| Definition | Xylella fastidiosa M23 chromosome, complete genome. |
|---|---|
| Accession | NC_010577 |
| Length | 2,535,690 |
Click here to switch to the map view.
The map label for this gene is hsdM [C]
Identifier: 182682686
GI number: 182682686
Start: 2470300
End: 2472681
Strand: Reverse
Name: hsdM [C]
Synonym: XfasM23_2177
Alternate gene names: 182682686
Gene position: 2472681-2470300 (Counterclockwise)
Preceding gene: 182682687
Following gene: 182682685
Centisome position: 97.52
GC content: 60.33
Gene sequence:
>2382_bases ATGCAGAAGACTCAACAAGACCAAAGCCAGATCAAGTGGATTTCCGACTTCATCTGGAACATCGCTGACAACCGCCTGCG CGATGTCTATGTGCGCGGCAAATACCGCGACGTGATCCTGCCTTTCACTGTGCTGCGACGGCTCGACGCCGTGCTGGAAG CCACCAAGGACGCGGTGCTGGAACGCAAAAAGTTCCTCGACGCCCACAACGTGGTCGAGCAGGATGGCGCGCTGCGCATG GCGGCGGGTCAGGCGTTCTACAACGTCTCGGAATTCACCTTGGCCAAGCTCAAGGCCAGCGCGGCAGGGCAGCGCCTGCG TGATGACTTCATTGCGTATCTGGACGGCTTCTCACGCGACGTGCAGGAGATCCTCACCAAGTTCAACTTCCGCAACCAGA TCCAGAAGCTGGTGGATTCCCATGTTCTCGGCTACCTGATCGAAGACTTCCTCGACCCTGAGGTCAATCTTGCGCCGTTG CCGGTGAAGGATGCCGACGGTCGCATCAAATTGCCCGCGCTGGATAACCACGGCATGGGCACGGTGTTCGAGGAGCTGAT CCGTCGTTTCAACGAAGACAACAACGAAGAGGCGGGCGAGCACTTCACCCCGCGCGACGTGGTGCAGCTCATGGCCAAGC TGTTGTTTCTGCCGGTGGCCGAGCGCATTGAGTCCAGCACTTATTCGCTTTACGACGGCAGTTGCGGCACCGGCGGCATG CTGACCGTGGCTGAGGAAGCGCTGCACGCGCTGGCCGAGCAGCACGGCAAGGAGGTCTCCATTCACCTGTTTGGCCAGGA GATCAGCGACGAAACCTACGCCATCTGCAAGGCCGATCTGCTTTTGAAGGGCGAAGGTGCGGAAGCTGAGAACATCGTCG GCGGCGCGGATAAATCCACCTTGTCCGCCGACCAGTTCCCTTCGCGCGCATTCGATTTCATGATCTCCAACCCGCCCTAC GGCAAGAGTTGGAAAACCGATCTAGATCGCATGGGCGGCAAGAAGGGGTTCAGTGACCGGCGCTTTATCGTCAGCCACGG CGGCGATCCCGAGTTTAAGCTCCTCACCCGTTCCAGCGACGGGCAGCTCATGTTCCAGGTGAACAAGCTGCAGAAGATGA AGCACAACACGCCGCTGGGCAGCCGCATCGCGCTGGTGCATAACGGCTCGGCGCTGTTCACCGGCGACGCGGGCCAGGGC GAGAGCAACATCCGCCGCTGGGTGCTGGAGAACGACTGGCTCGAAGCCATCATCGCCCTGCCGCTCAACATCTTCTACAA CACCGGCATTGCCACCTACATCTGGGTGCTGGCCAATAAGAAGGCGCAAGCGCGCCGTGGCAAGGTGCAGTTGATTGACG CATCACAGTGGTTCCAGCCGCTGCGCCGCAACCTCGGCAAGAAGAACTGTGAACTGGGTGCTGCCGATATTGCCCGCATC CTCGATCTCTACCTTGGCCAGACGCAGGAAGCTGCGCAGTCCAAATGGTTCGACACGCAAGACTTTGGCTATTGGAAGGT CACCATCGAGCGCCCGTTACGCCTGAAAAGCCAGCTCTCTGACGAACGCATTGAGTCACTGCGTTTTGCCACTGGCGAGG AGGCATTGCGTGCTGAGATCTACGCCACCCACGGCGAGGCGCTGTATACCGAGTTTGCCAAGTGCAAACCGGCCATTGAG GCATGGCTGAAAGGCGAGGATGAGAACGAGGATGACGACAGCGACGACAGCGACAGCGGCGACGACAACGAGGCCCCCGC CGCCCGCAAAGCTGTGCCCGTCAAGCGCCGCAAAAAGCTGCTTGATGCATCGACGTGGCAGCGCGACAAAGCACTGATGG AGGTGGCGCAACGGGCGCAGCAGGCATTGGGCCGCGCCGTGTTCGACGACCACAATGCGTTCTGCGTCGGCTTCGATGCA