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The map label for this gene is ydiU [C]

Identifier: 182682609

GI number: 182682609

Start: 2358453

End: 2360030

Strand: Reverse

Name: ydiU [C]

Synonym: XfasM23_2097

Alternate gene names: 182682609

Gene position: 2360030-2358453 (Counterclockwise)

Preceding gene: 182682610

Following gene: 182682608

Centisome position: 93.07

GC content: 53.99

Gene sequence:

>1578_bases
ATGGCGTATCTGATTCATATGTGGCCACTGCGTTTTAACAACCGTTTTATTGATGTACTGCCTTGCGATCCAGAGGTCAG
CTTACGCTCGCGTCAGGTTTTAGAAGCTTGGTCCAGGGTGGCACCCACCCCGGTGCCCATGCCGTGTTTGCTGGCGTATT
CATCTGAAGTGGCAGCGATATTGAATTTCGATGCAGAGGAACTGGTGACTCCACGTTTCGTCGAGGTGTTTAGCGGCAAT
GCGTTATATACGGGTATGCAGCCGTATGCTGTCAATTATGGTGGACATCAGTTTGGGCAATGGGTAGGGCAGCTCGGTGA
TGGTCGTGTGATTACGTTAGGCGAATTGCTTGGTGCCGATGGCGTGTACTACGAGTTGCAGCTTAAGGGGGCTGGACCTA
CGCCGTATTCGCGTGGTGCTGATGGCCGTGCTGTATTGAGATCGTCCATCCGTGAGTTCTTGTGTAGTGAGGCGATGCAT
CATCTTGGGATACCAACCACGCGCGCGTTGAGTCTGATTGCCACAGGGGATACGGTGATACGCGACATGCTTTATGACGG
TCACCCTGCCCCTGAGCCTAGTGCGATTGTGTGCCGCGTAGCGCCCTCTTTTATACGTTTTGGCACATTTGAGTTGCCGG
CTTCGCGTGGTGATATCGATCTGCTACGTCGGCTGGTCGAGTTTACGATCATACGGGATTACCCCCATTTGCACGGTGCA
GGGGAGACGTTGTACGCGGATTGGTTTGCCGAGATTTGTACACGTACCGCGGAGCTTGTTGCCCACTGGATGCGGGTTGG
TTTTGTACATGGGGTGATGAATACCGACAACATGTCGATTCTTGGTTTGACGATCGACTACGGCCCATACGGCTGGATCG
ATAATAATGATCTGGACTGGACTCCAAATGTGACCGATGTCCAGAGTCGCCGTTATCGTTTTGGTGCTCAGCCGCAAGTG
GCGTACTGGAACCTAGGTTGTTTGGCGCGTGCTCTGGCGCCACTGTTTAGTGATGCAGCGTCATTGCAGGCAGGACTAGA
ACGGTTCCGTGCCACGTACTTAGCGGCCGAGCGCCGTGATGCTGCGGCTAAACTCGGCTTCGCGGCTTGCTTTGATGAAG
ACCTGGAGTTGTTTGATGCATTGCGTACCTGCATGCACCAAGCGGAGATGGATATGACGCTGACTTTCCTGGGATTGGCT
GATTGGGAGCCGAACATGCCGGACAGTCTGTCTCTGTGGGCTGAGGCATTTTACGATCCTGTCAAACGTGATGCGCAGGC
ACCCATGTTGCGTGATTGGTTGCAGCGCTATGCAGCGCGTCTTTCTGTGGATCCCTTGCCGGTTGCCGAACGGCATGAGC
GCATGCGTTTGGCTAATCCACGCTATGTGTTGCGCAATTATTTGACGCAGCAGGCGATCGAATGTGCTGAGCAAGGCGAT
CTCACTGAGTTACATGCACTGTTGGAGGTCATGCGCCGACCCTATGATTTTCAGCTAGGACGTGAGGCATATGCGATGCG
GCGTCCAGAGTGGGCGCGCAGCCGCATTGGTTGTTCGATGCTGTCTTGCAGTTCTTGA

Upstream 100 bases:

>100_bases
TACTACGTAGTGATAGAGGTGATTCTGAGGGTAGGTTGTGTGGAATATGCGCAACCTTCGCTAATTGGGATGCGGCAATA
TCACAAGGTATTCAGCACCA

Downstream 100 bases:

>100_bases
GTGGAGACAGTGTCAGGTGTTTGATTCACACAGTGTGTGGCTGTGTCAGGAGTGAATTCAAATCTTGCATTGGTTGTGGT
GTTCCAGAGTGCTGATGCAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 525; Mature: 524

Protein sequence:

>525_residues
MAYLIHMWPLRFNNRFIDVLPCDPEVSLRSRQVLEAWSRVAPTPVPMPCLLAYSSEVAAILNFDAEELVTPRFVEVFSGN
ALYTGMQPYAVNYGGHQFGQWVGQLGDGRVITLGELLGADGVYYELQLKGAGPTPYSRGADGRAVLRSSIREFLCSEAMH
HLGIPTTRALSLIATGDTVIRDMLYDGHPAPEPSAIVCRVAPSFIRFGTFELPASRGDIDLLRRLVEFTIIRDYPHLHGA
GETLYADWFAEICTRTAELVAHWMRVGFVHGVMNTDNMSILGLTIDYGPYGWIDNNDLDWTPNVTDVQSRRYRFGAQPQV
AYWNLGCLARALAPLFSDAASLQAGLERFRATYLAAERRDAAAKLGFAACFDEDLELFDALRTCMHQAEMDMTLTFLGLA
DWEPNMPDSLSLWAEAFYDPVKRDAQAPMLRDWLQRYAARLSVDPLPVAERHERMRLANPRYVLRNYLTQQAIECAEQGD
LTELHALLEVMRRPYDFQLGREAYAMRRPEWARSRIGCSMLSCSS

Sequences:

>Translated_525_residues
MAYLIHMWPLRFNNRFIDVLPCDPEVSLRSRQVLEAWSRVAPTPVPMPCLLAYSSEVAAILNFDAEELVTPRFVEVFSGN
ALYTGMQPYAVNYGGHQFGQWVGQLGDGRVITLGELLGADGVYYELQLKGAGPTPYSRGADGRAVLRSSIREFLCSEAMH
HLGIPTTRALSLIATGDTVIRDMLYDGHPAPEPSAIVCRVAPSFIRFGTFELPASRGDIDLLRRLVEFTIIRDYPHLHGA
GETLYADWFAEICTRTAELVAHWMRVGFVHGVMNTDNMSILGLTIDYGPYGWIDNNDLDWTPNVTDVQSRRYRFGAQPQV
AYWNLGCLARALAPLFSDAASLQAGLERFRATYLAAERRDAAAKLGFAACFDEDLELFDALRTCMHQAEMDMTLTFLGLA
DWEPNMPDSLSLWAEAFYDPVKRDAQAPMLRDWLQRYAARLSVDPLPVAERHERMRLANPRYVLRNYLTQQAIECAEQGD
LTELHALLEVMRRPYDFQLGREAYAMRRPEWARSRIGCSMLSCSS
>Mature_524_residues
AYLIHMWPLRFNNRFIDVLPCDPEVSLRSRQVLEAWSRVAPTPVPMPCLLAYSSEVAAILNFDAEELVTPRFVEVFSGNA
LYTGMQPYAVNYGGHQFGQWVGQLGDGRVITLGELLGADGVYYELQLKGAGPTPYSRGADGRAVLRSSIREFLCSEAMHH
LGIPTTRALSLIATGDTVIRDMLYDGHPAPEPSAIVCRVAPSFIRFGTFELPASRGDIDLLRRLVEFTIIRDYPHLHGAG
ETLYADWFAEICTRTAELVAHWMRVGFVHGVMNTDNMSILGLTIDYGPYGWIDNNDLDWTPNVTDVQSRRYRFGAQPQVA
YWNLGCLARALAPLFSDAASLQAGLERFRATYLAAERRDAAAKLGFAACFDEDLELFDALRTCMHQAEMDMTLTFLGLAD
WEPNMPDSLSLWAEAFYDPVKRDAQAPMLRDWLQRYAARLSVDPLPVAERHERMRLANPRYVLRNYLTQQAIECAEQGDL
TELHALLEVMRRPYDFQLGREAYAMRRPEWARSRIGCSMLSCSS

Specific function: Unknown

COG id: COG0397

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0061 (SELO) family [H]

Homologues:

