Definition | Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)' chromosome chromosome I, complete sequence. |
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Accession | NC_010602 |
Length | 3,599,677 |
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The map label for this gene is 183220367
Identifier: 183220367
GI number: 183220367
Start: 997090
End: 999906
Strand: Reverse
Name: 183220367
Synonym: LEPBI_I0963
Alternate gene names: NA
Gene position: 999906-997090 (Counterclockwise)
Preceding gene: 183220376
Following gene: 183220365
Centisome position: 27.78
GC content: 44.76
Gene sequence:
>2817_bases TTGCCACAATGCGATTGGCAAACATTCTTTGTTTTATCAAAACGCATTCCTATTTGGAAATTTTTTATGAACTTTAGAAA GAACACTTTGTACTTCACTATTTTGATCACACTCGTATCTCTCCTCATTTCATGTAGCGGAAGAGTCTCTGCCAGTGATA CGTTTTTATTTGGGTTGAGTGAACAGTTTGATCGTGTGTTTGGAAACCAACAAACGATCGCTTGTTCAAGTGATGTCACC ATTTCAACAAATCTTGTTTCCCTTGTGGAAGATGGGGATGTGAATTCCACATTTAGCACCGTAAGTGAGAACGGACTCAC AGATGTAGACACCGATGGCGGGACTGCTTGGGGGTATCGTTCCTTTCAAACCTGTATTTATCCAACAGTCCCTTTTAGCG GGAGTTTGGACATCCCTGTCTCTGTGACTTCCAATTATGGAGCAAGGATCACTTCACTCAAAACATTCCCTGCACCCGAT GAGGCGATACCCACCAAACTCACGTTTACTGGAAATGGTGTAGCAGCAAGGCAGTGTTTTACATTTACCGTAGCCCAAGA CGCGGACAGGAGTGCCCAAGTAAATCCAATGACAGTCGCTCTCGGAACCATGACCCAAAAAGATGGGAGTGGAGACGAAG TTTCGGGAACCTATTCTGGCAAAGATGCCTGTGATATTTCAGTCTCTGTAGAAGATGATGAAGGTCCAGGTGTGCGAGTT TCCAATATCTCTCGAGTGATGGAAGAACCAGGCCCTTCGGCAACAGCAACGAACGGTACCTTCCAAGTGGTCTTACGAAC AGCACCCACTGCCAATGTCACGATCCCCATTAACGAAGTATTTGATTCCGTCAATGCAAGCAATAGAGAAGGAACCGCAA ATCCGAAAACTCTTACCTTCACGACTGCCAACTTTAACACTCCACAAGCAGTCACCATCACCTCTGTTGATGATTTAGAA ATTGATGGGATCAAAACCTATACGGTAGAAGTTTCCAATACCAGTAGCACTGATGCTGACTACAATGGCATCAAACCAAG GAATGTGGTCGTTTACAACCGTGACCAAAGTGTTCCTGGATACGCCTATATGCGATTTGATTCAACAACGGGAACCACAG GGGCAGCGGGAGGATCTGTGATGCGGTTTGCGACCGATGAAAGTAATCAGTTTGGAACGAAATACTCAAATTTCCAACTC AAACTCAGAACCAAACCAACAAATAACGTAACACTTACGTTTTCCTCCAACTGTGGAAATAAATGTACGATCCTGACCCC AACACTTACCTTCACGACAACGGATTGGAACACCTACCAAACCTTCCAAGTGGAAGGGAAATCAGATTCAGCTAACACTG GAAATGCGGACTATACTGTTTCGTTTGTTGCCTCTTCTGCCGATGCTACGTACAATACCACTGTCGCAGAACCTACATTC AGTGTTCGCTCTTGTGATAATGATGGATCCCACCTCCTCCAACCATGTAATTTTTCTGGTTCAGCGCGAGGGATCATAGG AGATCGTTTGACAGCCGCGGAAGGTGGTTCCACCAATCTCTGGATGATTGCTCAGTCCACACCTGGATCGGATGTGACAA TTGGCCTCAATAGTACAGATACCTCAGAAGGAACCGTCCCTGCGAACGTGACAGTTTCTTCATCTAACTACAATTTTATG GAAACAGGCGGGGCAAACCAAATTGTGTTAACGCATGTGGATGATATCCTCGTGGATTTAACACAAAATTGGACGGTGAC TACATTAACATCATCTGGTGGACTCACGTATGATCCTATCGATGTGTATGCAGCTACCACCGATGATGAAAAGGCATTTT ATATTTCTCATGTGGGGAACCCAAGAGAAAACACGGCAAATACGGCGACAGTTTCCGTTTGTTTGGGTGGGAATAACCCA ACACAACCAGTCGTCCTCAACATCAGTTGCAAATCTTATACGGCGGGAACAGCTGCTTCTGGGGAGTGTGGGACCATCAC ATCTTCGCCCATCACCTTCCCTGTAAATAGCGAAGTGGAACCAGGCAATGCTTCTGATTCTGGTTGTGCAAGTTCAGCTA AAAAACAAACTTTCACGGTCACAGGACTTGATGATTCGTATGCAGACGGGAACCAATCCTTTGACATCCAATTGGTGATG GTGGCAAACACCGATACCAATTACCAAAATGCAGCAGACCCCGGAGACCATAGCATCACCAATGAAGATGATGAACCTGC GGGGAAAGCAATCTTCGTAACCACTTCTAGTTATAATGGTGAAATGACAGCACAAGGTGTGTTTGCTGCAGATGACACAT GTAACAACAACAAACCAGGAGGGGTTCCCGTTGGAACCTATAAGGCGCTTATTGTTAGCGATAGCTCTGGTGGTGTTACA AATGATAGAGTTCCCAATGGCACCAACTGGGTGTTAACTGCTCTAAGGCATTATTATCGATGTAATAGTTCTGGATACAC CAACTGTAGTGATGAACATACGAGGTTATTCATTGCAAATGGGTCTGCCGGATTTGATCCAACTAGCTTACCACGTTCAT TTTCAACCGTTGGTGACCAGTATTGGACGGGGATGACAAACACTCTGACTCCAGCTACACAAATTTCCACACCAACATGC CCGGGAGATGGATTAACATACATACACAATTGTAACGGATTTACGTATCAAAACTGCCCATCGACACCAAGCTCTTATTT ATATGGTCAAACTTGGACTATGGCGACTAACACGAGCATTTCGAGTCAGGAATCCATTTGTTCGGCGACTAAAAAATTAA TTTGTGTCCAACAATAA
Upstream 100 bases:
>100_bases ACCAAATGTAATACTACAACTAACGATGTTTGCCTAAAAAACAAACAATGATTAACTTTAGTTATAGTTTTCATCTTTCT ATGTGTGTTAGAGATTTTCA
Downstream 100 bases:
>100_bases AACGACGAATTGAAAATCAGGAAAGATCGAAGGAAAGTAAATTGATTCTTTGTCCTACATAGACTTTAAGTCTATGCAGG AATTGGTATTCGGTAACCAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 938; Mature: 937
Protein sequence:
>938_residues MPQCDWQTFFVLSKRIPIWKFFMNFRKNTLYFTILITLVSLLISCSGRVSASDTFLFGLSEQFDRVFGNQQTIACSSDVT ISTNLVSLVEDGDVNSTFSTVSENGLTDVDTDGGTAWGYRSFQTCIYPTVPFSGSLDIPVSVTSNYGARITSLKTFPAPD EAIPTKLTFTGNGVAARQCFTFTVAQDADRSAQVNPMTVALGTMTQKDGSGDEVSGTYSGKDACDISVSVEDDEGPGVRV SNISRVMEEPGPSATATNGTFQVVLRTAPTANVTIPINEVFDSVNASNREGTANPKTLTFTTANFNTPQAVTITSVDDLE IDGIKTYTVEVSNTSSTDADYNGIKPRNVVVYNRDQSVPGYAYMRFDSTTGTTGAAGGSVMRFATDESNQFGTKYSNFQL KLRTKPTNNVTLTFSSNCGNKCTILTPTLTFTTTDWNTYQTFQVEGKSDSANTGNADYTVSFVASSADATYNTTVAEPTF SVRSCDNDGSHLLQPCNFSGSARGIIGDRLTAAEGGSTNLWMIAQSTPGSDVTIGLNSTDTSEGTVPANVTVSSSNYNFM ETGGANQIVLTHVDDILVDLTQNWTVTTLTSSGGLTYDPIDVYAATTDDEKAFYISHVGNPRENTANTATVSVCLGGNNP TQPVVLNISCKSYTAGTAASGECGTITSSPITFPVNSEVEPGNASDSGCASSAKKQTFTVTGLDDSYADGNQSFDIQLVM VANTDTNYQNAADPGDHSITNEDDEPAGKAIFVTTSSYNGEMTAQGVFAADDTCNNNKPGGVPVGTYKALIVSDSSGGVT NDRVPNGTNWVLTALRHYYRCNSSGYTNCSDEHTRLFIANGSAGFDPTSLPRSFSTVGDQYWTGMTNTLTPATQISTPTC PGDGLTYIHNCNGFTYQNCPSTPSSYLYGQTWTMATNTSISSQESICSATKKLICVQQ
Sequences:
>Translated_938_residues MPQCDWQTFFVLSKRIPIWKFFMNFRKNTLYFTILITLVSLLISCSGRVSASDTFLFGLSEQFDRVFGNQQTIACSSDVT ISTNLVSLVEDGDVNSTFSTVSENGLTDVDTDGGTAWGYRSFQTCIYPTVPFSGSLDIPVSVTSNYGARITSLKTFPAPD EAIPTKLTFTGNGVAARQCFTFTVAQDADRSAQVNPMTVALGTMTQKDGSGDEVSGTYSGKDACDISVSVEDDEGPGVRV SNISRVMEEPGPSATATNGTFQVVLRTAPTANVTIPINEVFDSVNASNREGTANPKTLTFTTANFNTPQAVTITSVDDLE IDGIKTYTVEVSNTSSTDADYNGIKPRNVVVYNRDQSVPGYAYMRFDSTTGTTGAAGGSVMRFATDESNQFGTKYSNFQL KLRTKPTNNVTLTFSSNCGNKCTILTPTLTFTTTDWNTYQTFQVEGKSDSANTGNADYTVSFVASSADATYNTTVAEPTF SVRSCDNDGSHLLQPCNFSGSARGIIGDRLTAAEGGSTNLWMIAQSTPGSDVTIGLNSTDTSEGTVPANVTVSSSNYNFM ETGGANQIVLTHVDDILVDLTQNWTVTTLTSSGGLTYDPIDVYAATTDDEKAFYISHVGNPRENTANTATVSVCLGGNNP TQPVVLNISCKSYTAGTAASGECGTITSSPITFPVNSEVEPGNASDSGCASSAKKQTFTVTGLDDSYADGNQSFDIQLVM VANTDTNYQNAADPGDHSITNEDDEPAGKAIFVTTSSYNGEMTAQGVFAADDTCNNNKPGGVPVGTYKALIVSDSSGGVT NDRVPNGTNWVLTALRHYYRCNSSGYTNCSDEHTRLFIANGSAGFDPTSLPRSFSTVGDQYWTGMTNTLTPATQISTPTC PGDGLTYIHNCNGFTYQNCPSTPSSYLYGQTWTMATNTSISSQESICSATKKLICVQQ >Mature_937_residues PQCDWQTFFVLSKRIPIWKFFMNFRKNTLYFTILITLVSLLISCSGRVSASDTFLFGLSEQFDRVFGNQQTIACSSDVTI STNLVSLVEDGDVNSTFSTVSENGLTDVDTDGGTAWGYRSFQTCIYPTVPFSGSLDIPVSVTSNYGARITSLKTFPAPDE AIPTKLTFTGNGVAARQCFTFTVAQDADRSAQVNPMTVALGTMTQKDGSGDEVSGTYSGKDACDISVSVEDDEGPGVRVS NISRVMEEPGPSATATNGTFQVVLRTAPTANVTIPINEVFDSVNASNREGTANPKTLTFTTANFNTPQAVTITSVDDLEI DGIKTYTVEVSNTSSTDADYNGIKPRNVVVYNRDQSVPGYAYMRFDSTTGTTGAAGGSVMRFATDESNQFGTKYSNFQLK LRTKPTNNVTLTFSSNCGNKCTILTPTLTFTTTDWNTYQTFQVEGKSDSANTGNADYTVSFVASSADATYNTTVAEPTFS VRSCDNDGSHLLQPCNFSGSARGIIGDRLTAAEGGSTNLWMIAQSTPGSDVTIGLNSTDTSEGTVPANVTVSSSNYNFME TGGANQIVLTHVDDILVDLTQNWTVTTLTSSGGLTYDPIDVYAATTDDEKAFYISHVGNPRENTANTATVSVCLGGNNPT QPVVLNISCKSYTAGTAASGECGTITSSPITFPVNSEVEPGNASDSGCASSAKKQTFTVTGLDDSYADGNQSFDIQLVMV ANTDTNYQNAADPGDHSITNEDDEPAGKAIFVTTSSYNGEMTAQGVFAADDTCNNNKPGGVPVGTYKALIVSDSSGGVTN DRVPNGTNWVLTALRHYYRCNSSGYTNCSDEHTRLFIANGSAGFDPTSLPRSFSTVGDQYWTGMTNTLTPATQISTPTCP GDGLTYIHNCNGFTYQNCPSTPSSYLYGQTWTMATNTSISSQESICSATKKLICVQQ