GTGTGCAAGGCGCAGGACGCACGCTTAAGCGCGCCAGAGAAGAAGGCCATCTACAAGGCGGTGAGCTGGCGCGATGACGC CGCACTGCCGGTCATCGCCAAGCGCAGTAAGCTCAAGGCAGGCGAATGCTTCGAGCCCGGCTTTGATGGCGCGTATCTGG AAACCGTGGGCAAGGATCGCTTCATGGTCGAGTACGAACCAGACAGCGCGCTGCGCGATACCGAGCAGGTGCCGTTGCAG GAACCAGGCGGCATTGATGCCTTTTTTGCCCGCGAAGTGCTGCCGCACGCGCCGGATGCCTGGATCGCCACGGACAAGAC TCAGATTGGCTACGAGATTTCGTTTGCTCGCTATTTCTACAAGCCCGTGCCGTTGCGGACGCTGGCGGACATCCGCGCGG ACATCCTTGCGCTGGAGCAGCAGACGGAAGGGTTGTTGCATAAGATTGTGGGGAACGTGTGA
Upstream 100 bases:
>100_bases CGCTTCTGGCAGAGTGCCAGCAACGCCTGGTGGGCGTCCTCAAAGACCATTGGAATCTCGCCGTCGCCACAGGCACGGCG GCAAGCTGAGAAACGTATCA
Downstream 100 bases:
>100_bases TGGCGGTGGCGAGCGTGTATCCGAACTACCGGCAGCCGAAGATGCGCTGGCTGCCCGCTGTGCCGGAACACTGGAACGAG CAACGCGCCAAAACTTTCTT
Product: N-6 DNA methylase
Products: NA
Alternate protein names: M.MpnORFDP [H]
Number of amino acids: Translated: 793; Mature: 793
Protein sequence:
>793_residues MQKTQQDQSQIKWISDFIWNIADNRLRDVYVRGKYRDVILPFTVLRRLDAVLEATKDAVLERKKFLDAHNVVEQDGALRM AAGQAFYNVSEFTLAKLKASAAGQRLRDDFIAYLDGFSRDVQEILTKFNFRNQIQKLVDSHVLGYLIEDFLDPEVNLAPL PVKDADGRIKLPALDNHGMGTVFEELIRRFNEDNNEEAGEHFTPRDVVQLMAKLLFLPVAERIESSTYSLYDGSCGTGGM LTVAEEALHALAEQHGKEVSIHLFGQEISDETYAICKADLLLKGEGAEAENIVGGADKSTLSADQFPSRAFDFMISNPPY GKSWKTDLDRMGGKKGFSDRRFIVSHGGDPEFKLLTRSSDGQLMFQVNKLQKMKHNTPLGSRIALVHNGSALFTGDAGQG ESNIRRWVLENDWLEAIIALPLNIFYNTGIATYIWVLANKKAQARRGKVQLIDASQWFQPLRRNLGKKNCELGAADIARI LDLYLGQTQEAAQSKWFDTQDFGYWKVTIERPLRLKSQLSDERIESLRFATGEEALRAEIYATHGEALYTEFAKCKPAIE AWLKGEDENEDDDSDDSDSGDDNEAPAARKAVPVKRRKKLLDASTWQRDKALMEVAQRAQQALGRAVFDDHNAFCVGFDA VCKAQDARLSAPEKKAIYKAVSWRDDAALPVIAKRSKLKAGECFEPGFDGAYLETVGKDRFMVEYEPDSALRDTEQVPLQ EPGGIDAFFAREVLPHAPDAWIATDKTQIGYEISFARYFYKPVPLRTLADIRADILALEQQTEGLLHKIVGNV
Sequences:
>Translated_793_residues MQKTQQDQSQIKWISDFIWNIADNRLRDVYVRGKYRDVILPFTVLRRLDAVLEATKDAVLERKKFLDAHNVVEQDGALRM AAGQAFYNVSEFTLAKLKASAAGQRLRDDFIAYLDGFSRDVQEILTKFNFRNQIQKLVDSHVLGYLIEDFLDPEVNLAPL PVKDADGRIKLPALDNHGMGTVFEELIRRFNEDNNEEAGEHFTPRDVVQLMAKLLFLPVAERIESSTYSLYDGSCGTGGM LTVAEEALHALAEQHGKEVSIHLFGQEISDETYAICKADLLLKGEGAEAENIVGGADKSTLSADQFPSRAFDFMISNPPY GKSWKTDLDRMGGKKGFSDRRFIVSHGGDPEFKLLTRSSDGQLMFQVNKLQKMKHNTPLGSRIALVHNGSALFTGDAGQG ESNIRRWVLENDWLEAIIALPLNIFYNTGIATYIWVLANKKAQARRGKVQLIDASQWFQPLRRNLGKKNCELGAADIARI LDLYLGQTQEAAQSKWFDTQDFGYWKVTIERPLRLKSQLSDERIESLRFATGEEALRAEIYATHGEALYTEFAKCKPAIE AWLKGEDENEDDDSDDSDSGDDNEAPAARKAVPVKRRKKLLDASTWQRDKALMEVAQRAQQALGRAVFDDHNAFCVGFDA VCKAQDARLSAPEKKAIYKAVSWRDDAALPVIAKRSKLKAGECFEPGFDGAYLETVGKDRFMVEYEPDSALRDTEQVPLQ EPGGIDAFFAREVLPHAPDAWIATDKTQIGYEISFARYFYKPVPLRTLADIRADILALEQQTEGLLHKIVGNV >Mature_793_residues MQKTQQDQSQIKWISDFIWNIADNRLRDVYVRGKYRDVILPFTVLRRLDAVLEATKDAVLERKKFLDAHNVVEQDGALRM AAGQAFYNVSEFTLAKLKASAAGQRLRDDFIAYLDGFSRDVQEILTKFNFRNQIQKLVDSHVLGYLIEDFLDPEVNLAPL PVKDADGRIKLPALDNHGMGTVFEELIRRFNEDNNEEAGEHFTPRDVVQLMAKLLFLPVAERIESSTYSLYDGSCGTGGM LTVAEEALHALAEQHGKEVSIHLFGQEISDETYAICKADLLLKGEGAEAENIVGGADKSTLSADQFPSRAFDFMISNPPY GKSWKTDLDRMGGKKGFSDRRFIVSHGGDPEFKLLTRSSDGQLMFQVNKLQKMKHNTPLGSRIALVHNGSALFTGDAGQG ESNIRRWVLENDWLEAIIALPLNIFYNTGIATYIWVLANKKAQARRGKVQLIDASQWFQPLRRNLGKKNCELGAADIARI LDLYLGQTQEAAQSKWFDTQDFGYWKVTIERPLRLKSQLSDERIESLRFATGEEALRAEIYATHGEALYTEFAKCKPAIE AWLKGEDENEDDDSDDSDSGDDNEAPAARKAVPVKRRKKLLDASTWQRDKALMEVAQRAQQALGRAVFDDHNAFCVGFDA VCKAQDARLSAPEKKAIYKAVSWRDDAALPVIAKRSKLKAGECFEPGFDGAYLETVGKDRFMVEYEPDSALRDTEQVPLQ EPGGIDAFFAREVLPHAPDAWIATDKTQIGYEISFARYFYKPVPLRTLADIRADILALEQQTEGLLHKIVGNV
Specific function: Methylation of specific adenine residues; required for both restriction and modification activities [H]
COG id: COG0286
COG function: function code V; Type I restriction-modification system methyltransferase subunit
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the N(4)/N(6)-methyltransferase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR022749 - InterPro: IPR003356 - InterPro: IPR002052 - InterPro: IPR002296 - InterPro: IPR004546 [H]
Pfam domain/function: PF12161 HsdM_N; PF02384 N6_Mtase [H]
EC number: =2.1.1.72 [H]
Molecular weight: Translated: 89083; Mature: 89083
Theoretical pI: Translated: 5.24; Mature: 5.24
Prosite motif: PS00092 N6_MTASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQKTQQDQSQIKWISDFIWNIADNRLRDVYVRGKYRDVILPFTVLRRLDAVLEATKDAVL CCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHH ERKKFLDAHNVVEQDGALRMAAGQAFYNVSEFTLAKLKASAAGQRLRDDFIAYLDGFSRD HHHHHHHHHHHHHCCCCEEEECCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VQEILTKFNFRNQIQKLVDSHVLGYLIEDFLDPEVNLAPLPVKDADGRIKLPALDNHGMG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCCH TVFEELIRRFNEDNNEEAGEHFTPRDVVQLMAKLLFLPVAERIESSTYSLYDGSCGTGGM HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCH LTVAEEALHALAEQHGKEVSIHLFGQEISDETYAICKADLLLKGEGAEAENIVGGADKST HHHHHHHHHHHHHHCCCEEEEEEECCHHCCCCEEEEEEEEEEECCCCCHHCCCCCCCCCC LSADQFPSRAFDFMISNPPYGKSWKTDLDRMGGKKGFSDRRFIVSHGGDPEFKLLTRSSD CCHHHCCCHHHHHEECCCCCCCCCHHHHHHCCCCCCCCCCEEEEECCCCCCEEEEEECCC GQLMFQVNKLQKMKHNTPLGSRIALVHNGSALFTGDAGQGESNIRRWVLENDWLEAIIAL CCEEEEEHHHHHHHCCCCCCCEEEEEECCCEEEECCCCCCHHHHHHHHHCHHHHHHHHHH PLNIFYNTGIATYIWVLANKKAQARRGKVQLIDASQWFQPLRRNLGKKNCELGAADIARI