Organism=Homo sapiens, GI32880229, Length=422, Percent_Identity=44.3127962085308, Blast_Score=298, Evalue=1e-80,
Organism=Escherichia coli, GI1787999, Length=511, Percent_Identity=42.4657534246575, Blast_Score=347, Evalue=9e-97,
Organism=Saccharomyces cerevisiae, GI6325034, Length=341, Percent_Identity=38.1231671554252, Blast_Score=201, Evalue=2e-52,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003846 [H]

Pfam domain/function: PF02696 UPF0061 [H]

EC number: NA

Molecular weight: Translated: 59215; Mature: 59084

Theoretical pI: Translated: 5.23; Mature: 5.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAYLIHMWPLRFNNRFIDVLPCDPEVSLRSRQVLEAWSRVAPTPVPMPCLLAYSSEVAAI
CEEEEEECCEEECCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHCCCHHHH
LNFDAEELVTPRFVEVFSGNALYTGMQPYAVNYGGHQFGQWVGQLGDGRVITLGELLGAD
CCCCHHHHCCCHHHHHHCCCEEEECCCCEEECCCCHHHHHHHHCCCCCCEEEEHHHHCCC
GVYYELQLKGAGPTPYSRGADGRAVLRSSIREFLCSEAMHHLGIPTTRALSLIATGDTVI
CEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHEEEEECCHHHH
RDMLYDGHPAPEPSAIVCRVAPSFIRFGTFELPASRGDIDLLRRLVEFTIIRDYPHLHGA
HHHHHCCCCCCCCCEEEEEECHHHHHCCCEECCCCCCCHHHHHHHHHHHHHHCCCCCCCC
GETLYADWFAEICTRTAELVAHWMRVGFVHGVMNTDNMSILGLTIDYGPYGWIDNNDLDW
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCCCCCCCC
TPNVTDVQSRRYRFGAQPQVAYWNLGCLARALAPLFSDAASLQAGLERFRATYLAAERRD
CCCCCHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAAKLGFAACFDEDLELFDALRTCMHQAEMDMTLTFLGLADWEPNMPDSLSLWAEAFYDP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEECCCCCCCHHHHHHHHHHHHH
VKRDAQAPMLRDWLQRYAARLSVDPLPVAERHERMRLANPRYVLRNYLTQQAIECAEQGD
HHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCC
LTELHALLEVMRRPYDFQLGREAYAMRRPEWARSRIGCSMLSCSS
HHHHHHHHHHHHCCCCCCCCHHHHHHCCCHHHHHHHCCHHHCCCC
>Mature Secondary Structure 
AYLIHMWPLRFNNRFIDVLPCDPEVSLRSRQVLEAWSRVAPTPVPMPCLLAYSSEVAAI
EEEEEECCEEECCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHCCCHHHH
LNFDAEELVTPRFVEVFSGNALYTGMQPYAVNYGGHQFGQWVGQLGDGRVITLGELLGAD
CCCCHHHHCCCHHHHHHCCCEEEECCCCEEECCCCHHHHHHHHCCCCCCEEEEHHHHCCC
GVYYELQLKGAGPTPYSRGADGRAVLRSSIREFLCSEAMHHLGIPTTRALSLIATGDTVI
CEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHEEEEECCHHHH
RDMLYDGHPAPEPSAIVCRVAPSFIRFGTFELPASRGDIDLLRRLVEFTIIRDYPHLHGA
HHHHHCCCCCCCCCEEEEEECHHHHHCCCEECCCCCCCHHHHHHHHHHHHHHCCCCCCCC
GETLYADWFAEICTRTAELVAHWMRVGFVHGVMNTDNMSILGLTIDYGPYGWIDNNDLDW
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCCCCCCCC
TPNVTDVQSRRYRFGAQPQVAYWNLGCLARALAPLFSDAASLQAGLERFRATYLAAERRD
CCCCCHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAAKLGFAACFDEDLELFDALRTCMHQAEMDMTLTFLGLADWEPNMPDSLSLWAEAFYDP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEECCCCCCCHHHHHHHHHHHHH
VKRDAQAPMLRDWLQRYAARLSVDPLPVAERHERMRLANPRYVLRNYLTQQAIECAEQGD
HHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCC
LTELHALLEVMRRPYDFQLGREAYAMRRPEWARSRIGCSMLSCSS
HHHHHHHHHHHHCCCCCCCCHHHHHHCCCHHHHHHHCCHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12533478 [H]