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The map label for this gene is rfaC [C]

Identifier: 183220407

GI number: 183220407

Start: 1048900

End: 1049955

Strand: Reverse

Name: rfaC [C]

Synonym: LEPBI_I1003

Alternate gene names: 183220407

Gene position: 1049955-1048900 (Counterclockwise)

Preceding gene: 183220408

Following gene: 183220406

Centisome position: 29.17

GC content: 41.19

Gene sequence:

>1056_bases
ATGACAAACCTTCTCGTACTTCGGTTTTCTGCGATGGGAGATGTTGCCTTAATGACACCTGCCCTCATCGCGATTGCCGC
TAAATATTCCAATATTCAGCTAACAGTTGTTACTAGAGGAAATTTTGCTCCATTCTTTTATAATATCCCAAACCTAAATG
TATTAGGTATCAATCTTAAAAAATACAAAGGACTTTTGGGTCTTTGGCGGATGTACCGAGACATTGACAAATTAGGTCCA
TTCGGAAATGTCATCGATCTTCATGGATCTGTTCGATCTAGACTCATTGCATTTTTTTTCCGATGCAAAGGTGTTCCCTA
TGCCAAAATCATCAAAGGCCGACGAGAAAAATTAGCACAGACAAGACGTTACAATAAAAAATTAAATCAACTCCCTCATA
CTGTGGAACGTTATTTGAATGTTTTCCGTAAATCAGGTTATGACGCTCCATTACAAGGCCCATGGCTGAATGTAGATGGC
GAATCCAAAATGTTTGCCAAAGACTATTTTAAGTCGATTGGCATCGACAAAAAAGAAGGACAATGGTTTGGATTTGCACC
GTTCGCTGGCCACGAATTAAAGGAATGGAGCTTTGAAAAATGCAAACGACTCGTAGAAGTTTTGGTATCTGAATTTCCAG
ATTGTCATGTATTTTTATTTGGCGGCCGCGACGAAGCAAAAGAATTAGAAATTTTAAAAAACAACCTAACACCTGTCCAT
ATCGTCCAAGGTGGCTCATTAGGAATCCGTGGGGAGCTTGGGATCATGGACAGATTGGATGTGATGATTGGAATGGACAG
CTCCAACGTTCATATTGCAGCCCTCCTCAAAAAACCTGTGATTGGAATTTACGGAACCACTCACCCAGTCTCGGGTTTTG
GACCGTTTGCCCAAGAAGACTCTGGAGTTTTGCAAGTTGACTTACCTTGTAGGCCGTGTTCCATTTATGGGAATACAAAA
TGTTGGCGAGGGGATCATGCTTGTATGGAACTCATTGATCCTTTGGATGTGGTGAGACGAATTCGCCTCATCCAAAATGT
AAACACTCTTTGGTGA

Upstream 100 bases:

>100_bases
TTGATGATTATGCAAAAGGGATCAAACGAGTCAAAGTATACCGCCAAATGAAAATGTACAATGACCAAAATCTAAACCCT
TCTCTCTATAAGAATCAAAA

Downstream 100 bases:

>100_bases
TTTGATTTGTGATACATTTGTAATTGATATTTGGAGTCGGTGATGTTCAAACGATTTAGGCATTTTTTCTCCGCAATCCA
CATCCAAAACTTTCAAAAAA

Product: putative lipopolysaccharide core biosynthesis glycosyl transferase RfaQ

Products: NA

Alternate protein names: ADP-HeptoseLPS Heptosyltransferase II; Heptosyltransferase; Glycosyl Transferase Family Protein; ADP-Heptose LPS Heptosyltransferase; Heptosyltransferase Family Protein; ADP-HeptoseLPS Heptosyltransferase; Lipopolysaccharide Core Biosynthesis Protein Rfaq; ADP-Heptose-LPS Heptosyltransferase; Lipopolysaccharide Heptosyltransferase III; ADP-Heptose-LPS Heptosyltransferase II; LPS Heptosyltransferase II; Lipopolysaccharide Heptosyltransferase I; Lipopolysaccharide Heptosyltransferase; WalO Protein; Lipopolysaccharide Core Biosynthesis Protein; Heptosyltransferase II; Family 9 Glycosyl Transferase

Number of amino acids: Translated: 351; Mature: 350

Protein sequence:

>351_residues
MTNLLVLRFSAMGDVALMTPALIAIAAKYSNIQLTVVTRGNFAPFFYNIPNLNVLGINLKKYKGLLGLWRMYRDIDKLGP
FGNVIDLHGSVRSRLIAFFFRCKGVPYAKIIKGRREKLAQTRRYNKKLNQLPHTVERYLNVFRKSGYDAPLQGPWLNVDG
ESKMFAKDYFKSIGIDKKEGQWFGFAPFAGHELKEWSFEKCKRLVEVLVSEFPDCHVFLFGGRDEAKELEILKNNLTPVH
IVQGGSLGIRGELGIMDRLDVMIGMDSSNVHIAALLKKPVIGIYGTTHPVSGFGPFAQEDSGVLQVDLPCRPCSIYGNTK
CWRGDHACMELIDPLDVVRRIRLIQNVNTLW

