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The map label for this gene is ygaV [H]

Identifier: 183221363

GI number: 183221363

Start: 2059418

End: 2059717

Strand: Direct

Name: ygaV [H]

Synonym: LEPBI_I1981

Alternate gene names: 183221363

Gene position: 2059418-2059717 (Clockwise)

Preceding gene: 183221362

Following gene: 183221366

Centisome position: 57.21

GC content: 36.0

Gene sequence:

>300_bases
ATGAAAATAAAAACAGAACTTTCGAAACAACAATTGGAACAAGCGATCAAAGGAATACAAGGGATTGCGCATCCAATTCG
TTTACTCATCCTTTATACCCTCGCCAAAGAAGAAAAAACTGTTGGCCAACTTGTAGAATTACTGGGAACAAGCCAATCAG
CAGCCTCTCAACACTTAAGCAAAATGAAAAACAATGGAATATTAGAATCAAGAAAATCTTCGAACCAAGTCTTTTATCGT
TTGAAAGACGCGAAGTTCAAAGATCTCATCCAAACCATTGTGAAAGTGTACAAAAAGTAA

Upstream 100 bases:

>100_bases
GGTACGCTCATTGATTCATTATTTTTTTAACATTCTGCAAAAATTTCGTAGGTAAATAAGGTATTCATTCGTCATAAGGA
TATAACGGAAATCCTTACTG

Downstream 100 bases:

>100_bases
GCGTCATTTCGCCTCTTGTTCTAAGAGGTGGACATATTCTTGAATGGAATCCTGGAGGTTGGTAAAACCAAAGGGATAGC
CAACTCCTGCTAACTTTTCC

Product: ArsR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 99; Mature: 99

Protein sequence:

>99_residues
MKIKTELSKQQLEQAIKGIQGIAHPIRLLILYTLAKEEKTVGQLVELLGTSQSAASQHLSKMKNNGILESRKSSNQVFYR
LKDAKFKDLIQTIVKVYKK

Sequences:

>Translated_99_residues
MKIKTELSKQQLEQAIKGIQGIAHPIRLLILYTLAKEEKTVGQLVELLGTSQSAASQHLSKMKNNGILESRKSSNQVFYR
LKDAKFKDLIQTIVKVYKK
>Mature_99_residues
MKIKTELSKQQLEQAIKGIQGIAHPIRLLILYTLAKEEKTVGQLVELLGTSQSAASQHLSKMKNNGILESRKSSNQVFYR
LKDAKFKDLIQTIVKVYKK

Specific function: Functions as transcription repressor (Probable) [H]

COG id: COG0640

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH arsR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789021, Length=96, Percent_Identity=36.4583333333333, Blast_Score=67, Evalue=2e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001845
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01022 HTH_5 [H]

EC number: NA

Molecular weight: Translated: 11226; Mature: 11226

Theoretical pI: Translated: 10.69; Mature: 10.69

Prosite motif: PS50987 HTH_ARSR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIKTELSKQQLEQAIKGIQGIAHPIRLLILYTLAKEEKTVGQLVELLGTSQSAASQHLS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
KMKNNGILESRKSSNQVFYRLKDAKFKDLIQTIVKVYKK
HHHCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKIKTELSKQQLEQAIKGIQGIAHPIRLLILYTLAKEEKTVGQLVELLGTSQSAASQHLS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
KMKNNGILESRKSSNQVFYRLKDAKFKDLIQTIVKVYKK
HHHCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503 [H]