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The map label for this gene is sufD [H]

Identifier: 183221302

GI number: 183221302

Start: 2007800

End: 2008963

Strand: Reverse

Name: sufD [H]

Synonym: LEPBI_I1919

Alternate gene names: 183221302

Gene position: 2008963-2007800 (Counterclockwise)

Preceding gene: 183221303

Following gene: 183221301

Centisome position: 55.81

GC content: 38.14

Gene sequence:

>1164_bases
ATGAATTCCTCACTCATCAAAAATCATTTTATATTAAACCAAAAAAAACGAAATCAATTTTGTTCGTCTCTTCTAGGTGA
TTGGGAGGTTTTGGCTCTTCCCACAGAAAAAGATGAATCCTATCGTAAGTTTCCTATTAGTTCCATTGATTGGAATGAAC
TTGGTTTTGATCCTAAGCTCAAAAATGATCATTACGAAGGGCAAACCGACGATTCTGCGAATCCTTTGGTATCGGAGGAT
ACCTTGGATGTTATTTTGAATTTGGTGAAACACCATTTGCCAAAAGATTATTTTACTTATGTTTCTGTTTTGTTTGCAAG
AGAGATTCAAATTGTGGTCTGCGAAGATGGAACAAACGATGTCTATCGCAGTTTGTTAGGAGACGATGCTCGGTCCTTGG
TTCGAATTTTTTATGTTCCGAGAGGGTATACGTCCCAAATCAAATTATACACAGAAACAAAACATGATACTGAACGACTC
CACTTACAAACCATATTTGATGTTTTTGTTTCAGAAGGGGATTCTCATGTTGAAATCTTGGATGAAGAAAATTGTGATGA
AGACCTCATCCAATTTAGGAGTGTCCTTGTTTTAACCAAAGAAAATGCCTCCGTAAAACTGCACCATTTCCCTTTTGGTG
GTTTTCGTTCAAAATTGTTTTTACATTCTCATTTATTGGGTAAAGGGGCAGAGGTGACAATCGATGGAGTGTCTGCACTT
TCCAAAAGGAACCTAAAAGATTTGGATATGGAAATGATCCATCATGCAGACCATACGACAAGTAAAATCAGTTATAAAAC
AATTGTCACTGACAGGTCCCATCATATTTTTACAGGTAATTTGATCATCCCACCTAACTTAAAAAAAGTGGTGGCCCACC
AAGAGTCATTCAATCTCTCGCTAAATAAAAAAGCAAGAGCGGAAGCCAATCCAAAACTCGAAGTTCTTGCCGAAGATGTT
TCATGTACCCATGGTGCTACCGTAGGGGATATTGATGAAGAACAGTATTTTTATCTTTTGTCGCGGGGTTTGAGCCCTGA
AGAATCAAAATCACTGCTAGTCACTGCATTCTACGGGGAAACCATCCAACGAATTGGTTTTTCGGATCAGATCAAAGAAG
GATTGGAATCTACCATTCATGGTTTACTTGTGGGAGGGAAATGA

Upstream 100 bases:

>100_bases
TGTTTGCTGATGGTCGCATTTTAGAGACTGGTGGAAAAGACCTTTCCTTAAAATTAGAAGAGGTTGGTTATGATTGGATT
TTGGAGAGAGAAGGGGTCAA

Downstream 100 bases:

>100_bases
TGGCGTTTAAAAAATTAATTTCCATTCAGGAAATTGAAGAAGGGAAACTTTCTGTCATCAAAACTCGGCATTTTTCCGTT
GTTGTCACCAAATGGCAAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 387; Mature: 387

Protein sequence:

>387_residues
MNSSLIKNHFILNQKKRNQFCSSLLGDWEVLALPTEKDESYRKFPISSIDWNELGFDPKLKNDHYEGQTDDSANPLVSED
TLDVILNLVKHHLPKDYFTYVSVLFAREIQIVVCEDGTNDVYRSLLGDDARSLVRIFYVPRGYTSQIKLYTETKHDTERL
HLQTIFDVFVSEGDSHVEILDEENCDEDLIQFRSVLVLTKENASVKLHHFPFGGFRSKLFLHSHLLGKGAEVTIDGVSAL
SKRNLKDLDMEMIHHADHTTSKISYKTIVTDRSHHIFTGNLIIPPNLKKVVAHQESFNLSLNKKARAEANPKLEVLAEDV
SCTHGATVGDIDEEQYFYLLSRGLSPEESKSLLVTAFYGETIQRIGFSDQIKEGLESTIHGLLVGGK

Sequences:

