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The map label for this gene is ykgD [C]

Identifier: 183222343

GI number: 183222343

Start: 3102755

End: 3103651

Strand: Reverse

Name: ykgD [C]

Synonym: LEPBI_I2996

Alternate gene names: 183222343

Gene position: 3103651-3102755 (Counterclockwise)

Preceding gene: 183222345

Following gene: 183222336

Centisome position: 86.22

GC content: 37.01

Gene sequence:

>897_bases
ATGGACTTACTTTCGGACATTTTGTTTTCTGCAGGTTGGAAAAATGACTTATTATCAAAAGGTCAAATCTTTCAAAGTTT
TGGATTTCATTTTCCATGTGAAAGGAGTGGTGGTTTCCATGTTGTCACACAAGGCAGCTGTTATGCGAGGATAGGAAAAC
AAATCATCCCATTGCAAAAAGGAGATTTACTCTTTATCACAAGAGGGGTCCATCACGAATTACTCTCCGATCCCAAAGCT
AAAGTTGTGACGATCGAACGATTTTTACATGAAAAAAATAATCAAAAAATAGACCAAAACCCAGTGACAACATTTGTTTC
TGTTCGTTATGAAGTGCCGGATGGTCCAGTACATCCACTCCTTCTGGAGTTACCTGATTATATTTTGATTCCTTATGCAA
GTATCCAGAAACACCATTCGCTCGAAGACTTTATCCAAATTTTGTCCAAGGAATTGGAGCTCAATTTAGGAACTGATTTG
ATTGTGCAAAGATTAACGGATATTATGTTGTATTATATGATCCGGATTTGGTTACAACAAGAAGAAAATTCACCTGTCGG
TTGGATCAAAGCATTCCATGATAAAACAGTCCTATACGCTTTGGAAAAACTACATAATGCATTTTCTAAAGAATGGACGA
TTGAATCATTAGCAAAAGAAACGGGAGTTTCACGAGCTAACTTAGCCAACAAATTTCGTGATGTTCTTGGTATTCCCCCG
ATGGAATATTTGGCAAAACTTAGAATGGAAAAAGCAAAACAATTATTCCAGAAAGGAAATATGGGTCTCGAAGAAATTGC
GCAAAATGTGGGTTATGCGTCCGCATTTTCTTTTTCAAAGGCATACAAACGAATTTATGGAAATTCACCGAGCCGAGAAT
GGAAACGAGTTATCTAA

Upstream 100 bases:

>100_bases
TATCACAGAAACCTAGACTTCCTATGTCGAAAAATATTAAAAAAATATCCAAAAGTATAAAAGAGTAGACATCTGGTGAA
AAATTCCGGAAAAAGTAGGT

Downstream 100 bases:

>100_bases
CAAAGTTCGAATACTTTCCAGTTGGTTTTTTTTTGGTAAAAATGTTGGTTGGTTTCGAAAGATTTCGGCCGCCTTTCGGA
TTTTAATGGTTTCAGGCAAC

Product: putative AraC-type transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 298; Mature: 298

Protein sequence:

>298_residues
MDLLSDILFSAGWKNDLLSKGQIFQSFGFHFPCERSGGFHVVTQGSCYARIGKQIIPLQKGDLLFITRGVHHELLSDPKA
KVVTIERFLHEKNNQKIDQNPVTTFVSVRYEVPDGPVHPLLLELPDYILIPYASIQKHHSLEDFIQILSKELELNLGTDL
IVQRLTDIMLYYMIRIWLQQEENSPVGWIKAFHDKTVLYALEKLHNAFSKEWTIESLAKETGVSRANLANKFRDVLGIPP
MEYLAKLRMEKAKQLFQKGNMGLEEIAQNVGYASAFSFSKAYKRIYGNSPSREWKRVI

Sequences:

>Translated_298_residues
MDLLSDILFSAGWKNDLLSKGQIFQSFGFHFPCERSGGFHVVTQGSCYARIGKQIIPLQKGDLLFITRGVHHELLSDPKA
KVVTIERFLHEKNNQKIDQNPVTTFVSVRYEVPDGPVHPLLLELPDYILIPYASIQKHHSLEDFIQILSKELELNLGTDL
IVQRLTDIMLYYMIRIWLQQEENSPVGWIKAFHDKTVLYALEKLHNAFSKEWTIESLAKETGVSRANLANKFRDVLGIPP
MEYLAKLRMEKAKQLFQKGNMGLEEIAQNVGYASAFSFSKAYKRIYGNSPSREWKRVI
>Mature_298_residues
MDLLSDILFSAGWKNDLLSKGQIFQSFGFHFPCERSGGFHVVTQGSCYARIGKQIIPLQKGDLLFITRGVHHELLSDPKA
KVVTIERFLHEKNNQKIDQNPVTTFVSVRYEVPDGPVHPLLLELPDYILIPYASIQKHHSLEDFIQILSKELELNLGTDL
IVQRLTDIMLYYMIRIWLQQEENSPVGWIKAFHDKTVLYALEKLHNAFSKEWTIESLAKETGVSRANLANKFRDVLGIPP
MEYLAKLRMEKAKQLFQKGNMGLEEIAQNVGYASAFSFSKAYKRIYGNSPSREWKRVI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786496, Length=265, Percent_Identity=26.0377358490566, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI87082197, Length=105, Percent_Identity=28.5714285714286, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 34240; Mature: 34240

Theoretical pI: Translated: 8.90; Mature: 8.90

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLLSDILFSAGWKNDLLSKGQIFQSFGFHFPCERSGGFHVVTQGSCYARIGKQIIPLQK
CCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHCCHHCCCCC
GDLLFITRGVHHELLSDPKAKVVTIERFLHEKNNQKIDQNPVTTFVSVRYEVPDGPVHPL
CCEEEEECCHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEECCCCCCCHH
LLELPDYILIPYASIQKHHSLEDFIQILSKELELNLGTDLIVQRLTDIMLYYMIRIWLQQ
HHHCCCCEEECCHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
EENSPVGWIKAFHDKTVLYALEKLHNAFSKEWTIESLAKETGVSRANLANKFRDVLGIPP
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCC
MEYLAKLRMEKAKQLFQKGNMGLEEIAQNVGYASAFSFSKAYKRIYGNSPSREWKRVI
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHCC
>Mature Secondary Structure
MDLLSDILFSAGWKNDLLSKGQIFQSFGFHFPCERSGGFHVVTQGSCYARIGKQIIPLQK
CCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHCCHHCCCCC
GDLLFITRGVHHELLSDPKAKVVTIERFLHEKNNQKIDQNPVTTFVSVRYEVPDGPVHPL
CCEEEEECCHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEECCCCCCCHH
LLELPDYILIPYASIQKHHSLEDFIQILSKELELNLGTDLIVQRLTDIMLYYMIRIWLQQ
HHHCCCCEEECCHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
EENSPVGWIKAFHDKTVLYALEKLHNAFSKEWTIESLAKETGVSRANLANKFRDVLGIPP
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCC
MEYLAKLRMEKAKQLFQKGNMGLEEIAQNVGYASAFSFSKAYKRIYGNSPSREWKRVI
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1332944 [H]