| Definition | Xylella fastidiosa M23 chromosome, complete genome. |
|---|---|
| Accession | NC_010577 |
| Length | 2,535,690 |
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The map label for this gene is icd [H]
Identifier: 182682669
GI number: 182682669
Start: 2439750
End: 2441981
Strand: Reverse
Name: icd [H]
Synonym: XfasM23_2159
Alternate gene names: 182682669
Gene position: 2441981-2439750 (Counterclockwise)
Preceding gene: 182682670
Following gene: 182682666
Centisome position: 96.3
GC content: 49.78
Gene sequence:
>2232_bases ATGTCCAGTACGCCCAAGCTTATTTATACACTTACAGACGAGGCGCCGTTCTTGGCAACGCAGTCGCTATTGCCAATTAT CAAGGCTTACACCAAGGTTGCTGGTATCCAGGTTGAGACACGTGATATTTCTTTGGCCGGGCGTATCTTGGCGCAGTTTC CTGATGTGTTGACCGAGACGCAAAGAGTCAGTGACGATCTGGCTGATTTGGGGCAAATGACGGCTAGTCCGGATGCCAAC ATTATTAAGTTGCCTAATATCAGTGCTTCAATGCCGCAGTTAAAGGCTGCTATCAAAGAGTTGCAGGAGCAGGGCTATTT GTTGCCGGATTATCCGGATGAACCAAAAAACAGTGCGCAAAATGATGTCAAGATGCGCTATGACAGGGTGAAGGGTAGTG CGGTCAATCCCGTACTGCGTGAAGGCAATTCTGATCGCCGTGCCCCGTTGTCAGTGAAGAATTATGTGCGTAAGTATCCG CATCGGATGGGGGCGTGGAGTACTACATCCAAGTCGCATGTCGCACATATGGAGGGCGGTGATTTTTTTGGTAGTGAACG TTCGGCTGTACTCGCTCAGGCTGGTATGTTGAAGGTCGAACTGATTGCTAAGGATGGCACGGTGACGGTACTCAAGGATA AGGTTGCAGTGAGTGCCGGTGATATTGTGGATGCTGCGGTGCTGAGTAAGCAGGCATTGGCTGTGTTTGTTGCTGCACAG ATGAATGATGCGAAGTCACAGGGGGTGCTGTTTTCGGTACACCTGAAGGCGACGATGATGAAGGTGTCCGATCCGGTGAT ATTTGGGGTGTTTGTTTCAGAGTTCTACAAAGAGGCTTTGGCCAAGCATGCTGACACGTTGAAACAGGTCGGTTTTGATC CTAACAATGGTATTGGCGATTTGTACGCACGCATTGTTGCGTTGCCGGAGGAGATCCAGGCAGTCATCAGGGCTGATGTG CAGGCTCAGTATGCCAAACGTCCTGGTTTGGCGATGGTTAATTCTGTAAAGGGGATCACTAATTTGCATGTGCCTAGTGA TGTGATTGTGGATGCGTCGATGCCGGCGATGATCCGTAGTTCTGGGCAGATGTGGAACGTTGCAGGGACGCTCCAAGACA CTAAAGCAGTGATTCCGGATCGTTGTTATGCCGGCGTGTATAAAACTGTCATTGATGATTGCAAGTTACACGGTGCTTTT GATCCAGTGACGATGGGTTCGGTGCCCAATGTCGGTTTGATGGCGCAGAAGGCTGAGGAATATGGTTCGCACGACAAAAC GTTTCAGGTACAGAGTGGGGGTGTAGTCCGTGTCAGTGATGATCGGGGTGAGGTGTTGTTCGAGCATTCGGTAGAGGTGG GTGATCTTTGGCGCATGTGCCAAACGAAGGATGCACCGATCCAGGATTGGGTCAGGTTGGCGGTGGAACGTGCCCGTCTG AGTCATGTTCCGGCAGTGTTCTGGTTGGACAGCGCCCGTGCGCATGATGTGCAGGTGATTGCAAAAGTTGAGCGTTATTT AAAAGATCACGATACCAACGGTTTGGATATACGTATTATGTCGCCGGTGGCAGCGATGGAATTTTCGCTGGCCCGTATTC GTAAAGGTCAGGACACGATTTCGGTGACCGGTAATGTGTTGCGGGATTATTTGACCGATTTATTCCCAATCATGGAATTG GGCACCAGTGCCAAGATGCTTTCCATTGTTCCGTTAATGGCGGGAGGTGGTTTGTTTGAAACTGGTGCCGGTGGTTCCGC GCCGAAGCATGTACAGCAATTTACTGAGGAGAATTACTTGCGTTGGGATTCGTTGGGTGAGTTTCTGGCGTTGGCTGCAT CGTTGGAGCATCTTGGTAACCGCTATGATCATGTTGCTGCAAAGGTGTTAGCGAAAGCGCTGGACGTGGCTAACGGTCAA ATTTTGGATAACAACAAATCTCCTGCGCGTGAAATCGGTGAGTTGGATAATCGTGGTAGCCATTTTTATCTCGCTTTGTA TTGGGCTCAGGCATTAGCTGCACAGGATGAGGATGTTGTGTTGCAGGTTAAGTTTGCATCTTTGGCTAAAGTGCTGAGTG AGCATGAGATAACCATCGTTGCTGATCTCAATGCGGTTCAGGGATCTCCAGTGGATATTGGTGGTTATTATCATCCTGAT TTGGCTAGGGTTGCTGCTGGGATGCAGCCTAGTAAGACCTTCAACGATGCGTTGAGGTTGTTCTCGAGTTGA
Upstream 100 bases:
>100_bases AGTTCTTTATGCATCGGCTCTCTAGTGATCGTTGGGTCTGGCGGTTTGCTTGGTAGCCCGCATCCGATTCCACCTTAGAT TGAGAGGTTCGTAGCACACT
Downstream 100 bases:
>100_bases TCTTTTATTGTTGCCAAGCAGTCTATAGGGCTTGGTGAGTTTTGGAAGTAAAAATGAAGGCCCGCGTCTTTAGATGCGGG CCTAAACGTGAACACCAGAA
Product: isocitrate dehydrogenase, NADP-dependent
Products: NA
Alternate protein names: IDH; Oxalosuccinate decarboxylase [H]
Number of amino acids: Translated: 743; Mature: 742
Protein sequence:
>743_residues MSSTPKLIYTLTDEAPFLATQSLLPIIKAYTKVAGIQVETRDISLAGRILAQFPDVLTETQRVSDDLADLGQMTASPDAN IIKLPNISASMPQLKAAIKELQEQGYLLPDYPDEPKNSAQNDVKMRYDRVKGSAVNPVLREGNSDRRAPLSVKNYVRKYP HRMGAWSTTSKSHVAHMEGGDFFGSERSAVLAQAGMLKVELIAKDGTVTVLKDKVAVSAGDIVDAAVLSKQALAVFVAAQ MNDAKSQGVLFSVHLKATMMKVSDPVIFGVFVSEFYKEALAKHADTLKQVGFDPNNGIGDLYARIVALPEEIQAVIRADV QAQYAKRPGLAMVNSVKGITNLHVPSDVIVDASMPAMIRSSGQMWNVAGTLQDTKAVIPDRCYAGVYKTVIDDCKLHGAF DPVTMGSVPNVGLMAQKAEEYGSHDKTFQVQSGGVVRVSDDRGEVLFEHSVEVGDLWRMCQTKDAPIQDWVRLAVERARL SHVPAVFWLDSARAHDVQVIAKVERYLKDHDTNGLDIRIMSPVAAMEFSLARIRKGQDTISVTGNVLRDYLTDLFPIMEL GTSAKMLSIVPLMAGGGLFETGAGGSAPKHVQQFTEENYLRWDSLGEFLALAASLEHLGNRYDHVAAKVLAKALDVANGQ ILDNNKSPAREIGELDNRGSHFYLALYWAQALAAQDEDVVLQVKFASLAKVLSEHEITIVADLNAVQGSPVDIGGYYHPD LARVAAGMQPSKTFNDALRLFSS
Sequences:
>Translated_743_residues MSSTPKLIYTLTDEAPFLATQSLLPIIKAYTKVAGIQVETRDISLAGRILAQFPDVLTETQRVSDDLADLGQMTASPDAN IIKLPNISASMPQLKAAIKELQEQGYLLPDYPDEPKNSAQNDVKMRYDRVKGSAVNPVLREGNSDRRAPLSVKNYVRKYP HRMGAWSTTSKSHVAHMEGGDFFGSERSAVLAQAGMLKVELIAKDGTVTVLKDKVAVSAGDIVDAAVLSKQALAVFVAAQ MNDAKSQGVLFSVHLKATMMKVSDPVIFGVFVSEFYKEALAKHADTLKQVGFDPNNGIGDLYARIVALPEEIQAVIRADV QAQYAKRPGLAMVNSVKGITNLHVPSDVIVDASMPAMIRSSGQMWNVAGTLQDTKAVIPDRCYAGVYKTVIDDCKLHGAF DPVTMGSVPNVGLMAQKAEEYGSHDKTFQVQSGGVVRVSDDRGEVLFEHSVEVGDLWRMCQTKDAPIQDWVRLAVERARL SHVPAVFWLDSARAHDVQVIAKVERYLKDHDTNGLDIRIMSPVAAMEFSLARIRKGQDTISVTGNVLRDYLTDLFPIMEL GTSAKMLSIVPLMAGGGLFETGAGGSAPKHVQQFTEENYLRWDSLGEFLALAASLEHLGNRYDHVAAKVLAKALDVANGQ ILDNNKSPAREIGELDNRGSHFYLALYWAQALAAQDEDVVLQVKFASLAKVLSEHEITIVADLNAVQGSPVDIGGYYHPD LARVAAGMQPSKTFNDALRLFSS >Mature_742_residues SSTPKLIYTLTDEAPFLATQSLLPIIKAYTKVAGIQVETRDISLAGRILAQFPDVLTETQRVSDDLADLGQMTASPDANI IKLPNISASMPQLKAAIKELQEQGYLLPDYPDEPKNSAQNDVKMRYDRVKGSAVNPVLREGNSDRRAPLSVKNYVRKYPH RMGAWSTTSKSHVAHMEGGDFFGSERSAVLAQAGMLKVELIAKDGTVTVLKDKVAVSAGDIVDAAVLSKQALAVFVAAQM NDAKSQGVLFSVHLKATMMKVSDPVIFGVFVSEFYKEALAKHADTLKQVGFDPNNGIGDLYARIVALPEEIQAVIRADVQ AQYAKRPGLAMVNSVKGITNLHVPSDVIVDASMPAMIRSSGQMWNVAGTLQDTKAVIPDRCYAGVYKTVIDDCKLHGAFD PVTMGSVPNVGLMAQKAEEYGSHDKTFQVQSGGVVRVSDDRGEVLFEHSVEVGDLWRMCQTKDAPIQDWVRLAVERARLS HVPAVFWLDSARAHDVQVIAKVERYLKDHDTNGLDIRIMSPVAAMEFSLARIRKGQDTISVTGNVLRDYLTDLFPIMELG TSAKMLSIVPLMAGGGLFETGAGGSAPKHVQQFTEENYLRWDSLGEFLALAASLEHLGNRYDHVAAKVLAKALDVANGQI LDNNKSPAREIGELDNRGSHFYLALYWAQALAAQDEDVVLQVKFASLAKVLSEHEITIVADLNAVQGSPVDIGGYYHPDL ARVAAGMQPSKTFNDALRLFSS
Specific function: Unknown
COG id: COG2838
COG function: function code C; Monomeric isocitrate dehydrogenase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the monomeric-type IDH family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001804 - InterPro: IPR004436 [H]
Pfam domain/function: PF03971 IDH [H]
EC number: =1.1.1.42 [H]
Molecular weight: Translated: 80891; Mature: 80760
Theoretical pI: Translated: 6.25; Mature: 6.25
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSTPKLIYTLTDEAPFLATQSLLPIIKAYTKVAGIQVETRDISLAGRILAQFPDVLTET CCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCEEEECCHHHHHHHHHHHHHHHHHH QRVSDDLADLGQMTASPDANIIKLPNISASMPQLKAAIKELQEQGYLLPDYPDEPKNSAQ HHHHHHHHHHHHHCCCCCCCEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC NDVKMRYDRVKGSAVNPVLREGNSDRRAPLSVKNYVRKYPHRMGAWSTTSKSHVAHMEGG HHHHHHHHHHCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEECCCC DFFGSERSAVLAQAGMLKVELIAKDGTVTVLKDKVAVSAGDIVDAAVLSKQALAVFVAAQ CCCCCCHHHHHHHCCCEEEEEEECCCEEEEEECCCEECCCCHHHHHHHHHHHHHHHHHHH MNDAKSQGVLFSVHLKATMMKVSDPVIFGVFVSEFYKEALAKHADTLKQVGFDPNNGIGD CCCCCCCCEEEEEEEHEEHHHHCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH LYARIVALPEEIQAVIRADVQAQYAKRPGLAMVNSVKGITNLHVPSDVIVDASMPAMIRS HHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCEECCCCCCEEECCCCCHHHHC SGQMWNVAGTLQDTKAVIPDRCYAGVYKTVIDDCKLHGAFDPVTMGSVPNVGLMAQKAEE CCCEEEEECCCCHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHH YGSHDKTFQVQSGGVVRVSDDRGEVLFEHSVEVGDLWRMCQTKDAPIQDWVRLAVERARL HCCCCCEEEEECCCEEEEECCCCCEEEECCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHH SHVPAVFWLDSARAHDVQVIAKVERYLKDHDTNGLDIRIMSPVAAMEFSLARIRKGQDTI HCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHCCCCEE SVTGNVLRDYLTDLFPIMELGTSAKMLSIVPLMAGGGLFETGAGGSAPKHVQQFTEENYL EHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHCCE RWDSLGEFLALAASLEHLGNRYDHVAAKVLAKALDVANGQILDNNKSPAREIGELDNRGS EHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHCCCCC HFYLALYWAQALAAQDEDVVLQVKFASLAKVLSEHEITIVADLNAVQGSPVDIGGYYHPD EEEEHHHHHHHHHCCCCCEEEEEEHHHHHHHHCCCCEEEEEECCCCCCCCEEECCEECCC LARVAAGMQPSKTFNDALRLFSS HHHHHCCCCCCHHHHHHHHHHCC >Mature Secondary Structure SSTPKLIYTLTDEAPFLATQSLLPIIKAYTKVAGIQVETRDISLAGRILAQFPDVLTET CCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCEEEECCHHHHHHHHHHHHHHHHHH QRVSDDLADLGQMTASPDANIIKLPNISASMPQLKAAIKELQEQGYLLPDYPDEPKNSAQ HHHHHHHHHHHHHCCCCCCCEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC NDVKMRYDRVKGSAVNPVLREGNSDRRAPLSVKNYVRKYPHRMGAWSTTSKSHVAHMEGG HHHHHHHHHHCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEECCCC DFFGSERSAVLAQAGMLKVELIAKDGTVTVLKDKVAVSAGDIVDAAVLSKQALAVFVAAQ CCCCCCHHHHHHHCCCEEEEEEECCCEEEEEECCCEECCCCHHHHHHHHHHHHHHHHHHH MNDAKSQGVLFSVHLKATMMKVSDPVIFGVFVSEFYKEALAKHADTLKQVGFDPNNGIGD CCCCCCCCEEEEEEEHEEHHHHCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH LYARIVALPEEIQAVIRADVQAQYAKRPGLAMVNSVKGITNLHVPSDVIVDASMPAMIRS HHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCEECCCCCCEEECCCCCHHHHC SGQMWNVAGTLQDTKAVIPDRCYAGVYKTVIDDCKLHGAFDPVTMGSVPNVGLMAQKAEE CCCEEEEECCCCHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHH YGSHDKTFQVQSGGVVRVSDDRGEVLFEHSVEVGDLWRMCQTKDAPIQDWVRLAVERARL HCCCCCEEEEECCCEEEEECCCCCEEEECCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHH SHVPAVFWLDSARAHDVQVIAKVERYLKDHDTNGLDIRIMSPVAAMEFSLARIRKGQDTI HCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHCCCCEE SVTGNVLRDYLTDLFPIMELGTSAKMLSIVPLMAGGGLFETGAGGSAPKHVQQFTEENYL EHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHCCE RWDSLGEFLALAASLEHLGNRYDHVAAKVLAKALDVANGQILDNNKSPAREIGELDNRGS EHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHCCCCC HFYLALYWAQALAAQDEDVVLQVKFASLAKVLSEHEITIVADLNAVQGSPVDIGGYYHPD EEEEHHHHHHHHHCCCCCEEEEEEHHHHHHHHCCCCEEEEEECCCCCCCCEEECCEECCC LARVAAGMQPSKTFNDALRLFSS HHHHHCCCCCCHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12005040; 4149369; 12467571 [H]