HHHHHHHCCHHHHHHHHCCCHHHHHCCCEEEEEHHHHHHHHHHHCCCCCCCCCHHHHHHH LDLYLGQTQEAAQSKWFDTQDFGYWKVTIERPLRLKSQLSDERIESLRFATGEEALRAEI HHHHHCCCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH YATHGEALYTEFAKCKPAIEAWLKGEDENEDDDSDDSDSGDDNEAPAARKAVPVKRRKKL HCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCHHHHHHH LDASTWQRDKALMEVAQRAQQALGRAVFDDHNAFCVGFDAVCKAQDARLSAPEKKAIYKA HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCHHHHHHHH VSWRDDAALPVIAKRSKLKAGECFEPGFDGAYLETVGKDRFMVEYEPDSALRDTEQVPLQ HCCCCCCCCCHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCEEEEECCCCHHCCCCCCCCC EPGGIDAFFAREVLPHAPDAWIATDKTQIGYEISFARYFYKPVPLRTLADIRADILALEQ CCCCCHHHHHHHHCCCCCCCCEECCCCCCCEEEEHHHHHHCCCCHHHHHHHHHHHHHHHH QTEGLLHKIVGNV HHHHHHHHHHCCC >Mature Secondary Structure MQKTQQDQSQIKWISDFIWNIADNRLRDVYVRGKYRDVILPFTVLRRLDAVLEATKDAVL CCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHH ERKKFLDAHNVVEQDGALRMAAGQAFYNVSEFTLAKLKASAAGQRLRDDFIAYLDGFSRD HHHHHHHHHHHHHCCCCEEEECCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VQEILTKFNFRNQIQKLVDSHVLGYLIEDFLDPEVNLAPLPVKDADGRIKLPALDNHGMG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCCH TVFEELIRRFNEDNNEEAGEHFTPRDVVQLMAKLLFLPVAERIESSTYSLYDGSCGTGGM HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCH LTVAEEALHALAEQHGKEVSIHLFGQEISDETYAICKADLLLKGEGAEAENIVGGADKST HHHHHHHHHHHHHHCCCEEEEEEECCHHCCCCEEEEEEEEEEECCCCCHHCCCCCCCCCC LSADQFPSRAFDFMISNPPYGKSWKTDLDRMGGKKGFSDRRFIVSHGGDPEFKLLTRSSD CCHHHCCCHHHHHEECCCCCCCCCHHHHHHCCCCCCCCCCEEEEECCCCCCEEEEEECCC GQLMFQVNKLQKMKHNTPLGSRIALVHNGSALFTGDAGQGESNIRRWVLENDWLEAIIAL CCEEEEEHHHHHHHCCCCCCCEEEEEECCCEEEECCCCCCHHHHHHHHHCHHHHHHHHHH PLNIFYNTGIATYIWVLANKKAQARRGKVQLIDASQWFQPLRRNLGKKNCELGAADIARI HHHHHHHCCHHHHHHHHCCCHHHHHCCCEEEEEHHHHHHHHHHHCCCCCCCCCHHHHHHH LDLYLGQTQEAAQSKWFDTQDFGYWKVTIERPLRLKSQLSDERIESLRFATGEEALRAEI HHHHHCCCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH YATHGEALYTEFAKCKPAIEAWLKGEDENEDDDSDDSDSGDDNEAPAARKAVPVKRRKKL HCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCHHHHHHH LDASTWQRDKALMEVAQRAQQALGRAVFDDHNAFCVGFDAVCKAQDARLSAPEKKAIYKA HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCHHHHHHHH VSWRDDAALPVIAKRSKLKAGECFEPGFDGAYLETVGKDRFMVEYEPDSALRDTEQVPLQ HCCCCCCCCCHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCEEEEECCCCHHCCCCCCCCC EPGGIDAFFAREVLPHAPDAWIATDKTQIGYEISFARYFYKPVPLRTLADIRADILALEQ CCCCCHHHHHHHHCCCCCCCCEECCCCCCCEEEEHHHHHHCCCCHHHHHHHHHHHHHHHH QTEGLLHKIVGNV HHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8948633 [H]