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The map label for this gene is ydcR [C]

Identifier: 183220842

GI number: 183220842

Start: 1517259

End: 1518452

Strand: Direct

Name: ydcR [C]

Synonym: LEPBI_I1454

Alternate gene names: 183220842

Gene position: 1517259-1518452 (Clockwise)

Preceding gene: 183220835

Following gene: 183220843

Centisome position: 42.15

GC content: 40.45

Gene sequence:

>1194_bases
ATGGAATCTAATCTGACAAATCTATTTTTGGCAAAAAGAACGAAACACATTCGTTCCTCACTGATCCGTGAAATTTTAAA
AATAACGGTAAAAGATTCCGAATTCCTTTCTTTTGCAGGAGGTCTACCCAACCCAAACTTAATCGAAAGAGAACTTTTAC
AAAAGGCGACCGAAAAAACTCTTATCTCCTCGGCCGAGAGTGCCTTACAATATGGTGATTCTACAGGTGTTTCGGAACTA
AAACAACTGATCTTAGATACCTTCGTCGGCATGGAGGGATGTGATACCAACTCCATTTGTATCACCCATGGTTCCCAGCA
AGGATTGGATATCCTTGGGAAACTGTTTATGGAGGAAGATACAAATGTTCTTTTGGAAGACCCAGTGTATTTAGGAGCCC
TTCAGGCATTTTCTCCTTACCAACCCAAGTTTTTTTCCCTTGCATTGGAGGCAGATGGGCCTAGTCTTTCGAAGCTAAGA
GAAATCCTTTCCAGTCGCCGAATCCATTGTTTTTACACCAATCCCAGTTACCAAAATCCATCCACAATTACTTGGACTGT
GGAGAAACGAATCGCAGTTGCAGAGTTACTCGATGAGTATGAAGTCATCCTCTTCGAAGATGAAGCTTATCAATTCTTAG
ATTTTTCGGGAACGGTATATCCATCCATTGCTTCGTTTCGAAAGAATAAAGATCTAACATTTGTTTTGGGAAGTTTTTCC
AAAATTATTTCACCAGGGTTTCGTTTGGGGTGGGTGGTGGTTCCGAATGTTTATCTGGAGATGTTCACTCGGATCAAACA
AGGAAATGATCTCAATTCTAACCAATTTTCACAGATTGTACTGTTGAACCTTCTTTCTCGATTCGATTTCAAAGAACATT
GCAGTAAGATCCAATCCTACTACCACAAACAAAAACAACACTTGGTGGATTGTTTGGCAAGATACCTTCCCGAAGTGAGA
TTCCAAAACCCCCAAGGGGGGATGTTCCTTTGGGTGGAATACCCGAATGTCTCTGAGAAGGAAATGATGCAACATTTGAT
GGAAAAAAAAGTGGTGATGGTGCCAGGGAATGAATTCCGTTTATTGGATTCAGATTCAGCTTACTTTCGGATGAATTTTA
GTTTTTTACAAACAGTGGATATGGAGGAAGGGGTGAAACGAATTGCTTCTGTGTATCGCGACATAATTACGTAA

Upstream 100 bases:

>100_bases
CAGATGCAAGTTGTTGGTATTTTGTTTTTTCCATCTGTATACCTATAGTGAGATTCATCTGTATATGGACAGATGTCCAT
TTGATTGATAATTTATATAC

Downstream 100 bases:

>100_bases
CACTTGTGTAGTTAAATTTGTTTGACAAATACTATTCATGTGTTTACTTAATGAATATGAAGCCTGCCATTTCAAAAGCA
TTGCATCCTAAGTTTTCGGT

Product: putative aspartate aminotransferase

Products: NA

Alternate protein names: AspB-1 [H]

Number of amino acids: Translated: 397; Mature: 397

Protein sequence:

>397_residues
MESNLTNLFLAKRTKHIRSSLIREILKITVKDSEFLSFAGGLPNPNLIERELLQKATEKTLISSAESALQYGDSTGVSEL
KQLILDTFVGMEGCDTNSICITHGSQQGLDILGKLFMEEDTNVLLEDPVYLGALQAFSPYQPKFFSLALEADGPSLSKLR
EILSSRRIHCFYTNPSYQNPSTITWTVEKRIAVAELLDEYEVILFEDEAYQFLDFSGTVYPSIASFRKNKDLTFVLGSFS
KIISPGFRLGWVVVPNVYLEMFTRIKQGNDLNSNQFSQIVLLNLLSRFDFKEHCSKIQSYYHKQKQHLVDCLARYLPEVR
FQNPQGGMFLWVEYPNVSEKEMMQHLMEKKVVMVPGNEFRLLDSDSAYFRMNFSFLQTVDMEEGVKRIASVYRDIIT

Sequences:

>Translated_397_residues
MESNLTNLFLAKRTKHIRSSLIREILKITVKDSEFLSFAGGLPNPNLIERELLQKATEKTLISSAESALQYGDSTGVSEL
KQLILDTFVGMEGCDTNSICITHGSQQGLDILGKLFMEEDTNVLLEDPVYLGALQAFSPYQPKFFSLALEADGPSLSKLR
EILSSRRIHCFYTNPSYQNPSTITWTVEKRIAVAELLDEYEVILFEDEAYQFLDFSGTVYPSIASFRKNKDLTFVLGSFS
KIISPGFRLGWVVVPNVYLEMFTRIKQGNDLNSNQFSQIVLLNLLSRFDFKEHCSKIQSYYHKQKQHLVDCLARYLPEVR
FQNPQGGMFLWVEYPNVSEKEMMQHLMEKKVVMVPGNEFRLLDSDSAYFRMNFSFLQTVDMEEGVKRIASVYRDIIT
>Mature_397_residues
MESNLTNLFLAKRTKHIRSSLIREILKITVKDSEFLSFAGGLPNPNLIERELLQKATEKTLISSAESALQYGDSTGVSEL
KQLILDTFVGMEGCDTNSICITHGSQQGLDILGKLFMEEDTNVLLEDPVYLGALQAFSPYQPKFFSLALEADGPSLSKLR
EILSSRRIHCFYTNPSYQNPSTITWTVEKRIAVAELLDEYEVILFEDEAYQFLDFSGTVYPSIASFRKNKDLTFVLGSFS
KIISPGFRLGWVVVPNVYLEMFTRIKQGNDLNSNQFSQIVLLNLLSRFDFKEHCSKIQSYYHKQKQHLVDCLARYLPEVR
FQNPQGGMFLWVEYPNVSEKEMMQHLMEKKVVMVPGNEFRLLDSDSAYFRMNFSFLQTVDMEEGVKRIASVYRDIIT

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=419, Percent_Identity=27.6849642004773, Blast_Score=149, Evalue=6e-36,
Organism=Homo sapiens, GI33469970, Length=419, Percent_Identity=27.6849642004773, Blast_Score=149, Evalue=6e-36,
Organism=Escherichia coli, GI1787710, Length=374, Percent_Identity=27.5401069518717, Blast_Score=135, Evalue=4e-33,
Organism=Escherichia coli, GI1790797, Length=374, Percent_Identity=22.9946524064171, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI48994949, Length=418, Percent_Identity=23.9234449760766, Blast_Score=73, Evalue=4e-14,
Organism=Escherichia coli, GI1786816, Length=314, Percent_Identity=23.2484076433121, Blast_Score=64, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6321000, Length=249, Percent_Identity=22.4899598393574, Blast_Score=75, Evalue=2e-14,
Organism=Drosophila melanogaster, GI21356535, Length=397, Percent_Identity=25.1889168765743, Blast_Score=115, Evalue=4e-26,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF00155 Aminotran_1_2 [H]

EC number: NA

Molecular weight: Translated: 45495; Mature: 45495

Theoretical pI: Translated: 5.50; Mature: 5.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MESNLTNLFLAKRTKHIRSSLIREILKITVKDSEFLSFAGGLPNPNLIERELLQKATEKT
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHH
LISSAESALQYGDSTGVSELKQLILDTFVGMEGCDTNSICITHGSQQGLDILGKLFMEED
HHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCHHHHHHHHHCCC
TNVLLEDPVYLGALQAFSPYQPKFFSLALEADGPSLSKLREILSSRRIHCFYTNPSYQNP
CCEEEECCHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHCCCEEEEECCCCCCCC
STITWTVEKRIAVAELLDEYEVILFEDEAYQFLDFSGTVYPSIASFRKNKDLTFVLGSFS
CEEEEEHHHHHHHHHHHCCCEEEEEECCCEEEECCCCCCCHHHHHHHCCCCEEEECCCHH
KIISPGFRLGWVVVPNVYLEMFTRIKQGNDLNSNQFSQIVLLNLLSRFDFKEHCSKIQSY
HHHCCCCEEEEEEHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHH
YHKQKQHLVDCLARYLPEVRFQNPQGGMFLWVEYPNVSEKEMMQHLMEKKVVMVPGNEFR
HHHHHHHHHHHHHHHCCHHEECCCCCCEEEEEECCCCCHHHHHHHHHHCCEEEECCCCEE
LLDSDSAYFRMNFSFLQTVDMEEGVKRIASVYRDIIT
EEECCCCEEEEEHHHHHHCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MESNLTNLFLAKRTKHIRSSLIREILKITVKDSEFLSFAGGLPNPNLIERELLQKATEKT
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHH
LISSAESALQYGDSTGVSELKQLILDTFVGMEGCDTNSICITHGSQQGLDILGKLFMEED
HHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCHHHHHHHHHCCC
TNVLLEDPVYLGALQAFSPYQPKFFSLALEADGPSLSKLREILSSRRIHCFYTNPSYQNP
CCEEEECCHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHCCCEEEEECCCCCCCC
STITWTVEKRIAVAELLDEYEVILFEDEAYQFLDFSGTVYPSIASFRKNKDLTFVLGSFS
CEEEEEHHHHHHHHHHHCCCEEEEEECCCEEEECCCCCCCHHHHHHHCCCCEEEECCCHH
KIISPGFRLGWVVVPNVYLEMFTRIKQGNDLNSNQFSQIVLLNLLSRFDFKEHCSKIQSY
HHHCCCCEEEEEEHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHH
YHKQKQHLVDCLARYLPEVRFQNPQGGMFLWVEYPNVSEKEMMQHLMEKKVVMVPGNEFR
HHHHHHHHHHHHHHHCCHHEECCCCCCEEEEEECCCCCHHHHHHHHHHCCEEEECCCCEE
LLDSDSAYFRMNFSFLQTVDMEEGVKRIASVYRDIIT
EEECCCCEEEEEHHHHHHCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8899719; 11427726 [H]