| Definition | Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)' chromosome chromosome I, complete sequence. |
|---|---|
| Accession | NC_010602 |
| Length | 3,599,677 |
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The map label for this gene is 183221852
Identifier: 183221852
GI number: 183221852
Start: 2566442
End: 2568610
Strand: Reverse
Name: 183221852
Synonym: LEPBI_I2485
Alternate gene names: NA
Gene position: 2568610-2566442 (Counterclockwise)
Preceding gene: 183221854
Following gene: 183221851
Centisome position: 71.36
GC content: 42.0
Gene sequence:
>2169_bases ATGAATTCCCAAATAAGTCCCTTGGTTCGCGTCAGTGTATCCATAGTCACCTGCCTTTTTGTTTTGGCTTGTTCCGACAA AAAACCGTCCCAGTCCAATACCGCCATACTAGGTTTAGTTGGTGCAGATCAAGTTGAAAGTTCAAAGGCAGACAATGCAG ATCTATTGTTTAGTTCTGGTGTGAATCGCGCTGTAGCACCTAGTCTTGGTTCGTCGCCGTATTTAGTTGGTGTTGGAATT TCTGACATCACAGGCCCTGCCGCAGAAGTAGGGATGATGGGATTTGCGGAAACCGCACAAAAGACAGAAGGGATTTATAT GCGTTTGTGGTCTAGGGCATACATCATTGGTGATGCTTCTAAACGTGTGGTTTTTGTCAGTGCTGACCTAGGCATGATCT TTCAATCCATCAAACAAGCAGTGAGTAAAAAAATTGCAACCGATTCCGAACTTGCTCCTTTTTATTCAGAAGCAAACGTT TTGTTATCGGCAACACACACTCATAGTGGCCCTGGTGGGTATTCACATTACTTTTTATACAATGCGACAACTTCTGGATT CATTAAAGAAAATTTCGATGTCATTGTGAATGGAATCTACAAATCCATTAAATTGGCGCATCAAAATTTAGTTCCTGGAA ATGTTTATGTCAACCAAGGGGAACTAACAGATGCAAGTAAAAATCGTTCTGTAGCTGCTTATGATAAAAACCCTGCTAGT GAACGTAATTTTTATCCATCAAATGTAGACCAAACGATGACTCTACTTAAATTAGTCGCGGCGGATGGAAGGGAATTGGG AATGGTGAACTGGTTTGCCGTACACCCAACCAATGTTGGTCCAACTAACAAACTCATTGGGGGTGATAATAAAGGCATAG CTTCGTATTTATTTGAAAAAAACAAAGGAACTAATTATTCATCGAATCAAACATTTGTGGCAGCTTTTGCACAATCCAAT TCTGGAGACGTAACTCCCAATTTGTGGGGTCCAGCAGATGGTGTAAATGATTATGCCCGACAAAATACAATTGCAAACAA ACAGTATCAAAAGGCAGTGAGTCTTTACCAGTCGGCAAATACGCAAGTGACTGGTACCATTGACTTTCGTCATACGTATG TTAATTTTTCAAACTTGTATGTGAGTAGCGTTGGAACATCAACTTGTCCTGCCGGAATGGGAGCATCTTTTTCTGCGGGA AGTGTGGAAGACAATGCAGTCTCCGTTGATTTTTTTGACGAAGGAACGACTGTTGATTCCTTGGATTGGAATTCCAATGC AGCCGATGCATTCAAAGCAAGTTTTCTTGGTGGAGCCCTTGGCGTATTATGGCCAGCTTCTGTGAGTGAGTCCTACAAAT TATGCCATGCTGAAAAACCAGTCCTCATTCCAACAGGTGTAGCTAGTTTTGATGGAAATCCTTGGACACCTCCTATCATC CCAATTCAAATTGTAAAGATTGGAAATTTATCCATTCTTGCGATCCCAGCAGAAGTATCCACGATGGCTGGAAGACGGAT TCGTTCTCTTGTCAAAAACATTATGGAAAATGATTACACTGTCATTGCAGCACTTTCCAATTCCTATACATCCTATCTCA CAACGAGAGAAGAGTATTCTTCTCAGCAGTATGAAGGGGCATCAACTCAGTTTGGTCCTAATACTTTAAAAGCCTACGAA CAAGAATTTGGTAAGTTAGCATCGGCATTACGAAATGGTGCAACGGTTCCAGGCGGACCTACACCTCCTGATCTTACAAA CAACCAAGCTACCTTTCAAACGGGAGTGGTGTTTGATGATGTTCCCCTCTTTAAAAGTTTTGGGAATGTATTCACACAAC CGTCAGCAACCTATGCAAGTGGTGCAAAGGTAACAGCTGTTTTCTGGGGAGCTCATCCAAAAAATAATATGTTGATCGGG AGTAGTTTTGTGGATATTGAACGCCAAAATGGATCCACATGGACTGTTGTGGCTCGCGACAATGACCCTTCGACCACTTA TAAATGGCAAAGAGATGGGATCGCTTATTCCAAAATTACAACCACTTGGGATACAACCTCCTATCCAAAAGGTACTTACC GCATTCGCCATCGAGGACATTGGAAATCGGGATGGACAGGAGCGATTAGTTCCTACCAAGGCGTGACAAACAATTTTGTA ATCCAATAG
Upstream 100 bases:
>100_bases CATCGTTTAGACTTAAGTTCCTGATTTGACCCAAGGGTTCCCTTCGGACAGATTGATGCGAAAAATGTTAGATTGAGAAA TTTAGATTCGGAGAGAGTAT
Downstream 100 bases:
>100_bases GAATATCTGAACAATCACCTCGCCTGACCCCTAAAGGGTCAGGTATTTTTCTTTGCAACGGGATTGACTGGGTGAGATTC CTTAAGATGCTCGTACTATG
Product: putative neutral/alkaline ceramidase
Products: NA
Alternate protein names: N-CDase; NCDase; Acylsphingosine deacylase; N-acylsphingosine amidohydrolase [H]
Number of amino acids: Translated: 722; Mature: 722
Protein sequence:
>722_residues MNSQISPLVRVSVSIVTCLFVLACSDKKPSQSNTAILGLVGADQVESSKADNADLLFSSGVNRAVAPSLGSSPYLVGVGI SDITGPAAEVGMMGFAETAQKTEGIYMRLWSRAYIIGDASKRVVFVSADLGMIFQSIKQAVSKKIATDSELAPFYSEANV LLSATHTHSGPGGYSHYFLYNATTSGFIKENFDVIVNGIYKSIKLAHQNLVPGNVYVNQGELTDASKNRSVAAYDKNPAS ERNFYPSNVDQTMTLLKLVAADGRELGMVNWFAVHPTNVGPTNKLIGGDNKGIASYLFEKNKGTNYSSNQTFVAAFAQSN SGDVTPNLWGPADGVNDYARQNTIANKQYQKAVSLYQSANTQVTGTIDFRHTYVNFSNLYVSSVGTSTCPAGMGASFSAG SVEDNAVSVDFFDEGTTVDSLDWNSNAADAFKASFLGGALGVLWPASVSESYKLCHAEKPVLIPTGVASFDGNPWTPPII PIQIVKIGNLSILAIPAEVSTMAGRRIRSLVKNIMENDYTVIAALSNSYTSYLTTREEYSSQQYEGASTQFGPNTLKAYE QEFGKLASALRNGATVPGGPTPPDLTNNQATFQTGVVFDDVPLFKSFGNVFTQPSATYASGAKVTAVFWGAHPKNNMLIG SSFVDIERQNGSTWTVVARDNDPSTTYKWQRDGIAYSKITTTWDTTSYPKGTYRIRHRGHWKSGWTGAISSYQGVTNNFV IQ
Sequences:
>Translated_722_residues MNSQISPLVRVSVSIVTCLFVLACSDKKPSQSNTAILGLVGADQVESSKADNADLLFSSGVNRAVAPSLGSSPYLVGVGI SDITGPAAEVGMMGFAETAQKTEGIYMRLWSRAYIIGDASKRVVFVSADLGMIFQSIKQAVSKKIATDSELAPFYSEANV LLSATHTHSGPGGYSHYFLYNATTSGFIKENFDVIVNGIYKSIKLAHQNLVPGNVYVNQGELTDASKNRSVAAYDKNPAS ERNFYPSNVDQTMTLLKLVAADGRELGMVNWFAVHPTNVGPTNKLIGGDNKGIASYLFEKNKGTNYSSNQTFVAAFAQSN SGDVTPNLWGPADGVNDYARQNTIANKQYQKAVSLYQSANTQVTGTIDFRHTYVNFSNLYVSSVGTSTCPAGMGASFSAG SVEDNAVSVDFFDEGTTVDSLDWNSNAADAFKASFLGGALGVLWPASVSESYKLCHAEKPVLIPTGVASFDGNPWTPPII PIQIVKIGNLSILAIPAEVSTMAGRRIRSLVKNIMENDYTVIAALSNSYTSYLTTREEYSSQQYEGASTQFGPNTLKAYE QEFGKLASALRNGATVPGGPTPPDLTNNQATFQTGVVFDDVPLFKSFGNVFTQPSATYASGAKVTAVFWGAHPKNNMLIG SSFVDIERQNGSTWTVVARDNDPSTTYKWQRDGIAYSKITTTWDTTSYPKGTYRIRHRGHWKSGWTGAISSYQGVTNNFV IQ >Mature_722_residues MNSQISPLVRVSVSIVTCLFVLACSDKKPSQSNTAILGLVGADQVESSKADNADLLFSSGVNRAVAPSLGSSPYLVGVGI SDITGPAAEVGMMGFAETAQKTEGIYMRLWSRAYIIGDASKRVVFVSADLGMIFQSIKQAVSKKIATDSELAPFYSEANV LLSATHTHSGPGGYSHYFLYNATTSGFIKENFDVIVNGIYKSIKLAHQNLVPGNVYVNQGELTDASKNRSVAAYDKNPAS ERNFYPSNVDQTMTLLKLVAADGRELGMVNWFAVHPTNVGPTNKLIGGDNKGIASYLFEKNKGTNYSSNQTFVAAFAQSN SGDVTPNLWGPADGVNDYARQNTIANKQYQKAVSLYQSANTQVTGTIDFRHTYVNFSNLYVSSVGTSTCPAGMGASFSAG SVEDNAVSVDFFDEGTTVDSLDWNSNAADAFKASFLGGALGVLWPASVSESYKLCHAEKPVLIPTGVASFDGNPWTPPII PIQIVKIGNLSILAIPAEVSTMAGRRIRSLVKNIMENDYTVIAALSNSYTSYLTTREEYSSQQYEGASTQFGPNTLKAYE QEFGKLASALRNGATVPGGPTPPDLTNNQATFQTGVVFDDVPLFKSFGNVFTQPSATYASGAKVTAVFWGAHPKNNMLIG SSFVDIERQNGSTWTVVARDNDPSTTYKWQRDGIAYSKITTTWDTTSYPKGTYRIRHRGHWKSGWTGAISSYQGVTNNFV IQ
Specific function: Hydrolyzes the ceramides into sphingosine and free fatty acid at an optimal pH of 8-9 [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Secreted (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the neutral ceramidase family [H]
Homologues:
Organism=Homo sapiens, GI221218981, Length=675, Percent_Identity=36.7407407407407, Blast_Score=415, Evalue=1e-116, Organism=Homo sapiens, GI221307475, Length=652, Percent_Identity=36.5030674846626, Blast_Score=390, Evalue=1e-108, Organism=Drosophila melanogaster, GI24651405, Length=723, Percent_Identity=33.8865836791148, Blast_Score=390, Evalue=1e-108, Organism=Drosophila melanogaster, GI24651403, Length=723, Percent_Identity=33.8865836791148, Blast_Score=390, Evalue=1e-108, Organism=Drosophila melanogaster, GI24651401, Length=723, Percent_Identity=33.8865836791148, Blast_Score=390, Evalue=1e-108, Organism=Drosophila melanogaster, GI24651397, Length=723, Percent_Identity=33.8865836791148, Blast_Score=390, Evalue=1e-108, Organism=Drosophila melanogaster, GI24651399, Length=723, Percent_Identity=33.8865836791148, Blast_Score=390, Evalue=1e-108,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006823 [H]
Pfam domain/function: NA
EC number: =3.5.1.23 [H]
Molecular weight: Translated: 77715; Mature: 77715
Theoretical pI: Translated: 7.06; Mature: 7.06
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNSQISPLVRVSVSIVTCLFVLACSDKKPSQSNTAILGLVGADQVESSKADNADLLFSSG CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCHHCCCCCCCCEEEEECC VNRAVAPSLGSSPYLVGVGISDITGPAAEVGMMGFAETAQKTEGIYMRLWSRAYIIGDAS CCCCCCCCCCCCCEEEEECCHHCCCCHHHHHHHHHHHHHHHCCCEEEEEECEEEEEECCC KRVVFVSADLGMIFQSIKQAVSKKIATDSELAPFYSEANVLLSATHTHSGPGGYSHYFLY CEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEE NATTSGFIKENFDVIVNGIYKSIKLAHQNLVPGNVYVNQGELTDASKNRSVAAYDKNPAS ECCCCCCHHCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCEEEEECCCCCC ERNFYPSNVDQTMTLLKLVAADGRELGMVNWFAVHPTNVGPTNKLIGGDNKGIASYLFEK CCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHEEC NKGTNYSSNQTFVAAFAQSNSGDVTPNLWGPADGVNDYARQNTIANKQYQKAVSLYQSAN CCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC TQVTGTIDFRHTYVNFSNLYVSSVGTSTCPAGMGASFSAGSVEDNAVSVDFFDEGTTVDS CEEEEEEEEEEEEEEECCEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEC LDWNSNAADAFKASFLGGALGVLWPASVSESYKLCHAEKPVLIPTGVASFDGNPWTPPII CCCCCCCHHHHHHHHHCCHHHHCCCCCCCCCHHHHCCCCCEEEECCCCCCCCCCCCCCEE PIQIVKIGNLSILAIPAEVSTMAGRRIRSLVKNIMENDYTVIAALSNSYTSYLTTREEYS EEEEEEECCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHEEEHHHHC SQQYEGASTQFGPNTLKAYEQEFGKLASALRNGATVPGGPTPPDLTNNQATFQTGVVFDD CHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCEECC VPLFKSFGNVFTQPSATYASGAKVTAVFWGAHPKNNMLIGSSFVDIERQNGSTWTVVARD CHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCEEEECCEEEEEECCCCEEEEEEEC NDPSTTYKWQRDGIAYSKITTTWDTTSYPKGTYRIRHRGHWKSGWTGAISSYQGVTNNFV CCCCCCEEEECCCEEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCHHHHCCCCCCCCEE IQ EC >Mature Secondary Structure MNSQISPLVRVSVSIVTCLFVLACSDKKPSQSNTAILGLVGADQVESSKADNADLLFSSG CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCHHCCCCCCCCEEEEECC VNRAVAPSLGSSPYLVGVGISDITGPAAEVGMMGFAETAQKTEGIYMRLWSRAYIIGDAS CCCCCCCCCCCCCEEEEECCHHCCCCHHHHHHHHHHHHHHHCCCEEEEEECEEEEEECCC KRVVFVSADLGMIFQSIKQAVSKKIATDSELAPFYSEANVLLSATHTHSGPGGYSHYFLY CEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEE NATTSGFIKENFDVIVNGIYKSIKLAHQNLVPGNVYVNQGELTDASKNRSVAAYDKNPAS ECCCCCCHHCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCEEEEECCCCCC ERNFYPSNVDQTMTLLKLVAADGRELGMVNWFAVHPTNVGPTNKLIGGDNKGIASYLFEK CCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHEEC NKGTNYSSNQTFVAAFAQSNSGDVTPNLWGPADGVNDYARQNTIANKQYQKAVSLYQSAN CCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC TQVTGTIDFRHTYVNFSNLYVSSVGTSTCPAGMGASFSAGSVEDNAVSVDFFDEGTTVDS CEEEEEEEEEEEEEEECCEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEC LDWNSNAADAFKASFLGGALGVLWPASVSESYKLCHAEKPVLIPTGVASFDGNPWTPPII CCCCCCCHHHHHHHHHCCHHHHCCCCCCCCCHHHHCCCCCEEEECCCCCCCCCCCCCCEE PIQIVKIGNLSILAIPAEVSTMAGRRIRSLVKNIMENDYTVIAALSNSYTSYLTTREEYS EEEEEEECCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHEEEHHHHC SQQYEGASTQFGPNTLKAYEQEFGKLASALRNGATVPGGPTPPDLTNNQATFQTGVVFDD CHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCEECC VPLFKSFGNVFTQPSATYASGAKVTAVFWGAHPKNNMLIGSSFVDIERQNGSTWTVVARD CHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCEEEECCEEEEEECCCCEEEEEEEC NDPSTTYKWQRDGIAYSKITTTWDTTSYPKGTYRIRHRGHWKSGWTGAISSYQGVTNNFV CCCCCCEEEECCCEEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCHHHHCCCCCCCCEE IQ EC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10593963; 10984043 [H]