>Translated_387_residues
MNSSLIKNHFILNQKKRNQFCSSLLGDWEVLALPTEKDESYRKFPISSIDWNELGFDPKLKNDHYEGQTDDSANPLVSED
TLDVILNLVKHHLPKDYFTYVSVLFAREIQIVVCEDGTNDVYRSLLGDDARSLVRIFYVPRGYTSQIKLYTETKHDTERL
HLQTIFDVFVSEGDSHVEILDEENCDEDLIQFRSVLVLTKENASVKLHHFPFGGFRSKLFLHSHLLGKGAEVTIDGVSAL
SKRNLKDLDMEMIHHADHTTSKISYKTIVTDRSHHIFTGNLIIPPNLKKVVAHQESFNLSLNKKARAEANPKLEVLAEDV
SCTHGATVGDIDEEQYFYLLSRGLSPEESKSLLVTAFYGETIQRIGFSDQIKEGLESTIHGLLVGGK
>Mature_387_residues
MNSSLIKNHFILNQKKRNQFCSSLLGDWEVLALPTEKDESYRKFPISSIDWNELGFDPKLKNDHYEGQTDDSANPLVSED
TLDVILNLVKHHLPKDYFTYVSVLFAREIQIVVCEDGTNDVYRSLLGDDARSLVRIFYVPRGYTSQIKLYTETKHDTERL
HLQTIFDVFVSEGDSHVEILDEENCDEDLIQFRSVLVLTKENASVKLHHFPFGGFRSKLFLHSHLLGKGAEVTIDGVSAL
SKRNLKDLDMEMIHHADHTTSKISYKTIVTDRSHHIFTGNLIIPPNLKKVVAHQESFNLSLNKKARAEANPKLEVLAEDV
SCTHGATVGDIDEEQYFYLLSRGLSPEESKSLLVTAFYGETIQRIGFSDQIKEGLESTIHGLLVGGK

Specific function: The sufBCD complex acts synergistically with sufE to stimulate the cysteine desulfurase activity of sufS. The sufBCD complex contributes to the assembly or repair of oxygen-labile iron-sulfur clusters under oxidative stress. May facilitate iron uptake fro

COG id: COG0719

COG function: function code O; ABC-type transport system involved in Fe-S cluster assembly, permease component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0051 (ycf24) family [H]

Homologues:

Organism=Escherichia coli, GI1787971, Length=190, Percent_Identity=30, Blast_Score=96, Evalue=5e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000825
- InterPro:   IPR011542 [H]

Pfam domain/function: PF01458 UPF0051 [H]

EC number: NA

Molecular weight: Translated: 43877; Mature: 43877

Theoretical pI: Translated: 5.89; Mature: 5.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSSLIKNHFILNQKKRNQFCSSLLGDWEVLALPTEKDESYRKFPISSIDWNELGFDPKL
CCCCHHHHHHHCCCHHHHHHHHHHHCCCEEEEECCCCCCCHHCCCCCCCCHHHCCCCCCC
KNDHYEGQTDDSANPLVSEDTLDVILNLVKHHLPKDYFTYVSVLFAREIQIVVCEDGTND
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCEEEEEEECCCHH
VYRSLLGDDARSLVRIFYVPRGYTSQIKLYTETKHDTERLHLQTIFDVFVSEGDSHVEIL
HHHHHHCCCHHHEEEEEECCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEE
DEENCDEDLIQFRSVLVLTKENASVKLHHFPFGGFRSKLFLHSHLLGKGAEVTIDGVSAL
CCCCCCHHHHHHHHEEEEEECCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEHHHHHH
SKRNLKDLDMEMIHHADHTTSKISYKTIVTDRSHHIFTGNLIIPPNLKKVVAHQESFNLS
HHCCCHHHHHHHHHHCCCCCCCEEEEEEEECCCCEEEECCEEECCCHHHHHHHHHHCCEE
LNKKARAEANPKLEVLAEDVSCTHGATVGDIDEEQYFYLLSRGLSPEESKSLLVTAFYGE
ECCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEEEEHHH
TIQRIGFSDQIKEGLESTIHGLLVGGK
HHHHCCCHHHHHHHHHHHHHEEEECCC
>Mature Secondary Structure
MNSSLIKNHFILNQKKRNQFCSSLLGDWEVLALPTEKDESYRKFPISSIDWNELGFDPKL
CCCCHHHHHHHCCCHHHHHHHHHHHCCCEEEEECCCCCCCHHCCCCCCCCHHHCCCCCCC
KNDHYEGQTDDSANPLVSEDTLDVILNLVKHHLPKDYFTYVSVLFAREIQIVVCEDGTND
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCEEEEEEECCCHH
VYRSLLGDDARSLVRIFYVPRGYTSQIKLYTETKHDTERLHLQTIFDVFVSEGDSHVEIL
HHHHHHCCCHHHEEEEEECCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEE
DEENCDEDLIQFRSVLVLTKENASVKLHHFPFGGFRSKLFLHSHLLGKGAEVTIDGVSAL
CCCCCCHHHHHHHHEEEEEECCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEHHHHHH
SKRNLKDLDMEMIHHADHTTSKISYKTIVTDRSHHIFTGNLIIPPNLKKVVAHQESFNLS
HHCCCHHHHHHHHHHCCCCCCCEEEEEEEECCCCEEEECCEEECCCHHHHHHHHHHCCEE
LNKKARAEANPKLEVLAEDVSCTHGATVGDIDEEQYFYLLSRGLSPEESKSLLVTAFYGE
ECCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEEEEHHH
TIQRIGFSDQIKEGLESTIHGLLVGGK
HHHHCCCHHHHHHHHHHHHHEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 10322040 [H]