Sequences:

>Translated_351_residues
MTNLLVLRFSAMGDVALMTPALIAIAAKYSNIQLTVVTRGNFAPFFYNIPNLNVLGINLKKYKGLLGLWRMYRDIDKLGP
FGNVIDLHGSVRSRLIAFFFRCKGVPYAKIIKGRREKLAQTRRYNKKLNQLPHTVERYLNVFRKSGYDAPLQGPWLNVDG
ESKMFAKDYFKSIGIDKKEGQWFGFAPFAGHELKEWSFEKCKRLVEVLVSEFPDCHVFLFGGRDEAKELEILKNNLTPVH
IVQGGSLGIRGELGIMDRLDVMIGMDSSNVHIAALLKKPVIGIYGTTHPVSGFGPFAQEDSGVLQVDLPCRPCSIYGNTK
CWRGDHACMELIDPLDVVRRIRLIQNVNTLW
>Mature_350_residues
TNLLVLRFSAMGDVALMTPALIAIAAKYSNIQLTVVTRGNFAPFFYNIPNLNVLGINLKKYKGLLGLWRMYRDIDKLGPF
GNVIDLHGSVRSRLIAFFFRCKGVPYAKIIKGRREKLAQTRRYNKKLNQLPHTVERYLNVFRKSGYDAPLQGPWLNVDGE
SKMFAKDYFKSIGIDKKEGQWFGFAPFAGHELKEWSFEKCKRLVEVLVSEFPDCHVFLFGGRDEAKELEILKNNLTPVHI
VQGGSLGIRGELGIMDRLDVMIGMDSSNVHIAALLKKPVIGIYGTTHPVSGFGPFAQEDSGVLQVDLPCRPCSIYGNTKC
WRGDHACMELIDPLDVVRRIRLIQNVNTLW

Specific function: Heptose Transfer To The Lipopolysaccharide Core. It Transfers The Innnermost Heptose To [4'-P](3-Deoxy-D-Manno- Octulosonic Acid)2-IVa. [C]

COG id: COG0859

COG function: function code M; ADP-heptose:LPS heptosyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 2.-.-.- [C]

Molecular weight: Translated: 39682; Mature: 39551

Theoretical pI: Translated: 9.84; Mature: 9.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNLLVLRFSAMGDVALMTPALIAIAAKYSNIQLTVVTRGNFAPFFYNIPNLNVLGINLK
CCCEEEEEECCCCCHHHHHHHHHHHHEECCCEEEEEEECCCCCCEEEECCCCEEEEEEHH
KYKGLLGLWRMYRDIDKLGPFGNVIDLHGSVRSRLIAFFFRCKGVPYAKIIKGRREKLAQ
HHHHHHHHHHHHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
TRRYNKKLNQLPHTVERYLNVFRKSGYDAPLQGPWLNVDGESKMFAKDYFKSIGIDKKEG
HHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCCEECCCCCCHHHHHHHHHHHCCCCCCC
QWFGFAPFAGHELKEWSFEKCKRLVEVLVSEFPDCHVFLFGGRDEAKELEILKNNLTPVH
CEEEECCCCCCCHHCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHCCCCEEE
IVQGGSLGIRGELGIMDRLDVMIGMDSSNVHIAALLKKPVIGIYGTTHPVSGFGPFAQED
EEECCCCCCCCCCCCHHHEEEEEECCCCCEEEEEEECCCCEEECCCCCCCCCCCCCCCCC
SGVLQVDLPCRPCSIYGNTKCWRGDHACMELIDPLDVVRRIRLIQNVNTLW
CCEEEEECCCCCEEECCCCCEECCCHHHHHHHCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TNLLVLRFSAMGDVALMTPALIAIAAKYSNIQLTVVTRGNFAPFFYNIPNLNVLGINLK
CCEEEEEECCCCCHHHHHHHHHHHHEECCCEEEEEEECCCCCCEEEECCCCEEEEEEHH
KYKGLLGLWRMYRDIDKLGPFGNVIDLHGSVRSRLIAFFFRCKGVPYAKIIKGRREKLAQ
HHHHHHHHHHHHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
TRRYNKKLNQLPHTVERYLNVFRKSGYDAPLQGPWLNVDGESKMFAKDYFKSIGIDKKEG
HHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCCEECCCCCCHHHHHHHHHHHCCCCCCC
QWFGFAPFAGHELKEWSFEKCKRLVEVLVSEFPDCHVFLFGGRDEAKELEILKNNLTPVH
CEEEECCCCCCCHHCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHCCCCEEE
IVQGGSLGIRGELGIMDRLDVMIGMDSSNVHIAALLKKPVIGIYGTTHPVSGFGPFAQED
EEECCCCCCCCCCCCHHHEEEEEECCCCCEEEEEEECCCCEEECCCCCCCCCCCCCCCCC
SGVLQVDLPCRPCSIYGNTKCWRGDHACMELIDPLDVVRRIRLIQNVNTLW
CCEEEEECCCCCEEECCCCCEECCCHHHHHHHCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Transferases; Glycosyltransferases [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA