGCATCGTGCGGGCTCATCAACGGCAACCGAGGCTCAGCCCGTGTCCACTTCCGTCGACTCCGC AGCCGTGCCGCCCCCACGCG
Product: putative transmembrane protein
Products: NA
Alternate protein names: Lipoprotein
Number of amino acids: Translated: 252; Mature: 251
Protein sequence:
>252_residues MSYKRGLAVVSGCVIAALVSFAATYPRFYPTPTPVAAPAGGTPVKAAAPALTVELPGLPISTSPLAWSKLTSADHVALAP FETQWDGFSEERKRKWLKIASRYPKMTPEAQKRLHERMAEWVRMTPEQRRVARENYQVSKELPREARQSAWKAYQQLPEE QKQKLAASEHKRRPTVVSAPPSGKSEIKDINRLVNGKDKLASVPMPPATAGASAGVAGAAQGAPAIPAAGSFVPATPTPV SPSEAPSIFNGS
Sequences:
>Translated_252_residues MSYKRGLAVVSGCVIAALVSFAATYPRFYPTPTPVAAPAGGTPVKAAAPALTVELPGLPISTSPLAWSKLTSADHVALAP FETQWDGFSEERKRKWLKIASRYPKMTPEAQKRLHERMAEWVRMTPEQRRVARENYQVSKELPREARQSAWKAYQQLPEE QKQKLAASEHKRRPTVVSAPPSGKSEIKDINRLVNGKDKLASVPMPPATAGASAGVAGAAQGAPAIPAAGSFVPATPTPV SPSEAPSIFNGS >Mature_251_residues SYKRGLAVVSGCVIAALVSFAATYPRFYPTPTPVAAPAGGTPVKAAAPALTVELPGLPISTSPLAWSKLTSADHVALAPF ETQWDGFSEERKRKWLKIASRYPKMTPEAQKRLHERMAEWVRMTPEQRRVARENYQVSKELPREARQSAWKAYQQLPEEQ KQKLAASEHKRRPTVVSAPPSGKSEIKDINRLVNGKDKLASVPMPPATAGASAGVAGAAQGAPAIPAAGSFVPATPTPVS PSEAPSIFNGS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26987; Mature: 26856
Theoretical pI: Translated: 10.57; Mature: 10.57
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSYKRGLAVVSGCVIAALVSFAATYPRFYPTPTPVAAPAGGTPVKAAAPALTVELPGLPI CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCEEEEECCCCCC STSPLAWSKLTSADHVALAPFETQWDGFSEERKRKWLKIASRYPKMTPEAQKRLHERMAE CCCCCHHHHHCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH WVRMTPEQRRVARENYQVSKELPREARQSAWKAYQQLPEEQKQKLAASEHKRRPTVVSAP HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCEEECC PSGKSEIKDINRLVNGKDKLASVPMPPATAGASAGVAGAAQGAPAIPAAGSFVPATPTPV CCCHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC SPSEAPSIFNGS CCCCCCCCCCCC >Mature Secondary Structure SYKRGLAVVSGCVIAALVSFAATYPRFYPTPTPVAAPAGGTPVKAAAPALTVELPGLPI CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCEEEEECCCCCC STSPLAWSKLTSADHVALAPFETQWDGFSEERKRKWLKIASRYPKMTPEAQKRLHERMAE CCCCCHHHHHCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH WVRMTPEQRRVARENYQVSKELPREARQSAWKAYQQLPEEQKQKLAASEHKRRPTVVSAP HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCEEECC PSGKSEIKDINRLVNGKDKLASVPMPPATAGASAGVAGAAQGAPAIPAAGSFVPATPTPV CCCHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC SPSEAPSIFNGS CCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA