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The map label for this gene is yebA [H]

Identifier: 182682473

GI number: 182682473

Start: 2200078

End: 2201037

Strand: Reverse

Name: yebA [H]

Synonym: XfasM23_1960

Alternate gene names: 182682473

Gene position: 2201037-2200078 (Counterclockwise)

Preceding gene: 182682475

Following gene: 182682472

Centisome position: 86.8

GC content: 51.04

Gene sequence:

>960_bases
ATGGCATTAGTAAGAAGAATCAAACTTAAATCGTATGAAACCCGATTTGAGTGCTCTGTCCGTCGGTTCCGCGACTTCTC
AGAGGAACGTCCGTTCATTGTATTAGGGGCTGTATTAGGGATTGGTTTGCTCAGTGGTATTGGTACTGGTGCAGCGTTGG
GGATGGTGAGCAATGTGCGGTTGCAAGCTAAGGTTCAGCAGCAGCGGGCTGAGTTGGAACACATTCGAGGCACCTCCAAG
GCGCAGGTGAATGCGTTGGCTGCGCGTCTGGGGGAGTTACAGGCTCAGGCTAACCGCCTTAACGCGCTTGGTGCACGTTT
GACCGAAATGGGTAAGCTCGGGAACGGTGAATTCAATTTTGAGGCTCCAGTGGGTGTCGGTGGCCCTGAAACTCCAGCAA
ATGATATGCCTGTGCAGGATCTCAAGGAGAGTTTAGGGCAACTTGAGCAGCAATTCTCTAGTTCTGGTCAGCAACTGAGT
GTGCTTGCTTCGTTATTGTTTAATAATCAGCTTGAACAAAATGCGGTCCCTTCGCGGGCGCCGGTCCGCAACTCCTACAT
CACTTCCAATTTTGGTCGTCGTGTTGATCCTTTCAATGGCGCTGTCGCTGAACATAAGGGTGTAGACTTTCACGCGAGTG
TGGGTAGCTCGGTCATGGCAGTGGCCGATGGCGTGGTCAGTTATGCTGGTTACCGCAATGGCTATGGTAATGTGGTTGAT
GTTGACCATAGCAATGGTTATTTGACACGTTATGCGCATAATTCGCGTCTGACGGTCAAGGTTGGCGATTTGGTCCGAAC
TGGGCAGGAAGTTGCCAAAGCAGGCTCCTCCGGGCGCTCCACAGGAGCTCATGTGCATTTTGAATTATGGAAGGATGGGG
TGGTGATGAATCCGATCAAATTCCTGGGTAATCCTAGGGGACTACAGTGGGCTTCTACCAACATGGTTGAAAGACAGTGA

Upstream 100 bases:

>100_bases
AGGTGGAGACGTTTTTTTCATTCAGTACCGCTTCAATGGCGGTCTGAAAGGGGGAAGGGCTGTTAGCGTTGGATTTCAGA
TTAGACATGAAAAAAATCGT

Downstream 100 bases:

>100_bases
CATTAGGTTGAATTTACAGGGGTTGCCCCGAGCTACAATATAGCTTGACTACGAACAGGGTGCGGTGCGCCCTGTTTTGC
TGATGGCGTTGGGATACCCT

Product: peptidase M23

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 319; Mature: 318

Protein sequence:

>319_residues
MALVRRIKLKSYETRFECSVRRFRDFSEERPFIVLGAVLGIGLLSGIGTGAALGMVSNVRLQAKVQQQRAELEHIRGTSK
AQVNALAARLGELQAQANRLNALGARLTEMGKLGNGEFNFEAPVGVGGPETPANDMPVQDLKESLGQLEQQFSSSGQQLS
VLASLLFNNQLEQNAVPSRAPVRNSYITSNFGRRVDPFNGAVAEHKGVDFHASVGSSVMAVADGVVSYAGYRNGYGNVVD
VDHSNGYLTRYAHNSRLTVKVGDLVRTGQEVAKAGSSGRSTGAHVHFELWKDGVVMNPIKFLGNPRGLQWASTNMVERQ

Sequences:

>Translated_319_residues
MALVRRIKLKSYETRFECSVRRFRDFSEERPFIVLGAVLGIGLLSGIGTGAALGMVSNVRLQAKVQQQRAELEHIRGTSK
AQVNALAARLGELQAQANRLNALGARLTEMGKLGNGEFNFEAPVGVGGPETPANDMPVQDLKESLGQLEQQFSSSGQQLS
VLASLLFNNQLEQNAVPSRAPVRNSYITSNFGRRVDPFNGAVAEHKGVDFHASVGSSVMAVADGVVSYAGYRNGYGNVVD
VDHSNGYLTRYAHNSRLTVKVGDLVRTGQEVAKAGSSGRSTGAHVHFELWKDGVVMNPIKFLGNPRGLQWASTNMVERQ
>Mature_318_residues
ALVRRIKLKSYETRFECSVRRFRDFSEERPFIVLGAVLGIGLLSGIGTGAALGMVSNVRLQAKVQQQRAELEHIRGTSKA
QVNALAARLGELQAQANRLNALGARLTEMGKLGNGEFNFEAPVGVGGPETPANDMPVQDLKESLGQLEQQFSSSGQQLSV
LASLLFNNQLEQNAVPSRAPVRNSYITSNFGRRVDPFNGAVAEHKGVDFHASVGSSVMAVADGVVSYAGYRNGYGNVVDV
DHSNGYLTRYAHNSRLTVKVGDLVRTGQEVAKAGSSGRSTGAHVHFELWKDGVVMNPIKFLGNPRGLQWASTNMVERQ

Specific function: Could be involved in cell wall degradation or formation [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=123, Percent_Identity=40.650406504065, Blast_Score=98, Evalue=9e-22,
Organism=Escherichia coli, GI1789099, Length=112, Percent_Identity=37.5, Blast_Score=84, Evalue=9e-18,
Organism=Escherichia coli, GI87082174, Length=156, Percent_Identity=28.8461538461538, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI87082297, Length=98, Percent_Identity=41.8367346938776, Blast_Score=75, Evalue=5e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 34497; Mature: 34366

Theoretical pI: Translated: 10.05; Mature: 10.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALVRRIKLKSYETRFECSVRRFRDFSEERPFIVLGAVLGIGLLSGIGTGAALGMVSNVR
CCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHCCCHHHHHHHHHHH
LQAKVQQQRAELEHIRGTSKAQVNALAARLGELQAQANRLNALGARLTEMGKLGNGEFNF
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE
EAPVGVGGPETPANDMPVQDLKESLGQLEQQFSSSGQQLSVLASLLFNNQLEQNAVPSRA
ECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHCCCCCCC
PVRNSYITSNFGRRVDPFNGAVAEHKGVDFHASVGSSVMAVADGVVSYAGYRNGYGNVVD
CCCCCHHHCCCCCCCCCCCCCHHHCCCCEEECCCCCHHHHHHHHHHHHHCCCCCCCCEEE
VDHSNGYLTRYAHNSRLTVKVGDLVRTGQEVAKAGSSGRSTGAHVHFELWKDGVVMNPIK
EECCCCEEEEEECCCEEEEEEHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCEEECHHH
FLGNPRGLQWASTNMVERQ
HCCCCCCCEECCCCCCCCC
>Mature Secondary Structure 
ALVRRIKLKSYETRFECSVRRFRDFSEERPFIVLGAVLGIGLLSGIGTGAALGMVSNVR
CHHHHHHHHHCCHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHCCCHHHHHHHHHHH
LQAKVQQQRAELEHIRGTSKAQVNALAARLGELQAQANRLNALGARLTEMGKLGNGEFNF
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE
EAPVGVGGPETPANDMPVQDLKESLGQLEQQFSSSGQQLSVLASLLFNNQLEQNAVPSRA
ECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHCCCCCCC
PVRNSYITSNFGRRVDPFNGAVAEHKGVDFHASVGSSVMAVADGVVSYAGYRNGYGNVVD
CCCCCHHHCCCCCCCCCCCCCHHHCCCCEEECCCCCHHHHHHHHHHHHHCCCCCCCCEEE
VDHSNGYLTRYAHNSRLTVKVGDLVRTGQEVAKAGSSGRSTGAHVHFELWKDGVVMNPIK
EECCCCEEEEEECCCEEEEEEHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCEEECHHH
FLGNPRGLQWASTNMVERQ
HCCCCCCCEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]