| Definition | Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)' chromosome chromosome I, complete sequence. |
|---|---|
| Accession | NC_010602 |
| Length | 3,599,677 |
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The map label for this gene is rafA [H]
Identifier: 183220182
GI number: 183220182
Start: 788726
End: 790612
Strand: Reverse
Name: rafA [H]
Synonym: LEPBI_I0772
Alternate gene names: 183220182
Gene position: 790612-788726 (Counterclockwise)
Preceding gene: 183220189
Following gene: 183220181
Centisome position: 21.96
GC content: 39.16
Gene sequence:
>1887_bases ATGAAAATTCAATATAGAGTTCATAATTCCGTCACCATTTCCCGTTTCCTCCCTGTGAAAGCAGGTGTTTTCCAATCTGA ATGTAAAAAGTTCGAACTTTTACTTACGACCACAAAAGACTCAAAACTAGGAACTGTCCTCAGCCCTAAATTGATCTGGA GAGAGAGCACTCGTCCCGAAGTCGGATTTTCTGTCGACCATCTGGAATTAGAGCTCACAGACCTACCCGAAGGGAATGGG TTTAGCCTCTTCCAACATGGATACCAATCCTGGTCGATCTCAAGGAAAGTGGAAAGTTCTGATACCGATAGGTCTCCTCT CTTATCTTTTTTGCACTACTCCCAAGAGAATGTTTATTCCAAGAATGAAGCGAAGGTTGGAAAATTTATCTCGGAATACC TGACCCTTCTTTATAATAAAGAATCACAAAATGGTGTTTTGTATGCACCTCTCGAAGCGGGAGAATTTGGAACGAAGTTT GAAGTAGTCTTTGGTAATGAAGGAAATGTAACTTCCGTTAAAGTTATATATGATGTCCATTGCCTTCCTGATTTGCGTCC CAATGCAAAACTAAATATTTCCAAAATCAAAGTTTTGTTTTTTAAAGGTTCCCCTGAAACTAAATTATTAAAATACTTTG AAGAACTTGGTAAAAAAGAAGGTCCCGCCAATTTACCTAAAAAAGTTCCCACTGGTTGGTGTTCTTGGTACTATTATTAT ACAAACATTGATCAAAAAACCATTTTGGACAATCTAACGAAAGTTAGAGAACTCAATTTACCTTTTGAATTTTTCCAAAT TGATGATGGGTACCAAAAAGAAATTGGAGATTGGCTCATTCCAAATGAAAAATTCCCTGGAGGGATGCGAATCCTTGCGG ATGAAATCAAACGTGTTGGACTCAAACCCGGGATATGGCTTGCCCCTTTCCTTGTCCGAAAAAAATCAGAATTCTTTCGC AAATACCCTGAGGCCATTCTCAAAGACCAAAATGGCAAACCAGTTCCCGCATTGTACAATCCTTTATGGGGAAGAGGTTA TACCTATGCTCTCGATATCACACATCCGACAGCATTAGCTTACATAGAAAAGGTATTCACAACACTTGTCAAAGAATGGG GTTACCCTTATTTGAAATTGGACTTTTTGTATGCAGGACTTTTGCCAGGGGATGTATATAACAAAACTTTATCGCCCCAA GCTCGTTACCAAAATGCATTGGAACTCATCCGAAAAATCGTTGGGAAAAATACATTCCTATTAGGATGTGGTGCTCCTAT GTTACCATCGATTGGATTTTTTGATGGAATGAGAATTTCTTGTGATGTGGCTCCATTTTGGAATCCAGAAAGAATACGAA TCTTACTTAAAGATCGAAATGCACTTTGTACCAAAAAAGCTCTCATCAATGATATCACTAGGTCTTCGATGCACAGACAT TTGTGGCTCAATGATCCGGATTGTTTACTCGTCCGCAAAAAAAAGAACAAAATGAACGAAGCACAAACGAAACTGATGGC TTCCGTCATGGCAGTGTCAGGTGGTATGTTACTGGTCTCGGATGATTTGACAAAATTAGAGATGGATCGTTTGGATCTCT TAAAAAAAGCCTTCCAATTGAATAGAGAATGCCAAGCCTACACTCCGATCCCCATTGGAATTTTTGAGAATGAATTCCCA CTCGCACTCTACAACCCAGGTGGGTATTTAGGAATTTGGAATCCAACAGAAGAAGAAAAAATTGTAAAATTCACATTACC TCCAGGTGTTAAAACCAAAGCCCCATTTTTGGATTTTTGGACTGGCACACGAGTGGATTTACATCCTGTTGACGGTGGAT TTGAAACCACTTTGCCTGCATTTGGTTCTGTTGTGGTTTCTGTTTAA
Upstream 100 bases:
>100_bases CTCCTTGTAAAACGGCTGGTTTTATAGTTGAACGTTTTTGGGTCATAATGGCTTACTATGGAAACCACCCTAACAAAATC ATCAAATAGATTTTTCCAAG
Downstream 100 bases:
>100_bases GAAAGAAAATTCATTGACGGTTTTCAAAATAAACTTAGAATTTTTGCAATTCGACGTAAGAGGTTTTTTATGCGTTCCAT AAAAGTTTTCACATTGATTT
Product: alpha-glucosidase
Products: NA
Alternate protein names: Melibiase [H]
Number of amino acids: Translated: 628; Mature: 628
Protein sequence:
>628_residues MKIQYRVHNSVTISRFLPVKAGVFQSECKKFELLLTTTKDSKLGTVLSPKLIWRESTRPEVGFSVDHLELELTDLPEGNG FSLFQHGYQSWSISRKVESSDTDRSPLLSFLHYSQENVYSKNEAKVGKFISEYLTLLYNKESQNGVLYAPLEAGEFGTKF EVVFGNEGNVTSVKVIYDVHCLPDLRPNAKLNISKIKVLFFKGSPETKLLKYFEELGKKEGPANLPKKVPTGWCSWYYYY TNIDQKTILDNLTKVRELNLPFEFFQIDDGYQKEIGDWLIPNEKFPGGMRILADEIKRVGLKPGIWLAPFLVRKKSEFFR KYPEAILKDQNGKPVPALYNPLWGRGYTYALDITHPTALAYIEKVFTTLVKEWGYPYLKLDFLYAGLLPGDVYNKTLSPQ ARYQNALELIRKIVGKNTFLLGCGAPMLPSIGFFDGMRISCDVAPFWNPERIRILLKDRNALCTKKALINDITRSSMHRH LWLNDPDCLLVRKKKNKMNEAQTKLMASVMAVSGGMLLVSDDLTKLEMDRLDLLKKAFQLNRECQAYTPIPIGIFENEFP LALYNPGGYLGIWNPTEEEKIVKFTLPPGVKTKAPFLDFWTGTRVDLHPVDGGFETTLPAFGSVVVSV
Sequences:
>Translated_628_residues MKIQYRVHNSVTISRFLPVKAGVFQSECKKFELLLTTTKDSKLGTVLSPKLIWRESTRPEVGFSVDHLELELTDLPEGNG FSLFQHGYQSWSISRKVESSDTDRSPLLSFLHYSQENVYSKNEAKVGKFISEYLTLLYNKESQNGVLYAPLEAGEFGTKF EVVFGNEGNVTSVKVIYDVHCLPDLRPNAKLNISKIKVLFFKGSPETKLLKYFEELGKKEGPANLPKKVPTGWCSWYYYY TNIDQKTILDNLTKVRELNLPFEFFQIDDGYQKEIGDWLIPNEKFPGGMRILADEIKRVGLKPGIWLAPFLVRKKSEFFR KYPEAILKDQNGKPVPALYNPLWGRGYTYALDITHPTALAYIEKVFTTLVKEWGYPYLKLDFLYAGLLPGDVYNKTLSPQ ARYQNALELIRKIVGKNTFLLGCGAPMLPSIGFFDGMRISCDVAPFWNPERIRILLKDRNALCTKKALINDITRSSMHRH LWLNDPDCLLVRKKKNKMNEAQTKLMASVMAVSGGMLLVSDDLTKLEMDRLDLLKKAFQLNRECQAYTPIPIGIFENEFP LALYNPGGYLGIWNPTEEEKIVKFTLPPGVKTKAPFLDFWTGTRVDLHPVDGGFETTLPAFGSVVVSV >Mature_628_residues MKIQYRVHNSVTISRFLPVKAGVFQSECKKFELLLTTTKDSKLGTVLSPKLIWRESTRPEVGFSVDHLELELTDLPEGNG FSLFQHGYQSWSISRKVESSDTDRSPLLSFLHYSQENVYSKNEAKVGKFISEYLTLLYNKESQNGVLYAPLEAGEFGTKF EVVFGNEGNVTSVKVIYDVHCLPDLRPNAKLNISKIKVLFFKGSPETKLLKYFEELGKKEGPANLPKKVPTGWCSWYYYY TNIDQKTILDNLTKVRELNLPFEFFQIDDGYQKEIGDWLIPNEKFPGGMRILADEIKRVGLKPGIWLAPFLVRKKSEFFR KYPEAILKDQNGKPVPALYNPLWGRGYTYALDITHPTALAYIEKVFTTLVKEWGYPYLKLDFLYAGLLPGDVYNKTLSPQ ARYQNALELIRKIVGKNTFLLGCGAPMLPSIGFFDGMRISCDVAPFWNPERIRILLKDRNALCTKKALINDITRSSMHRH LWLNDPDCLLVRKKKNKMNEAQTKLMASVMAVSGGMLLVSDDLTKLEMDRLDLLKKAFQLNRECQAYTPIPIGIFENEFP LALYNPGGYLGIWNPTEEEKIVKFTLPPGVKTKAPFLDFWTGTRVDLHPVDGGFETTLPAFGSVVVSV
Specific function: Unknown
COG id: COG3345
COG function: function code G; Alpha-galactosidase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 36 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013785 - InterPro: IPR002252 - InterPro: IPR017853 - InterPro: IPR000111 [H]
Pfam domain/function: PF02065 Melibiase [H]
EC number: =3.2.1.22 [H]
Molecular weight: Translated: 71524; Mature: 71524
Theoretical pI: Translated: 9.13; Mature: 9.13
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKIQYRVHNSVTISRFLPVKAGVFQSECKKFELLLTTTKDSKLGTVLSPKLIWRESTRPE CEEEEEECCCEEEEEECCCCCCHHHHHCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCC VGFSVDHLELELTDLPEGNGFSLFQHGYQSWSISRKVESSDTDRSPLLSFLHYSQENVYS CCCEEEEEEEEEEECCCCCCCHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCC KNEAKVGKFISEYLTLLYNKESQNGVLYAPLEAGEFGTKFEVVFGNEGNVTSVKVIYDVH CCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCEEEEEECCCCCEEEEEEEEEEE CLPDLRPNAKLNISKIKVLFFKGSPETKLLKYFEELGKKEGPANLPKKVPTGWCSWYYYY ECCCCCCCCEEEEEEEEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEE TNIDQKTILDNLTKVRELNLPFEFFQIDDGYQKEIGDWLIPNEKFPGGMRILADEIKRVG ECCCHHHHHHHHHHHHHCCCCEEEEEECCCHHHHCCCCCCCCCCCCCCHHHHHHHHHHCC LKPGIWLAPFLVRKKSEFFRKYPEAILKDQNGKPVPALYNPLWGRGYTYALDITHPTALA CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCEEEEEECCCCHHHH YIEKVFTTLVKEWGYPYLKLDFLYAGLLPGDVYNKTLSPQARYQNALELIRKIVGKNTFL HHHHHHHHHHHHHCCCEEEEEEEEECCCCCHHHCCCCCHHHHHHHHHHHHHHHHCCCEEE LGCGAPMLPSIGFFDGMRISCDVAPFWNPERIRILLKDRNALCTKKALINDITRSSMHRH EECCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCE LWLNDPDCLLVRKKKNKMNEAQTKLMASVMAVSGGMLLVSDDLTKLEMDRLDLLKKAFQL EECCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHC NRECQAYTPIPIGIFENEFPLALYNPGGYLGIWNPTEEEKIVKFTLPPGVKTKAPFLDFW CCCCCEECCEEEEEECCCCCEEEECCCCEEEECCCCCCCEEEEEECCCCCCCCCCEEECC TGTRVDLHPVDGGFETTLPAFGSVVVSV CCCEEEEEECCCCCCCCHHHHCCEEEEC >Mature Secondary Structure MKIQYRVHNSVTISRFLPVKAGVFQSECKKFELLLTTTKDSKLGTVLSPKLIWRESTRPE CEEEEEECCCEEEEEECCCCCCHHHHHCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCC VGFSVDHLELELTDLPEGNGFSLFQHGYQSWSISRKVESSDTDRSPLLSFLHYSQENVYS CCCEEEEEEEEEEECCCCCCCHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCC KNEAKVGKFISEYLTLLYNKESQNGVLYAPLEAGEFGTKFEVVFGNEGNVTSVKVIYDVH CCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCEEEEEECCCCCEEEEEEEEEEE CLPDLRPNAKLNISKIKVLFFKGSPETKLLKYFEELGKKEGPANLPKKVPTGWCSWYYYY ECCCCCCCCEEEEEEEEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEE TNIDQKTILDNLTKVRELNLPFEFFQIDDGYQKEIGDWLIPNEKFPGGMRILADEIKRVG ECCCHHHHHHHHHHHHHCCCCEEEEEECCCHHHHCCCCCCCCCCCCCCHHHHHHHHHHCC LKPGIWLAPFLVRKKSEFFRKYPEAILKDQNGKPVPALYNPLWGRGYTYALDITHPTALA CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCEEEEEECCCCHHHH YIEKVFTTLVKEWGYPYLKLDFLYAGLLPGDVYNKTLSPQARYQNALELIRKIVGKNTFL HHHHHHHHHHHHHCCCEEEEEEEEECCCCCHHHCCCCCHHHHHHHHHHHHHHHHCCCEEE LGCGAPMLPSIGFFDGMRISCDVAPFWNPERIRILLKDRNALCTKKALINDITRSSMHRH EECCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCE LWLNDPDCLLVRKKKNKMNEAQTKLMASVMAVSGGMLLVSDDLTKLEMDRLDLLKKAFQL EECCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHC NRECQAYTPIPIGIFENEFPLALYNPGGYLGIWNPTEEEKIVKFTLPPGVKTKAPFLDFW CCCCCEECCEEEEEECCCCCEEEECCCCEEEECCCCCCCEEEEEECCCCCCCCCCEEECC TGTRVDLHPVDGGFETTLPAFGSVVVSV CCCEEEEEECCCCCCCCHHHHCCEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2556373; 2180920; 786627 [H]