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The map label for this gene is ygcF [C]

Identifier: 183222780

GI number: 183222780

Start: 3558671

End: 3559381

Strand: Direct

Name: ygcF [C]

Synonym: LEPBI_I3439

Alternate gene names: 183222780

Gene position: 3558671-3559381 (Clockwise)

Preceding gene: 183222778

Following gene: 183222781

Centisome position: 98.86

GC content: 41.35

Gene sequence:

>711_bases
ATGTACGGAAAAATTCATGAAATTTATTCATCCATTTCTGGTGAAGGGATCTCACAAGGGATCCCAACTGTCTTTGTACG
TTTTGCTGGTTGTTCCCTTCGCTGTGGTAAAACAGATACACGGTCCCTTTGGTGTGATACCCCCTATGCCCTTGGTCCAA
ACCAAGGAGAAACAAAACCACTTTCCACCATCATGGATGAAATCGTTGCCTTAGATCCAACGCATGGTTACCAAATTTTG
TTAACGGGTGGAGAACCATTGGAAGGAAAAAACCGAGACCTATCCATTTCCATTGCCGAATCAATTCATTCATTCCGAAC
ACACAACGACAAACCCTACCCTTCTTCTCGTGTCGAAACCAACGGGAGTGAAAAAATCACTCTGGATCCTTTTTTTATTT
TCACTATGGATTACAAACTTCCGGGTTCCGGGATGGAAGGCCGAATGGATCTAGAAAATTTCCAGATCTTGGAAAAGAGA
CATAATTCACTTGACGAAATTAAGTTCGTTGTGCGTGATAGAATCGACTTTGAAAGAAGTATCGAAGTCATTCGCGAACA
AAAAATACAGACAAATATATTGTATTCGCCAGTCCACGGTGAAGTGGATGCCAAAGAACTAGTTGAATGGATAAAAATAG
ACAACCCACCTAAGGGTCGTTTGTCGCTTCAAATTCATAAAGTGCTTTGGGGAAATCAGAAAGGAGTTTGA

Upstream 100 bases:

>100_bases
TTCCAATTTTGCTTCTAAAAACATGACCACAAAAGCAAAGTCCGAATTAATGTTTTCGCAAGAACAATTTCAAAGAAACT
GACAAGAAGGGAAAAACTCT

Downstream 100 bases:

>100_bases
TGGATATCCCTACTCAGTTAAGTTTAGATTTTGAAACAACGGTTGAACCAAAACAATCGAATGAGTATGGTTTTCTAATC
GACGAACCAGAGTTAGGTCT

Product: putative organic radical activating protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 236; Mature: 236

Protein sequence:

>236_residues
MYGKIHEIYSSISGEGISQGIPTVFVRFAGCSLRCGKTDTRSLWCDTPYALGPNQGETKPLSTIMDEIVALDPTHGYQIL
LTGGEPLEGKNRDLSISIAESIHSFRTHNDKPYPSSRVETNGSEKITLDPFFIFTMDYKLPGSGMEGRMDLENFQILEKR
HNSLDEIKFVVRDRIDFERSIEVIREQKIQTNILYSPVHGEVDAKELVEWIKIDNPPKGRLSLQIHKVLWGNQKGV

Sequences:

>Translated_236_residues
MYGKIHEIYSSISGEGISQGIPTVFVRFAGCSLRCGKTDTRSLWCDTPYALGPNQGETKPLSTIMDEIVALDPTHGYQIL
LTGGEPLEGKNRDLSISIAESIHSFRTHNDKPYPSSRVETNGSEKITLDPFFIFTMDYKLPGSGMEGRMDLENFQILEKR
HNSLDEIKFVVRDRIDFERSIEVIREQKIQTNILYSPVHGEVDAKELVEWIKIDNPPKGRLSLQIHKVLWGNQKGV
>Mature_236_residues
MYGKIHEIYSSISGEGISQGIPTVFVRFAGCSLRCGKTDTRSLWCDTPYALGPNQGETKPLSTIMDEIVALDPTHGYQIL
LTGGEPLEGKNRDLSISIAESIHSFRTHNDKPYPSSRVETNGSEKITLDPFFIFTMDYKLPGSGMEGRMDLENFQILEKR
HNSLDEIKFVVRDRIDFERSIEVIREQKIQTNILYSPVHGEVDAKELVEWIKIDNPPKGRLSLQIHKVLWGNQKGV

Specific function: Unknown

COG id: COG0602

COG function: function code O; Organic radical activating enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 26709; Mature: 26709

Theoretical pI: Translated: 6.17; Mature: 6.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYGKIHEIYSSISGEGISQGIPTVFVRFAGCSLRCGKTDTRSLWCDTPYALGPNQGETKP
CCCHHHHHHHHHCCCCCCCCCHHEEHHHCCCEEECCCCCCCEEEECCCCCCCCCCCCCCH
LSTIMDEIVALDPTHGYQILLTGGEPLEGKNRDLSISIAESIHSFRTHNDKPYPSSRVET
HHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCEEEEHHHHHHHHHHCCCCCCCCCCCCCC
NGSEKITLDPFFIFTMDYKLPGSGMEGRMDLENFQILEKRHNSLDEIKFVVRDRIDFERS
CCCCEEEECEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCHHHH
IEVIREQKIQTNILYSPVHGEVDAKELVEWIKIDNPPKGRLSLQIHKVLWGNQKGV
HHHHHHHHHHHCEEEECCCCCCCHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCC
>Mature Secondary Structure
MYGKIHEIYSSISGEGISQGIPTVFVRFAGCSLRCGKTDTRSLWCDTPYALGPNQGETKP
CCCHHHHHHHHHCCCCCCCCCHHEEHHHCCCEEECCCCCCCEEEECCCCCCCCCCCCCCH
LSTIMDEIVALDPTHGYQILLTGGEPLEGKNRDLSISIAESIHSFRTHNDKPYPSSRVET
HHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCEEEEHHHHHHHHHHCCCCCCCCCCCCCC
NGSEKITLDPFFIFTMDYKLPGSGMEGRMDLENFQILEKRHNSLDEIKFVVRDRIDFERS
CCCCEEEECEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCHHHH
IEVIREQKIQTNILYSPVHGEVDAKELVEWIKIDNPPKGRLSLQIHKVLWGNQKGV
HHHHHHHHHHHCEEEECCCCCCCHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]