Definition | Burkholderia phymatum STM815 chromosome chromosome 1, complete sequence. |
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Accession | NC_010622 |
Length | 3,479,187 |
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The map label for this gene is 186476781
Identifier: 186476781
GI number: 186476781
Start: 2277634
End: 2278167
Strand: Direct
Name: 186476781
Synonym: Bphy_2026
Alternate gene names: NA
Gene position: 2277634-2278167 (Clockwise)
Preceding gene: 186476780
Following gene: 186476782
Centisome position: 65.46
GC content: 64.23
Gene sequence:
>534_bases GTGTCCACTTCCGTCGACTCCGCAGCCGTGCCGCCCCCACGCGAATCCTTAGAACCCGCTGTGCCGACTGTGCGCCGGCG GCTCGCCACGTTGATGTACGAAGGCGTGCTGCTGTTCGGCGTCGTTTTCTTCGCGGGATATCTGTTCAGCACGCTCACGC AGCAGCGCAACGGGCTCGTGCATCACAGCTGGCTCGCCGCGTGGGTGGGCCTCGTAGTCGGCGTGTATTTCGTGTGGTTC TGGACGCACGGCGGCCAAACCCTGCCGATGAAGACCTGGCGCTTGCGGGTGGTGCGCGCGAGGGATGGCGCGAAGGTTTC CGTGGCACGTGCTGTTTCGCGATATGTGTTCGCGTGGCTGTGGTTCTTGCCGCCGTTGGCTTTGCATCCTCTGCTTGGCC TCGCTGTGCCGCAGACGCTCGTGCTTGCCGGTGGGTGGTTTGTTCTTTATGCCGCGGGCGCAAGGATAGGGGTCGGGCGG CAGTTTCTTCATGATCGGCTTGCCGGGACCAAGGTCGTTGCCGTCGGCCGATGA
Upstream 100 bases:
>100_bases AGTCTCGCCTTCCGAGGCTCCTTCCATCTTCAACGGCTCATAATCCATTCCAGGGAGCCGGCATCGTGCGGGCTCATCAA CGGCAACCGAGGCTCAGCCC
Downstream 100 bases:
>100_bases GTTTTTTTTGCCTGCGGCGCAGTCGATGAATTTGTCTGCCGCGCGTCGATGCCGGTTTCCGGTTTTTCGCTTTCACTGGC ATGCGCGCTTCTGGTTTGCG
Product: RDD domain-containing protein
Products: NA
Alternate protein names: RDD Domain Containing Protein; RDD Family Protein; Transmembrane Protein; RDD Family; RDD Family Membrane Protein; RDD Domain Protein
Number of amino acids: Translated: 177; Mature: 176
Protein sequence:
>177_residues MSTSVDSAAVPPPRESLEPAVPTVRRRLATLMYEGVLLFGVVFFAGYLFSTLTQQRNGLVHHSWLAAWVGLVVGVYFVWF WTHGGQTLPMKTWRLRVVRARDGAKVSVARAVSRYVFAWLWFLPPLALHPLLGLAVPQTLVLAGGWFVLYAAGARIGVGR QFLHDRLAGTKVVAVGR
Sequences:
>Translated_177_residues MSTSVDSAAVPPPRESLEPAVPTVRRRLATLMYEGVLLFGVVFFAGYLFSTLTQQRNGLVHHSWLAAWVGLVVGVYFVWF WTHGGQTLPMKTWRLRVVRARDGAKVSVARAVSRYVFAWLWFLPPLALHPLLGLAVPQTLVLAGGWFVLYAAGARIGVGR QFLHDRLAGTKVVAVGR >Mature_176_residues STSVDSAAVPPPRESLEPAVPTVRRRLATLMYEGVLLFGVVFFAGYLFSTLTQQRNGLVHHSWLAAWVGLVVGVYFVWFW THGGQTLPMKTWRLRVVRARDGAKVSVARAVSRYVFAWLWFLPPLALHPLLGLAVPQTLVLAGGWFVLYAAGARIGVGRQ FLHDRLAGTKVVAVGR
Specific function: Unknown
COG id: COG1714
COG function: function code S; Predicted membrane protein/domain
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19566; Mature: 19435
Theoretical pI: Translated: 11.95; Mature: 11.95
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTSVDSAAVPPPRESLEPAVPTVRRRLATLMYEGVLLFGVVFFAGYLFSTLTQQRNGLV CCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH HHSWLAAWVGLVVGVYFVWFWTHGGQTLPMKTWRLRVVRARDGAKVSVARAVSRYVFAWL HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHEEEEECCCCCHHHHHHHHHHHHHHHH WFLPPLALHPLLGLAVPQTLVLAGGWFVLYAAGARIGVGRQFLHDRLAGTKVVAVGR HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCHHHHHHHHHHCCCEEEEECC >Mature Secondary Structure STSVDSAAVPPPRESLEPAVPTVRRRLATLMYEGVLLFGVVFFAGYLFSTLTQQRNGLV CCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH HHSWLAAWVGLVVGVYFVWFWTHGGQTLPMKTWRLRVVRARDGAKVSVARAVSRYVFAWL HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHEEEEECCCCCHHHHHHHHHHHHHHHH WFLPPLALHPLLGLAVPQTLVLAGGWFVLYAAGARIGVGRQFLHDRLAGTKVVAVGR HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCHHHHHHHHHHCCCEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA