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The map label for this gene is xerD [C]

Identifier: 183219889

GI number: 183219889

Start: 465708

End: 466994

Strand: Reverse

Name: xerD [C]

Synonym: LEPBI_I0471

Alternate gene names: 183219889

Gene position: 466994-465708 (Counterclockwise)

Preceding gene: 183219891

Following gene: 183219888

Centisome position: 12.97

GC content: 36.29

Gene sequence:

>1287_bases
GTGGCGGGTCTAGAACCCCACCCAATTCAGGGCGGGGAGACTAGATTCGCACCTCAAACCGATCACCAAATCTCCATTCA
CCAACATTTTCCCGCGATTTCGCAAAAAATCACACCATATCCAGAACCAAAGAAGGCACAGACCACCTATCTCTATGAAT
CAATAGAGGTTAGGTGTTTTATGATCAAACTCAGATATGTTATGAATGATAAACGTTTCCATTTACAGTTTCCTTATTCG
GAATTGTATATCAAAATTGTAAAATCCATTCCCAAAGCGATGTACCATCCAGAAGATAAAACTTGGTCTTTCCCAAGTGA
TCTATCCTCCATTAAACGTGTATTAGCTGACTTTTCGCACTATGATATCAGATACTTATTGAATGAAATTCCAAAACAAT
GTGGAATATTGGAAGATTTTTTTCGAGCAGCCCGAGAGCGAAATTTTTCCTTTTGTACAACCAAAACCTATTACTCTCAC
CTTTATCGTTTGTTACTATTTACGGAAAAATTACCGATCAATATCAACTCAAGGGATCTTGAAAATTATTTAGATTTTCA
AGTGAAAGAAAAGACAGTTAAGTCAGCAACCATAAGGGGAGCAAGACAAGCATTTATATTTTATTTTAGAGATGTCAGAC
AACAAATGAAACATCTCAAATTTCCAAAAATCAAGTCTGATGTCAAGTTACCAGAGGTTCTTTCTGCGGAAGAAACACGG
GCAATTTTTAATTCCTTGCCAAACATAAAACACAAAATGTTGTTACTGATCAGTTATTCAGCTGGTTTACGAGTCAGCGA
AGTCATTCACTTAAAAACCAAAGACATAGATCTCGAGAGAAATATGATCCGAATCACACAAGGCAAAGGAAAAAAAGATC
GTTACACAATACTTGCCAATTCATTAGTCTTTGAACTCCAAGAATATTTAAAAATCAGAGAATATAATTTATTGTTGAAA
TATAGTTATAACGAAGTGAAAAACATCCCTTGGTTATTTCCCGGAGCTGGAACAAAACCTCTTCATATCAGAACAGCAGA
AACAATATTTAACCAAGCAGCCGCGAAAGCAAAAATCACAAAAAAAGTAACATTCCATAGCCTAAGGCATGCGTTCGCCA
CACATTTGTTAGAACTTGGAACTGATTTAAGAATGATTCAAACCCTTCTCGGACACTCAAGTGTCCGAACAACTCAAATT
TATACTAAGGTGGCAAGAAGCCGATTGGAAAATATCAAAAGTCCACTTGACCAAATGACAAAAACAGAACCTCAATCTAA
AACCTAA

Upstream 100 bases:

>100_bases
TTCATACTGTGCAAAAGGATGAACTTTCCAAGAAAAAAAACCTTTGAGCTCGGTTTTGGTTTGGAAGTTGGGAAATACTG
TGATAGAGGGAGCGTATTGG

Downstream 100 bases:

>100_bases
TTCATTTCCATTCGAACAAATTTTTTTCAAAACCTTCCCTAAGCACATTCACTTTCGATCCCAATATCACCATTTTCACT
ACACATCCCACTGAATTTCC

Product: putative integrase/recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 428; Mature: 427

Protein sequence:

>428_residues
MAGLEPHPIQGGETRFAPQTDHQISIHQHFPAISQKITPYPEPKKAQTTYLYESIEVRCFMIKLRYVMNDKRFHLQFPYS
ELYIKIVKSIPKAMYHPEDKTWSFPSDLSSIKRVLADFSHYDIRYLLNEIPKQCGILEDFFRAARERNFSFCTTKTYYSH
LYRLLLFTEKLPININSRDLENYLDFQVKEKTVKSATIRGARQAFIFYFRDVRQQMKHLKFPKIKSDVKLPEVLSAEETR
AIFNSLPNIKHKMLLLISYSAGLRVSEVIHLKTKDIDLERNMIRITQGKGKKDRYTILANSLVFELQEYLKIREYNLLLK
YSYNEVKNIPWLFPGAGTKPLHIRTAETIFNQAAAKAKITKKVTFHSLRHAFATHLLELGTDLRMIQTLLGHSSVRTTQI
YTKVARSRLENIKSPLDQMTKTEPQSKT

Sequences:

>Translated_428_residues
MAGLEPHPIQGGETRFAPQTDHQISIHQHFPAISQKITPYPEPKKAQTTYLYESIEVRCFMIKLRYVMNDKRFHLQFPYS
ELYIKIVKSIPKAMYHPEDKTWSFPSDLSSIKRVLADFSHYDIRYLLNEIPKQCGILEDFFRAARERNFSFCTTKTYYSH
LYRLLLFTEKLPININSRDLENYLDFQVKEKTVKSATIRGARQAFIFYFRDVRQQMKHLKFPKIKSDVKLPEVLSAEETR
AIFNSLPNIKHKMLLLISYSAGLRVSEVIHLKTKDIDLERNMIRITQGKGKKDRYTILANSLVFELQEYLKIREYNLLLK
YSYNEVKNIPWLFPGAGTKPLHIRTAETIFNQAAAKAKITKKVTFHSLRHAFATHLLELGTDLRMIQTLLGHSSVRTTQI
YTKVARSRLENIKSPLDQMTKTEPQSKT
>Mature_427_residues
AGLEPHPIQGGETRFAPQTDHQISIHQHFPAISQKITPYPEPKKAQTTYLYESIEVRCFMIKLRYVMNDKRFHLQFPYSE
LYIKIVKSIPKAMYHPEDKTWSFPSDLSSIKRVLADFSHYDIRYLLNEIPKQCGILEDFFRAARERNFSFCTTKTYYSHL
YRLLLFTEKLPININSRDLENYLDFQVKEKTVKSATIRGARQAFIFYFRDVRQQMKHLKFPKIKSDVKLPEVLSAEETRA
IFNSLPNIKHKMLLLISYSAGLRVSEVIHLKTKDIDLERNMIRITQGKGKKDRYTILANSLVFELQEYLKIREYNLLLKY
SYNEVKNIPWLFPGAGTKPLHIRTAETIFNQAAAKAKITKKVTFHSLRHAFATHLLELGTDLRMIQTLLGHSSVRTTQIY
TKVARSRLENIKSPLDQMTKTEPQSKT

Specific function: May function as an integrase [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=283, Percent_Identity=32.8621908127208, Blast_Score=108, Evalue=7e-25,
Organism=Escherichia coli, GI1790244, Length=154, Percent_Identity=35.0649350649351, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI1790767, Length=194, Percent_Identity=28.8659793814433, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 50116; Mature: 49985

Theoretical pI: Translated: 10.24; Mature: 10.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGLEPHPIQGGETRFAPQTDHQISIHQHFPAISQKITPYPEPKKAQTTYLYESIEVRCF
CCCCCCCCCCCCCCCCCCCCCCEEEHHHHCCHHHHCCCCCCCCCCCHHHHHHHHHHHEEH
MIKLRYVMNDKRFHLQFPYSELYIKIVKSIPKAMYHPEDKTWSFPSDLSSIKRVLADFSH
EEEHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCH
YDIRYLLNEIPKQCGILEDFFRAARERNFSFCTTKTYYSHLYRLLLFTEKLPININSRDL
HHHHHHHHHHHHHCCHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHCCCCCCCCHHHH
ENYLDFQVKEKTVKSATIRGARQAFIFYFRDVRQQMKHLKFPKIKSDVKLPEVLSAEETR
HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCHHHHH
AIFNSLPNIKHKMLLLISYSAGLRVSEVIHLKTKDIDLERNMIRITQGKGKKDRYTILAN
HHHHCCCCCHHEEEEEEECCCCCEEEHEEEEECCCCCCCCCEEEEECCCCCCCCEEHHHH
SLVFELQEYLKIREYNLLLKYSYNEVKNIPWLFPGAGTKPLHIRTAETIFNQAAAKAKIT
HHHHHHHHHHHHHHHEEEEEECHHHHCCCCEECCCCCCCCEEEEHHHHHHHHHHHHHHHH
KKVTFHSLRHAFATHLLELGTDLRMIQTLLGHSSVRTTQIYTKVARSRLENIKSPLDQMT
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
KTEPQSKT
CCCCCCCC
>Mature Secondary Structure 
AGLEPHPIQGGETRFAPQTDHQISIHQHFPAISQKITPYPEPKKAQTTYLYESIEVRCF
CCCCCCCCCCCCCCCCCCCCCEEEHHHHCCHHHHCCCCCCCCCCCHHHHHHHHHHHEEH
MIKLRYVMNDKRFHLQFPYSELYIKIVKSIPKAMYHPEDKTWSFPSDLSSIKRVLADFSH
EEEHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCH
YDIRYLLNEIPKQCGILEDFFRAARERNFSFCTTKTYYSHLYRLLLFTEKLPININSRDL
HHHHHHHHHHHHHCCHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHCCCCCCCCHHHH
ENYLDFQVKEKTVKSATIRGARQAFIFYFRDVRQQMKHLKFPKIKSDVKLPEVLSAEETR
HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCHHHHH
AIFNSLPNIKHKMLLLISYSAGLRVSEVIHLKTKDIDLERNMIRITQGKGKKDRYTILAN
HHHHCCCCCHHEEEEEEECCCCCEEEHEEEEECCCCCCCCCEEEEECCCCCCCCEEHHHH
SLVFELQEYLKIREYNLLLKYSYNEVKNIPWLFPGAGTKPLHIRTAETIFNQAAAKAKIT
HHHHHHHHHHHHHHHEEEEEECHHHHCCCCEECCCCCCCCEEEEHHHHHHHHHHHHHHHH
KKVTFHSLRHAFATHLLELGTDLRMIQTLLGHSSVRTTQIYTKVARSRLENIKSPLDQMT
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
KTEPQSKT
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]