Specific function: Unknown
COG id: COG2374
COG function: function code R; Predicted extracellular nuclease
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 99850; Mature: 99719
Theoretical pI: Translated: 4.19; Mature: 4.19
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPQCDWQTFFVLSKRIPIWKFFMNFRKNTLYFTILITLVSLLISCSGRVSASDTFLFGLS CCCCCCEEEEEEECCCCHHHHHHHHCCCEEEEHHHHHHHHHHHHCCCCCCCCCEEEEECH EQFDRVFGNQQTIACSSDVTISTNLVSLVEDGDVNSTFSTVSENGLTDVDTDGGTAWGYR HHHHHHHCCCEEEEECCCCEEEEEEEEEEECCCCCCHHHHHHCCCCEECCCCCCCCCCCC SFQTCIYPTVPFSGSLDIPVSVTSNYGARITSLKTFPAPDEAIPTKLTFTGNGVAARQCF CCCEEEEECCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCEEEEEECCCEEEEEEE TFTVAQDADRSAQVNPMTVALGTMTQKDGSGDEVSGTYSGKDACDISVSVEDDEGPGVRV EEEEECCCCCCCCCCEEEEEEECEECCCCCCCCCCCEECCCCEEEEEEEEECCCCCCEEH SNISRVMEEPGPSATATNGTFQVVLRTAPTANVTIPINEVFDSVNASNREGTANPKTLTF HHHHHHHHCCCCCCEECCCEEEEEEEECCCCEEEEEHHHHHHHCCCCCCCCCCCCCEEEE TTANFNTPQAVTITSVDDLEIDGIKTYTVEVSNTSSTDADYNGIKPRNVVVYNRDQSVPG EECCCCCCCEEEEEECCCEEECCEEEEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCC YAYMRFDSTTGTTGAAGGSVMRFATDESNQFGTKYSNFQLKLRTKPTNNVTLTFSSNCGN EEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCEECCEEEEEEECCCCCEEEEECCCCCC KCTILTPTLTFTTTDWNTYQTFQVEGKSDSANTGNADYTVSFVASSADATYNTTVAEPTF EEEEEEEEEEEEECCCCEEEEEEEECCCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCE SVRSCDNDGSHLLQPCNFSGSARGIIGDRLTAAEGGSTNLWMIAQSTPGSDVTIGLNSTD EEECCCCCCCHHEECCCCCCCCCEEECCCEEECCCCCCEEEEEEECCCCCEEEEEECCCC TSEGTVPANVTVSSSNYNFMETGGANQIVLTHVDDILVDLTQNWTVTTLTSSGGLTYDPI CCCCEEEEEEEEECCCCEEEECCCCCEEEEEECCEEEHEECCCEEEEEEECCCCCEECCE DVYAATTDDEKAFYISHVGNPRENTANTATVSVCLGGNNPTQPVVLNISCKSYTAGTAAS EEEEEECCCCCEEEEEECCCCCCCCCCEEEEEEEECCCCCCCCEEEEEEECCCCCCCCCC GECGTITSSPITFPVNSEVEPGNASDSGCASSAKKQTFTVTGLDDSYADGNQSFDIQLVM CCCCCEECCCEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEEE VANTDTNYQNAADPGDHSITNEDDEPAGKAIFVTTSSYNGEMTAQGVFAADDTCNNNKPG EECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEECEEEEECCCCCCCCCC GVPVGTYKALIVSDSSGGVTNDRVPNGTNWVLTALRHYYRCNSSGYTNCSDEHTRLFIAN CEECCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEC GSAGFDPTSLPRSFSTVGDQYWTGMTNTLTPATQISTPTCPGDGLTYIHNCNGFTYQNCP CCCCCCCCCCCCHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEECCCC STPSSYLYGQTWTMATNTSISSQESICSATKKLICVQQ CCCCCEEECCEEEEEECCCCCCHHHHHHHHHCEEEECC >Mature Secondary Structure PQCDWQTFFVLSKRIPIWKFFMNFRKNTLYFTILITLVSLLISCSGRVSASDTFLFGLS CCCCCEEEEEEECCCCHHHHHHHHCCCEEEEHHHHHHHHHHHHCCCCCCCCCEEEEECH EQFDRVFGNQQTIACSSDVTISTNLVSLVEDGDVNSTFSTVSENGLTDVDTDGGTAWGYR HHHHHHHCCCEEEEECCCCEEEEEEEEEEECCCCCCHHHHHHCCCCEECCCCCCCCCCCC SFQTCIYPTVPFSGSLDIPVSVTSNYGARITSLKTFPAPDEAIPTKLTFTGNGVAARQCF CCCEEEEECCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCEEEEEECCCEEEEEEE TFTVAQDADRSAQVNPMTVALGTMTQKDGSGDEVSGTYSGKDACDISVSVEDDEGPGVRV EEEEECCCCCCCCCCEEEEEEECEECCCCCCCCCCCEECCCCEEEEEEEEECCCCCCEEH SNISRVMEEPGPSATATNGTFQVVLRTAPTANVTIPINEVFDSVNASNREGTANPKTLTF HHHHHHHHCCCCCCEECCCEEEEEEEECCCCEEEEEHHHHHHHCCCCCCCCCCCCCEEEE TTANFNTPQAVTITSVDDLEIDGIKTYTVEVSNTSSTDADYNGIKPRNVVVYNRDQSVPG EECCCCCCCEEEEEECCCEEECCEEEEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCC YAYMRFDSTTGTTGAAGGSVMRFATDESNQFGTKYSNFQLKLRTKPTNNVTLTFSSNCGN EEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCEECCEEEEEEECCCCCEEEEECCCCCC KCTILTPTLTFTTTDWNTYQTFQVEGKSDSANTGNADYTVSFVASSADATYNTTVAEPTF EEEEEEEEEEEEECCCCEEEEEEEECCCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCE SVRSCDNDGSHLLQPCNFSGSARGIIGDRLTAAEGGSTNLWMIAQSTPGSDVTIGLNSTD EEECCCCCCCHHEECCCCCCCCCEEECCCEEECCCCCCEEEEEEECCCCCEEEEEECCCC TSEGTVPANVTVSSSNYNFMETGGANQIVLTHVDDILVDLTQNWTVTTLTSSGGLTYDPI CCCCEEEEEEEEECCCCEEEECCCCCEEEEEECCEEEHEECCCEEEEEEECCCCCEECCE DVYAATTDDEKAFYISHVGNPRENTANTATVSVCLGGNNPTQPVVLNISCKSYTAGTAAS EEEEEECCCCCEEEEEECCCCCCCCCCEEEEEEEECCCCCCCCEEEEEEECCCCCCCCCC GECGTITSSPITFPVNSEVEPGNASDSGCASSAKKQTFTVTGLDDSYADGNQSFDIQLVM CCCCCEECCCEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEEE VANTDTNYQNAADPGDHSITNEDDEPAGKAIFVTTSSYNGEMTAQGVFAADDTCNNNKPG EECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEECEEEEECCCCCCCCCC GVPVGTYKALIVSDSSGGVTNDRVPNGTNWVLTALRHYYRCNSSGYTNCSDEHTRLFIAN CEECCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEC GSAGFDPTSLPRSFSTVGDQYWTGMTNTLTPATQISTPTCPGDGLTYIHNCNGFTYQNCP CCCCCCCCCCCCHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEECCCC STPSSYLYGQTWTMATNTSISSQESICSATKKLICVQQ CCCCCEEECCEEEEEECCCCCCHHHHHHHHHCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA