| Definition | Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)' chromosome chromosome I, complete sequence. |
|---|---|
| Accession | NC_010602 |
| Length | 3,599,677 |
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The map label for this gene is atoS [C]
Identifier: 183220379
GI number: 183220379
Start: 1010178
End: 1012079
Strand: Direct
Name: atoS [C]
Synonym: LEPBI_I0975
Alternate gene names: 183220379
Gene position: 1010178-1012079 (Clockwise)
Preceding gene: 183220375
Following gene: 183220381
Centisome position: 28.06
GC content: 37.54
Gene sequence:
>1902_bases ATGCAAACGAATCTGGAAGCAAGCGGAATGATAGAATTCTTTAAGGTCTTGCCAAACCTATTTTCTGGTGGAGTTTACCT CACCGATCCGAAATCTGGCCAAATTTTATTCTCCAATGACTTTTTCAAAAACAACCTAGGTTGCAAAAAAGAAGGCAAAG ATTGTTTGGAATCCGACTTACTGACTTGGGTTTCCATAGAAGACAAAGAATCTTTCCAAGATCTAATCCTTTCCCCAAAT AAATTGAGTGATAGAGATCTGATCTCGGGTGATTTCAGGTTCCAAATGCCAAATGAAACACTTGTTCGGTGGTTTCAGTT TGAAAAGAGAAAAGTGAACATCCCTGGAATGGATTTTACCTTACACATCGTCTTTGTTCGGGATGTGACAAACGAAAAAA CAAACGAAATCAATATTGTGGAACAAATCCAATTTTTCCTAGGCCTTTTCGAAAATGCATCGGTTGGTATGGCACTTCAA GATTGGGAAGGCGGATACTTCCGCATCAACCCAAGGTTTACGGAAATCACAGGTTATAGTTTCCAAAATTTAACCGATTT GAATATCAAACGAATCAAAGGAGAACCCATATCTGAAGAAGAGATGGAATACTTTAGTTTTTTCAAAGAAGGTGCCGAGG AATCCAGGCTCACTCGTAAAGACGGAAGGAGGATCAATGTGTATCGACGCATCAGTGCATTTCGAAACTCCCAAGGGAAA CCTGATTTTTATTATGTATTTCTAGATGATGTCACTGAAAAAAAACAATTGGAATCCTATCAGTTACATTCCCAAAAAAT GGAAACCATTGGAAGCCTTGCGACCAATATTGCCCATGATCTAAACAACTATTTACAACCAATCCATGTGTTTTCTCAAC TCGGTAAGGAACAAATCACATCAGGTAAATTCAATCAAAACCAAGTATTGGATTATTTGGAAAAAATTAGAATGGGTGCA GATAACGCTCGTTCTATGATCCATAGAATCATCCATTATTCTAAATCTAAAAATGAACATTCTGTCTCTAAAATTGATAT TTCTTCTGTTGTGGAATCTACGATCCCACTTCTTGTCGCAGGATTACCAAAATATGTAGAGGCTCAGTTTGAATTTTATA AATCTCCTCTCTTTACAAAGGTAGATGCGGTACAGTTTTCCAAAATTTTGTGTGAACTCACTTCTGGAGGAATTTTGGTA TGGGATGATCGTAAACGTGGGCTTGTGCAAATCCAAACTTTGCCTTCTGACGATGTACGATTGTTAGTTTCCTTGGAATT TTCTGGTTTATCTTTGCCTAGTTTGTCTGAGTTAACGACTCTGGATTTAGTGAATTTTAGTGATGAGGACTTCCAATGGA CGGGCATCCACTTGATCAATCGGTATGTAAAAAACTGGGGGGGTGAGTTTTATTTGGACAAACCAGATCCAATGACTCTC AAAATTTTCATCTACCTTCCATTAGAAGAAGCCTTACCCGTTGCCAATTTGTATCCATCAAATCGAGAACCAAAACCCGT TGATGTTTGGTCCGAAATTTCCAAAAAGAAAATTTGGATCGTGGAAGATGATGAAGCCGCAAGTGAAGCGATCAGTTTTG TATTATCACAAAAACAAATCAAACCAAAAGTATTTTCGACGTCTACACTTGCTTTAAACCAACTTAGCGAAGAAATTCCT GATTTCGTTTTGTCTGACTATCGATTGAAAGAAATGAGTGGTCTTATATTGATTCGTAAGATCAAACAATCAAATCCAAA TTTACCTGCGGTTTTGTATACGGGGAATATGGATGGATTGGATGCAGAGGAACTTTCAAAAGAAGGGATATTGGTTCGTT CTAAACCAATATCCGTTGATGAATTGTATGAGTCGATTTTGTTATCGTTTGGTTTTCTTTGA
Upstream 100 bases:
>100_bases ACGATGAGTGCAATCTCCCATGGTCCTAAATTAAAAAAAGCAATAGGTGCTTGAAAAGAAAACGGATTGGATGGCATATT TCCCTCTTAAGGCAAGAGTT
Downstream 100 bases:
>100_bases TTTTTTGACTTCTTCAGCGCCCGTTGTTTCTTTGATGAATTGGATCATTTCTTTTTCAATGAGTGCTTTGTCGGTTTTCA CATACTTTGAAAGTAAGACG
Product: hypothetical protein
Products: NA
Alternate protein names: Blue-light-activated histidine kinase; Response regulator [H]
Number of amino acids: Translated: 633; Mature: 633
Protein sequence:
>633_residues MQTNLEASGMIEFFKVLPNLFSGGVYLTDPKSGQILFSNDFFKNNLGCKKEGKDCLESDLLTWVSIEDKESFQDLILSPN KLSDRDLISGDFRFQMPNETLVRWFQFEKRKVNIPGMDFTLHIVFVRDVTNEKTNEINIVEQIQFFLGLFENASVGMALQ DWEGGYFRINPRFTEITGYSFQNLTDLNIKRIKGEPISEEEMEYFSFFKEGAEESRLTRKDGRRINVYRRISAFRNSQGK PDFYYVFLDDVTEKKQLESYQLHSQKMETIGSLATNIAHDLNNYLQPIHVFSQLGKEQITSGKFNQNQVLDYLEKIRMGA DNARSMIHRIIHYSKSKNEHSVSKIDISSVVESTIPLLVAGLPKYVEAQFEFYKSPLFTKVDAVQFSKILCELTSGGILV WDDRKRGLVQIQTLPSDDVRLLVSLEFSGLSLPSLSELTTLDLVNFSDEDFQWTGIHLINRYVKNWGGEFYLDKPDPMTL KIFIYLPLEEALPVANLYPSNREPKPVDVWSEISKKKIWIVEDDEAASEAISFVLSQKQIKPKVFSTSTLALNQLSEEIP DFVLSDYRLKEMSGLILIRKIKQSNPNLPAVLYTGNMDGLDAEELSKEGILVRSKPISVDELYESILLSFGFL
Sequences:
>Translated_633_residues MQTNLEASGMIEFFKVLPNLFSGGVYLTDPKSGQILFSNDFFKNNLGCKKEGKDCLESDLLTWVSIEDKESFQDLILSPN KLSDRDLISGDFRFQMPNETLVRWFQFEKRKVNIPGMDFTLHIVFVRDVTNEKTNEINIVEQIQFFLGLFENASVGMALQ DWEGGYFRINPRFTEITGYSFQNLTDLNIKRIKGEPISEEEMEYFSFFKEGAEESRLTRKDGRRINVYRRISAFRNSQGK PDFYYVFLDDVTEKKQLESYQLHSQKMETIGSLATNIAHDLNNYLQPIHVFSQLGKEQITSGKFNQNQVLDYLEKIRMGA DNARSMIHRIIHYSKSKNEHSVSKIDISSVVESTIPLLVAGLPKYVEAQFEFYKSPLFTKVDAVQFSKILCELTSGGILV WDDRKRGLVQIQTLPSDDVRLLVSLEFSGLSLPSLSELTTLDLVNFSDEDFQWTGIHLINRYVKNWGGEFYLDKPDPMTL KIFIYLPLEEALPVANLYPSNREPKPVDVWSEISKKKIWIVEDDEAASEAISFVLSQKQIKPKVFSTSTLALNQLSEEIP DFVLSDYRLKEMSGLILIRKIKQSNPNLPAVLYTGNMDGLDAEELSKEGILVRSKPISVDELYESILLSFGFL >Mature_633_residues MQTNLEASGMIEFFKVLPNLFSGGVYLTDPKSGQILFSNDFFKNNLGCKKEGKDCLESDLLTWVSIEDKESFQDLILSPN KLSDRDLISGDFRFQMPNETLVRWFQFEKRKVNIPGMDFTLHIVFVRDVTNEKTNEINIVEQIQFFLGLFENASVGMALQ DWEGGYFRINPRFTEITGYSFQNLTDLNIKRIKGEPISEEEMEYFSFFKEGAEESRLTRKDGRRINVYRRISAFRNSQGK PDFYYVFLDDVTEKKQLESYQLHSQKMETIGSLATNIAHDLNNYLQPIHVFSQLGKEQITSGKFNQNQVLDYLEKIRMGA DNARSMIHRIIHYSKSKNEHSVSKIDISSVVESTIPLLVAGLPKYVEAQFEFYKSPLFTKVDAVQFSKILCELTSGGILV WDDRKRGLVQIQTLPSDDVRLLVSLEFSGLSLPSLSELTTLDLVNFSDEDFQWTGIHLINRYVKNWGGEFYLDKPDPMTL KIFIYLPLEEALPVANLYPSNREPKPVDVWSEISKKKIWIVEDDEAASEAISFVLSQKQIKPKVFSTSTLALNQLSEEIP DFVLSDYRLKEMSGLILIRKIKQSNPNLPAVLYTGNMDGLDAEELSKEGILVRSKPISVDELYESILLSFGFL
Specific function: Photosensitive kinase and response regulator that is involved in increased bacterial virulence upon exposure to light [H]
COG id: COG2204
COG function: function code T; Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains
Gene ontology:
Cell location: Integral Membrane Protein. Inner Membrane [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 response regulatory domain [H]
Homologues:
Organism=Escherichia coli, GI1788549, Length=298, Percent_Identity=24.1610738255034, Blast_Score=66, Evalue=8e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR011006 - InterPro: IPR001610 - InterPro: IPR000014 - InterPro: IPR000700 - InterPro: IPR013767 - InterPro: IPR004358 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 - InterPro: IPR001789 [H]
Pfam domain/function: PF02518 HATPase_c; PF00512 HisKA; PF00989 PAS; PF00072 Response_reg [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 72626; Mature: 72626
Theoretical pI: Translated: 4.87; Mature: 4.87
Prosite motif: PS50113 PAC ; PS50110 RESPONSE_REGULATORY
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQTNLEASGMIEFFKVLPNLFSGGVYLTDPKSGQILFSNDFFKNNLGCKKEGKDCLESDL CCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCEEEEECCCCCCCCCCCCCCHHHHHHCC LTWVSIEDKESFQDLILSPNKLSDRDLISGDFRFQMPNETLVRWFQFEKRKVNIPGMDFT EEEEEECCHHHHHHHHCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHCCEECCCCCCEE LHIVFVRDVTNEKTNEINIVEQIQFFLGLFENASVGMALQDWEGGYFRINPRFTEITGYS EEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCEEEECCEEEEECCCC FQNLTDLNIKRIKGEPISEEEMEYFSFFKEGAEESRLTRKDGRRINVYRRISAFRNSQGK CCCCCCCCEEEECCCCCCHHHHHHHHHHHHCHHHHHHHHHCCCEEEHHHHHHHHHCCCCC PDFYYVFLDDVTEKKQLESYQLHSQKMETIGSLATNIAHDLNNYLQPIHVFSQLGKEQIT CCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHC SGKFNQNQVLDYLEKIRMGADNARSMIHRIIHYSKSKNEHSVSKIDISSVVESTIPLLVA CCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHEEHHHHHHHHHHHHHH GLPKYVEAQFEFYKSPLFTKVDAVQFSKILCELTSGGILVWDDRKRGLVQIQTLPSDDVR CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEECCCCCEE LLVSLEFSGLSLPSLSELTTLDLVNFSDEDFQWTGIHLINRYVKNWGGEFYLDKPDPMTL EEEEEEECCCCCCCCHHHHEEEEECCCCCCCEEHHHHHHHHHHHHCCCEEEECCCCCEEE KIFIYLPLEEALPVANLYPSNREPKPVDVWSEISKKKIWIVEDDEAASEAISFVLSQKQI EEEEEEEHHHHCCCCCCCCCCCCCCCCCHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHC KPKVFSTSTLALNQLSEEIPDFVLSDYRLKEMSGLILIRKIKQSNPNLPAVLYTGNMDGL CCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHCCEEEEEEHHCCCCCCCEEEEECCCCCC DAEELSKEGILVRSKPISVDELYESILLSFGFL CHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCC >Mature Secondary Structure MQTNLEASGMIEFFKVLPNLFSGGVYLTDPKSGQILFSNDFFKNNLGCKKEGKDCLESDL CCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCEEEEECCCCCCCCCCCCCCHHHHHHCC LTWVSIEDKESFQDLILSPNKLSDRDLISGDFRFQMPNETLVRWFQFEKRKVNIPGMDFT EEEEEECCHHHHHHHHCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHCCEECCCCCCEE LHIVFVRDVTNEKTNEINIVEQIQFFLGLFENASVGMALQDWEGGYFRINPRFTEITGYS EEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCEEEECCEEEEECCCC FQNLTDLNIKRIKGEPISEEEMEYFSFFKEGAEESRLTRKDGRRINVYRRISAFRNSQGK CCCCCCCCEEEECCCCCCHHHHHHHHHHHHCHHHHHHHHHCCCEEEHHHHHHHHHCCCCC PDFYYVFLDDVTEKKQLESYQLHSQKMETIGSLATNIAHDLNNYLQPIHVFSQLGKEQIT CCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHC SGKFNQNQVLDYLEKIRMGADNARSMIHRIIHYSKSKNEHSVSKIDISSVVESTIPLLVA CCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHEEHHHHHHHHHHHHHH GLPKYVEAQFEFYKSPLFTKVDAVQFSKILCELTSGGILVWDDRKRGLVQIQTLPSDDVR CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEECCCCCEE LLVSLEFSGLSLPSLSELTTLDLVNFSDEDFQWTGIHLINRYVKNWGGEFYLDKPDPMTL EEEEEEECCCCCCCCHHHHEEEEECCCCCCCEEHHHHHHHHHHHHCCCEEEECCCCCEEE KIFIYLPLEEALPVANLYPSNREPKPVDVWSEISKKKIWIVEDDEAASEAISFVLSQKQI EEEEEEEHHHHCCCCCCCCCCCCCCCCCHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHC KPKVFSTSTLALNQLSEEIPDFVLSDYRLKEMSGLILIRKIKQSNPNLPAVLYTGNMDGL CCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHCCEEEEEEHHCCCCCCCEEEEECCCCCC DAEELSKEGILVRSKPISVDELYESILLSFGFL CHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA