Click here to switch to the map view.

The map label for this gene is sufC [H]

Identifier: 183221303

GI number: 183221303

Start: 2008960

End: 2009712

Strand: Reverse

Name: sufC [H]

Synonym: LEPBI_I1920

Alternate gene names: 183221303

Gene position: 2009712-2008960 (Counterclockwise)

Preceding gene: 183221304

Following gene: 183221302

Centisome position: 55.83

GC content: 42.5

Gene sequence:

>753_bases
TTGTCCGCAATTCTCGAAATACAATCGCTACATGCAAATGTCGGAGACAAACAAATCCTCCGTGGGGTGAACCTGACCAT
TGGGGCGGGGGAAGTCCATGCCATCATGGGGCCGAACGGTTCAGGAAAGAGTACCTTATCCAACGTCATTTTGGGCCACC
CAAAATACACAATCACATCTGGTGATATTTTATTTCGGGGAGAATCCATTTTAAAATTATCCACAGACGAAAGGGCAAGA
CTTGGACTCTTTTTGTCTTTCCAATACCCAACAGCACTCCCAGGGGTCACCATCGGTAATTTTTTAAAATCCATTCTCAA
AGCCCACCGTGGCAAAGATGTCCCTGTGAAAGAATTCAAACAAGAGTTGAAGACTGCCATGGATCTTCTGGAAGTCCCAC
AATCGTTTATTGGCCGTTATGTGAATGATGGATTTTCTGGTGGTGAAAAAAAACGTGCCGAAATTTTACAGATGAATTTG
TTGAAGCCAGTTTTATCCATTTTGGATGAAACCGATTCTGGTCTCGACATTGACGCACTTCGCATTGTTTCCGAAGGGAT
CAATGCCAACCGAAACCCTGAACGATCAATTTTACTCATCACACATTACCAAAGGATGTTGAATTATATTGTTCCTGATT
TTGTGCATGTGTTTGCTGATGGTCGCATTTTAGAGACTGGTGGAAAAGACCTTTCCTTAAAATTAGAAGAGGTTGGTTAT
GATTGGATTTTGGAGAGAGAAGGGGTCAAATGA

Upstream 100 bases:

>100_bases
TCGGAATAGAATCTTGTTTTTTTTGACTGGTCGTTTTTCCTGGTAGAAGGGATTCGTCTATAATATAGAATCATTCTAAA
TAAAAAAACAGGATACGACC

Downstream 100 bases:

>100_bases
ATTCCTCACTCATCAAAAATCATTTTATATTAAACCAAAAAAAACGAAATCAATTTTGTTCGTCTCTTCTAGGTGATTGG
GAGGTTTTGGCTCTTCCCAC

Product: ABC transporter ATP binding protein

Products: NA

Alternate protein names: VEG296 [H]

Number of amino acids: Translated: 250; Mature: 249

Protein sequence:

>250_residues
MSAILEIQSLHANVGDKQILRGVNLTIGAGEVHAIMGPNGSGKSTLSNVILGHPKYTITSGDILFRGESILKLSTDERAR
LGLFLSFQYPTALPGVTIGNFLKSILKAHRGKDVPVKEFKQELKTAMDLLEVPQSFIGRYVNDGFSGGEKKRAEILQMNL
LKPVLSILDETDSGLDIDALRIVSEGINANRNPERSILLITHYQRMLNYIVPDFVHVFADGRILETGGKDLSLKLEEVGY
DWILEREGVK

Sequences:

>Translated_250_residues
MSAILEIQSLHANVGDKQILRGVNLTIGAGEVHAIMGPNGSGKSTLSNVILGHPKYTITSGDILFRGESILKLSTDERAR
LGLFLSFQYPTALPGVTIGNFLKSILKAHRGKDVPVKEFKQELKTAMDLLEVPQSFIGRYVNDGFSGGEKKRAEILQMNL
LKPVLSILDETDSGLDIDALRIVSEGINANRNPERSILLITHYQRMLNYIVPDFVHVFADGRILETGGKDLSLKLEEVGY
DWILEREGVK
>Mature_249_residues
SAILEIQSLHANVGDKQILRGVNLTIGAGEVHAIMGPNGSGKSTLSNVILGHPKYTITSGDILFRGESILKLSTDERARL
GLFLSFQYPTALPGVTIGNFLKSILKAHRGKDVPVKEFKQELKTAMDLLEVPQSFIGRYVNDGFSGGEKKRAEILQMNLL
KPVLSILDETDSGLDIDALRIVSEGINANRNPERSILLITHYQRMLNYIVPDFVHVFADGRILETGGKDLSLKLEEVGYD
WILEREGVK

Specific function: Unknown

COG id: COG0396

COG function: function code O; ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI46592956, Length=218, Percent_Identity=28.8990825688073, Blast_Score=68, Evalue=8e-12,
Organism=Homo sapiens, GI46592915, Length=218, Percent_Identity=28.8990825688073, Blast_Score=68, Evalue=8e-12,
Organism=Homo sapiens, GI46592898, Length=218, Percent_Identity=28.8990825688073, Blast_Score=68, Evalue=8e-12,
Organism=Homo sapiens, GI46592964, Length=218, Percent_Identity=28.8990825688073, Blast_Score=68, Evalue=9e-12,
Organism=Homo sapiens, GI46592978, Length=218, Percent_Identity=28.8990825688073, Blast_Score=68, Evalue=9e-12,
Organism=Homo sapiens, GI46592971, Length=218, Percent_Identity=28.8990825688073, Blast_Score=68, Evalue=1e-11,
Organism=Escherichia coli, GI1787972, Length=248, Percent_Identity=49.5967741935484, Blast_Score=251, Evalue=3e-68,
Organism=Escherichia coli, GI87081709, Length=226, Percent_Identity=27.8761061946903, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1786698, Length=212, Percent_Identity=29.2452830188679, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1787500, Length=217, Percent_Identity=31.3364055299539, Blast_Score=72, Evalue=2e-14,
Organism=Escherichia coli, GI1787370, Length=228, Percent_Identity=25.4385964912281, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1787759, Length=247, Percent_Identity=29.9595141700405, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI1787029, Length=234, Percent_Identity=26.9230769230769, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1786398, Length=222, Percent_Identity=30.1801801801802, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1789864, Length=237, Percent_Identity=24.8945147679325, Blast_Score=64, Evalue=6e-12,
Organism=Escherichia coli, GI1789963, Length=242, Percent_Identity=27.6859504132231, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI48994883, Length=238, Percent_Identity=28.9915966386555, Blast_Score=61, Evalue=6e-11,
Organism=Escherichia coli, GI1790467, Length=227, Percent_Identity=27.7533039647577, Blast_Score=61, Evalue=7e-11,
Organism=Escherichia coli, GI1788761, Length=231, Percent_Identity=24.2424242424242, Blast_Score=61, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI71996809, Length=242, Percent_Identity=27.6859504132231, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI193211017, Length=242, Percent_Identity=27.2727272727273, Blast_Score=74, Evalue=9e-14,
Organism=Caenorhabditis elegans, GI193211015, Length=242, Percent_Identity=27.2727272727273, Blast_Score=74, Evalue=9e-14,
Organism=Caenorhabditis elegans, GI17541710, Length=212, Percent_Identity=28.3018867924528, Blast_Score=70, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI193209708, Length=222, Percent_Identity=30.6306306306306, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI193202349, Length=228, Percent_Identity=28.5087719298246, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17543740, Length=231, Percent_Identity=28.5714285714286, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17565938, Length=224, Percent_Identity=28.125, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17567269, Length=214, Percent_Identity=29.4392523364486, Blast_Score=65, Evalue=3e-11,
Organism=Saccharomyces cerevisiae, GI6323217, Length=219, Percent_Identity=30.5936073059361, Blast_Score=71, Evalue=2e-13,
Organism=Saccharomyces cerevisiae, GI6324498, Length=167, Percent_Identity=32.9341317365269, Blast_Score=67, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24581407, Length=175, Percent_Identity=34.8571428571429, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI45552199, Length=175, Percent_Identity=34.8571428571429, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI21357907, Length=214, Percent_Identity=28.9719626168224, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI19920532, Length=216, Percent_Identity=31.4814814814815, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24580930, Length=216, Percent_Identity=31.4814814814815, Blast_Score=66, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593
- InterPro:   IPR010230 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 27582; Mature: 27451

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAILEIQSLHANVGDKQILRGVNLTIGAGEVHAIMGPNGSGKSTLSNVILGHPKYTITS
CCHHHHHHHHHCCCCHHHHHCCCCEEEECCCEEEEECCCCCCHHHHHHHHCCCCCEEEEC
GDILFRGESILKLSTDERARLGLFLSFQYPTALPGVTIGNFLKSILKAHRGKDVPVKEFK
CCEEEECCEEEEECCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHH
QELKTAMDLLEVPQSFIGRYVNDGFSGGEKKRAEILQMNLLKPVLSILDETDSGLDIDAL
HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
RIVSEGINANRNPERSILLITHYQRMLNYIVPDFVHVFADGRILETGGKDLSLKLEEVGY
HHHHHCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCEEEEHHHCCC
DWILEREGVK
EEEEECCCCC
>Mature Secondary Structure 
SAILEIQSLHANVGDKQILRGVNLTIGAGEVHAIMGPNGSGKSTLSNVILGHPKYTITS
CHHHHHHHHHCCCCHHHHHCCCCEEEECCCEEEEECCCCCCHHHHHHHHCCCCCEEEEC
GDILFRGESILKLSTDERARLGLFLSFQYPTALPGVTIGNFLKSILKAHRGKDVPVKEFK
CCEEEECCEEEEECCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHH
QELKTAMDLLEVPQSFIGRYVNDGFSGGEKKRAEILQMNLLKPVLSILDETDSGLDIDAL
HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
RIVSEGINANRNPERSILLITHYQRMLNYIVPDFVHVFADGRILETGGKDLSLKLEEVGY
HHHHHCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCEEEEHHHCCC
DWILEREGVK
EEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377; 9298659 [H]