Click here to switch to the map view.

The map label for this gene is yrbE [C]

Identifier: 183221249

GI number: 183221249

Start: 1955987

End: 1956763

Strand: Direct

Name: yrbE [C]

Synonym: LEPBI_I1865

Alternate gene names: 183221249

Gene position: 1955987-1956763 (Clockwise)

Preceding gene: 183221248

Following gene: 183221250

Centisome position: 54.34

GC content: 45.3

Gene sequence:

>777_bases
ATGATCCGTCTCTATAGAAAAACCATTGAACCACTATTGTATGCCATTGGGTATACGGTATTACTGCTCTTTCGAGCGAT
TGGCCAGTCCCACCAATTGTATTTCAAACGCCGTGAGATCTTGGAACAGATGTTCATCGCAGGTGTAGGATCTCTTTTTG
TTGTGTCCATTGTTTCTGTGTTCACGGGAATGATCCTTGGACTGAACACGGGACTTGGGCTTAGAGATTTTGGTGCCGAA
GGTCAAATTGGACTTTTACTCACCATCACCCTCACTCGTGAAATGTCTCCATTTATGACTTCTCTCATCCTAGCCGCCTC
TGTTGGGTCTGCGATGGCTGCTGAGATTGGAACCATGAAAGTTTCCGAAGAGATTGATGCCTTGGAAGTGATGTCAATCA
GTCCAATCAGGTATCTTGTGATGCCGCGTATCGTTGGGTTTTCCCTTATGGTGCCTGTGCTATGTGTTTATTCAGCTGCT
CTTGGAATTTTAGGTGGTGGCATCGTGGGACACTTCCAATTGGGAATTGATATCATTAGTTACTTCCAAGATGTGTATTA
CCGCATTTCCTCTGTCCCAGGTCTAAAGGATTTGTATGTCGGACTTCTGAAAGGGTATGTGTTTGGATTGTCCATTGCCA
CCATCTCCTGTAGCCAAGGTCTTAGAACCGAGGGCGGAGCCATTGGAGTGGGCCAAACCACAAGGAAGGCTGTAGTCACT
TCCTTTTTAATGGTCATCTTTTCGGGTTATGTGCTCACAGCCTTATTCTATAAGTAA

Upstream 100 bases:

>100_bases
CAAAATCACAAACAGGATTCCGATACGAGTTCGCCTATGGTCTTTTTGGCATTGACACAAGAGAAGAAACAAACAAATAC
AAATTCTTTTGGTGGGAAGT

Downstream 100 bases:

>100_bases
AGGAAACTATGGAACCATTTGCCATTGAAATGAAAAATGTCCACAAAGCCTTCGGCAAACGTAAGATCTTACGTGGGATG
AACATACAGGTAAAACAAGG

Product: ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 258; Mature: 258

Protein sequence:

>258_residues
MIRLYRKTIEPLLYAIGYTVLLLFRAIGQSHQLYFKRREILEQMFIAGVGSLFVVSIVSVFTGMILGLNTGLGLRDFGAE
GQIGLLLTITLTREMSPFMTSLILAASVGSAMAAEIGTMKVSEEIDALEVMSISPIRYLVMPRIVGFSLMVPVLCVYSAA
LGILGGGIVGHFQLGIDIISYFQDVYYRISSVPGLKDLYVGLLKGYVFGLSIATISCSQGLRTEGGAIGVGQTTRKAVVT
SFLMVIFSGYVLTALFYK

Sequences:

>Translated_258_residues
MIRLYRKTIEPLLYAIGYTVLLLFRAIGQSHQLYFKRREILEQMFIAGVGSLFVVSIVSVFTGMILGLNTGLGLRDFGAE
GQIGLLLTITLTREMSPFMTSLILAASVGSAMAAEIGTMKVSEEIDALEVMSISPIRYLVMPRIVGFSLMVPVLCVYSAA
LGILGGGIVGHFQLGIDIISYFQDVYYRISSVPGLKDLYVGLLKGYVFGLSIATISCSQGLRTEGGAIGVGQTTRKAVVT
SFLMVIFSGYVLTALFYK
>Mature_258_residues
MIRLYRKTIEPLLYAIGYTVLLLFRAIGQSHQLYFKRREILEQMFIAGVGSLFVVSIVSVFTGMILGLNTGLGLRDFGAE
GQIGLLLTITLTREMSPFMTSLILAASVGSAMAAEIGTMKVSEEIDALEVMSISPIRYLVMPRIVGFSLMVPVLCVYSAA
LGILGGGIVGHFQLGIDIISYFQDVYYRISSVPGLKDLYVGLLKGYVFGLSIATISCSQGLRTEGGAIGVGQTTRKAVVT
SFLMVIFSGYVLTALFYK

Specific function: Could be part of an ABC transporter complex [H]

COG id: COG0767

COG function: function code Q; ABC-type transport system involved in resistance to organic solvents, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mlaE permease family [H]

Homologues:

Organism=Escherichia coli, GI1789585, Length=245, Percent_Identity=32.2448979591837, Blast_Score=123, Evalue=1e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003453 [H]

Pfam domain/function: PF02405 DUF140 [H]

EC number: NA

Molecular weight: Translated: 27960; Mature: 27960

Theoretical pI: Translated: 9.18; Mature: 9.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRLYRKTIEPLLYAIGYTVLLLFRAIGQSHQLYFKRREILEQMFIAGVGSLFVVSIVSV
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FTGMILGLNTGLGLRDFGAEGQIGLLLTITLTREMSPFMTSLILAASVGSAMAAEIGTMK
HHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VSEEIDALEVMSISPIRYLVMPRIVGFSLMVPVLCVYSAALGILGGGIVGHFQLGIDIIS
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
YFQDVYYRISSVPGLKDLYVGLLKGYVFGLSIATISCSQGLRTEGGAIGVGQTTRKAVVT
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCEECCCCHHHHHHHH
SFLMVIFSGYVLTALFYK
HHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MIRLYRKTIEPLLYAIGYTVLLLFRAIGQSHQLYFKRREILEQMFIAGVGSLFVVSIVSV
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FTGMILGLNTGLGLRDFGAEGQIGLLLTITLTREMSPFMTSLILAASVGSAMAAEIGTMK
HHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VSEEIDALEVMSISPIRYLVMPRIVGFSLMVPVLCVYSAALGILGGGIVGHFQLGIDIIS
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
YFQDVYYRISSVPGLKDLYVGLLKGYVFGLSIATISCSQGLRTEGGAIGVGQTTRKAVVT
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCEECCCCHHHHHHHH
SFLMVIFSGYVLTALFYK
HHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]