Definition | Xylella fastidiosa M23 chromosome, complete genome. |
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Accession | NC_010577 |
Length | 2,535,690 |
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The map label for this gene is nahA [H]
Identifier: 182682441
GI number: 182682441
Start: 2148016
End: 2150454
Strand: Direct
Name: nahA [H]
Synonym: XfasM23_1927
Alternate gene names: 182682441
Gene position: 2148016-2150454 (Clockwise)
Preceding gene: 182682440
Following gene: 182682442
Centisome position: 84.71
GC content: 60.07
Gene sequence:
>2439_bases ATGCCCCCCACCCCCGTCCACCCAACACAGGCACTCCCATTACTGCGGGCATTGCTCACCCTGTGCATTGCCGCACTGTC AACAACGAGCTTCGACACCACCGCATCACACCATAAAAAATCACAACACCCATTACCCCCGAGAACTGCTTCCGGCCCAC CACTACCACCACTACCACTGATCCCTGCACCCGTTCAAATACAACGCGGTCACGGCCAAATCCACATTGGCCCCCACACC CTGATCTCCATCCCCCCCAACGATACCGACGCACAACACAGCGCCACCTACCTAGCCACACTGCTACAGCACACCCGCAA CCTGACATTACACATCCACACCGAAACCACCCCCACACCAGACAGCATCCGCCTACAACGCGACCCACAATCACCCGTCA CTCAGACAGAAGGCTACACCCTGCAAGCCCTCCCCAACCAAGGCATGCATATCACGGCACGAGACGGAGCAGGACTGTTC TACGGCGCGATCACTGCATGGCAACTACTGACCGCCGACAGCAACCAAGGCCCAACCGAAATCCCTACCGTCACCATTCA CGACTGGCCACGCTTCAAATGGCGCGGCCAACTCCTTGACGTCGCCCGTCACTTCCACGACGTAGACACCGTCAAACACG TGATTGACGCCATGGCACAACACAAACTCAACGTCCTGCACCTACACCTCACCGACGACCAAGGCTGGCGTATCGAAATC AAACGCTACCCCAAACTCACTGCAATCGGCGCCGAACGCATCCCACCGGGCGCCGGACGCCACGGCACCCCAGAACGCTA CGGCGGCTTCTACACCCAAGATCAAATCCGCGAACTCGTGGCCTACGCCACCGAACGACAGATCACCATACTCCCCGAAA TCGACATGCCCGGCCATGCACAAGCCGCCGTGGCAGCCTACCCCGACATCATCGGAGTCACCGGCACCACCCCACCCGTC AGCGTCGACTGGGGCATCAACCCCTACCTCTTCGACACCAGCACACCCAGCCTGGACTTCATCCGCAATGTACTCGACGA AGTACTCACCCTATTCCCCTCCCAATACATCCACATCGGCGGCGACGAAGCCGTTAAAGATCAATGGGAAGCCTCACACA CCATCCACGCCCAAATGCGCAAACTGGGCGTGAAAGACACACATGCCATGCAAGGCTGGTTCAACACACAACTTTCCCAA TACCTGACAACACATGACCGACGCCTGATCGGTTGGGATGAAATCATCCAAAGCGGCCTGCCAGACAACGCCGCAGTGAT GTCCTGGCGCGGCGTCGAAGGCGCCATTACTGCCGCACAACAAGGACACGACGTCGTCCTCGCCCCCGCTGGCTGGATGT ACCTAGACAACCTGCAAACCGAACGCAACGACGAACCAAACGGCCGCCTCGCCACCCTGCCCCTCTCCCGCGTCTACGCA CTGGACCCCGTCCCCAAAGAACTGACCCCCGACCAAGCCATCCACATCCTGGGCCTACAAAGCGCCCTGTGGAGCGAATA CATCCCCTCACGCTGGCACATCGACCACGCCCTATTCCCACGCCTCGCCGCCGTCGCCGAAGTCGCCTGGTCCCCCATGA CCGCACGCAACTGGGACAACTTCCTCAAACGCCTCCCCCCACAACTACACCGCTACCGCACCCTGCACATCGACTACAGC GACGGCCCATTCGCCCCCGACATCATGCTGCAACACCGCTCAGCCTACGTCCTTGCTGGCGCCCCCCCTCACATCACACT CAGCAACCAAACCAACACCGGCCAAATTCACTACACCACAAACGGCAACGAACCGACCCTACATTCCCCCCGCTACACCG CCCCATTTCCCATCACCCTCCCCACCACCGTCAAAGCAACCGTATTCACCGAAGACGGCCGCCCCCTGGCCACCACCCGC AGCCGCACCTTCGACCACAACACACTGCTGAGCGTGGACACCCAAGAATTACGCAACTGCTCCGACAAAGGACCACTGGG ATTACGCGTCCCCCTCCTACCAGACATGCCCGACCCCAACACCCCCGTGTACAACGTCGACCTATTCCACGCCTGCTGGA TCGTCCCCCAAATACGCCTCAACAACATACAAGTCATCCACATCGACGCCGCACGCCTAGCACGCAACTACGGCCTGGCC CACGACCAATCCAAAGTCATTCAATATCCCAAACACACCGCACACGGCGAACTGGAAATCCGCACCGACTGCAACAAAAA ACCACTGGCCGTGATCCCCCTCCCGCCCGGAGACACCATCGGCGAACCATTCACCCTCGACGCCCCATTACCACCGACCA TCGGCGTCCACGACCTGTGCCTACGCATCACCGCCCCCATCCACGGCCCACTGTATGCCATTGGTCGCGTCCAACTGATC CACAACACCCCCGCATCACCTCCGCCACCCACACACTGA
Upstream 100 bases:
>100_bases TGAACTGCCCCTCGCCACCCACTAAACACTCCCCTTGGCGTGTTGCCGCGACCTGCCACCATACAACGCAGCACACGCCA ACCCCCAAGGAAACAACAGG
Downstream 100 bases:
>100_bases ACCCCACACCCCCTATGCCACGCCACCGACACATCTGCCTCCGCCTGGCCGCCTTCCCCCTACTCGCCTTTGGCACCCTC CTCACTGCCTCGGCCGCCCC
Product: beta-N-acetylhexosaminidase
Products: NA
Alternate protein names: Beta-GlcNAcase; Beta-N-acetylhexosaminidase; Beta-NAHase; N-acetyl-beta-glucosaminidase [H]
Number of amino acids: Translated: 812; Mature: 811
Protein sequence:
>812_residues MPPTPVHPTQALPLLRALLTLCIAALSTTSFDTTASHHKKSQHPLPPRTASGPPLPPLPLIPAPVQIQRGHGQIHIGPHT LISIPPNDTDAQHSATYLATLLQHTRNLTLHIHTETTPTPDSIRLQRDPQSPVTQTEGYTLQALPNQGMHITARDGAGLF YGAITAWQLLTADSNQGPTEIPTVTIHDWPRFKWRGQLLDVARHFHDVDTVKHVIDAMAQHKLNVLHLHLTDDQGWRIEI KRYPKLTAIGAERIPPGAGRHGTPERYGGFYTQDQIRELVAYATERQITILPEIDMPGHAQAAVAAYPDIIGVTGTTPPV SVDWGINPYLFDTSTPSLDFIRNVLDEVLTLFPSQYIHIGGDEAVKDQWEASHTIHAQMRKLGVKDTHAMQGWFNTQLSQ YLTTHDRRLIGWDEIIQSGLPDNAAVMSWRGVEGAITAAQQGHDVVLAPAGWMYLDNLQTERNDEPNGRLATLPLSRVYA LDPVPKELTPDQAIHILGLQSALWSEYIPSRWHIDHALFPRLAAVAEVAWSPMTARNWDNFLKRLPPQLHRYRTLHIDYS DGPFAPDIMLQHRSAYVLAGAPPHITLSNQTNTGQIHYTTNGNEPTLHSPRYTAPFPITLPTTVKATVFTEDGRPLATTR SRTFDHNTLLSVDTQELRNCSDKGPLGLRVPLLPDMPDPNTPVYNVDLFHACWIVPQIRLNNIQVIHIDAARLARNYGLA HDQSKVIQYPKHTAHGELEIRTDCNKKPLAVIPLPPGDTIGEPFTLDAPLPPTIGVHDLCLRITAPIHGPLYAIGRVQLI HNTPASPPPPTH
Sequences:
>Translated_812_residues MPPTPVHPTQALPLLRALLTLCIAALSTTSFDTTASHHKKSQHPLPPRTASGPPLPPLPLIPAPVQIQRGHGQIHIGPHT LISIPPNDTDAQHSATYLATLLQHTRNLTLHIHTETTPTPDSIRLQRDPQSPVTQTEGYTLQALPNQGMHITARDGAGLF YGAITAWQLLTADSNQGPTEIPTVTIHDWPRFKWRGQLLDVARHFHDVDTVKHVIDAMAQHKLNVLHLHLTDDQGWRIEI KRYPKLTAIGAERIPPGAGRHGTPERYGGFYTQDQIRELVAYATERQITILPEIDMPGHAQAAVAAYPDIIGVTGTTPPV SVDWGINPYLFDTSTPSLDFIRNVLDEVLTLFPSQYIHIGGDEAVKDQWEASHTIHAQMRKLGVKDTHAMQGWFNTQLSQ YLTTHDRRLIGWDEIIQSGLPDNAAVMSWRGVEGAITAAQQGHDVVLAPAGWMYLDNLQTERNDEPNGRLATLPLSRVYA LDPVPKELTPDQAIHILGLQSALWSEYIPSRWHIDHALFPRLAAVAEVAWSPMTARNWDNFLKRLPPQLHRYRTLHIDYS DGPFAPDIMLQHRSAYVLAGAPPHITLSNQTNTGQIHYTTNGNEPTLHSPRYTAPFPITLPTTVKATVFTEDGRPLATTR SRTFDHNTLLSVDTQELRNCSDKGPLGLRVPLLPDMPDPNTPVYNVDLFHACWIVPQIRLNNIQVIHIDAARLARNYGLA HDQSKVIQYPKHTAHGELEIRTDCNKKPLAVIPLPPGDTIGEPFTLDAPLPPTIGVHDLCLRITAPIHGPLYAIGRVQLI HNTPASPPPPTH >Mature_811_residues PPTPVHPTQALPLLRALLTLCIAALSTTSFDTTASHHKKSQHPLPPRTASGPPLPPLPLIPAPVQIQRGHGQIHIGPHTL ISIPPNDTDAQHSATYLATLLQHTRNLTLHIHTETTPTPDSIRLQRDPQSPVTQTEGYTLQALPNQGMHITARDGAGLFY GAITAWQLLTADSNQGPTEIPTVTIHDWPRFKWRGQLLDVARHFHDVDTVKHVIDAMAQHKLNVLHLHLTDDQGWRIEIK RYPKLTAIGAERIPPGAGRHGTPERYGGFYTQDQIRELVAYATERQITILPEIDMPGHAQAAVAAYPDIIGVTGTTPPVS VDWGINPYLFDTSTPSLDFIRNVLDEVLTLFPSQYIHIGGDEAVKDQWEASHTIHAQMRKLGVKDTHAMQGWFNTQLSQY LTTHDRRLIGWDEIIQSGLPDNAAVMSWRGVEGAITAAQQGHDVVLAPAGWMYLDNLQTERNDEPNGRLATLPLSRVYAL DPVPKELTPDQAIHILGLQSALWSEYIPSRWHIDHALFPRLAAVAEVAWSPMTARNWDNFLKRLPPQLHRYRTLHIDYSD GPFAPDIMLQHRSAYVLAGAPPHITLSNQTNTGQIHYTTNGNEPTLHSPRYTAPFPITLPTTVKATVFTEDGRPLATTRS RTFDHNTLLSVDTQELRNCSDKGPLGLRVPLLPDMPDPNTPVYNVDLFHACWIVPQIRLNNIQVIHIDAARLARNYGLAH DQSKVIQYPKHTAHGELEIRTDCNKKPLAVIPLPPGDTIGEPFTLDAPLPPTIGVHDLCLRITAPIHGPLYAIGRVQLIH NTPASPPPPTH
Specific function: Unknown
COG id: COG3525
COG function: function code G; N-acetyl-beta-hexosaminidase
Gene ontology:
Cell location: Cell outer membrane; Lipid-anchor (Probable) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 20 family [H]
Homologues:
Organism=Homo sapiens, GI4504373, Length=527, Percent_Identity=27.5142314990512, Blast_Score=149, Evalue=1e-35, Organism=Homo sapiens, GI189181666, Length=407, Percent_Identity=27.5184275184275, Blast_Score=137, Evalue=5e-32, Organism=Caenorhabditis elegans, GI17569815, Length=394, Percent_Identity=29.4416243654822, Blast_Score=156, Evalue=4e-38, Organism=Drosophila melanogaster, GI24657468, Length=495, Percent_Identity=26.4646464646465, Blast_Score=133, Evalue=6e-31, Organism=Drosophila melanogaster, GI17647501, Length=495, Percent_Identity=26.4646464646465, Blast_Score=133, Evalue=6e-31, Organism=Drosophila melanogaster, GI281365639, Length=495, Percent_Identity=26.4646464646465, Blast_Score=132, Evalue=8e-31, Organism=Drosophila melanogaster, GI24657474, Length=495, Percent_Identity=26.4646464646465, Blast_Score=132, Evalue=8e-31, Organism=Drosophila melanogaster, GI17933586, Length=420, Percent_Identity=27.6190476190476, Blast_Score=105, Evalue=2e-22, Organism=Drosophila melanogaster, GI24653074, Length=444, Percent_Identity=25.2252252252252, Blast_Score=96, Evalue=1e-19, Organism=Drosophila melanogaster, GI45551090, Length=420, Percent_Identity=25.4761904761905, Blast_Score=96, Evalue=1e-19,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015882 - InterPro: IPR001540 - InterPro: IPR015883 - InterPro: IPR017853 - InterPro: IPR013781 - InterPro: IPR011658 [H]
Pfam domain/function: PF00728 Glyco_hydro_20; PF02838 Glyco_hydro_20b [H]
EC number: =3.2.1.52 [H]
Molecular weight: Translated: 90112; Mature: 89981
Theoretical pI: Translated: 6.90; Mature: 6.90
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPPTPVHPTQALPLLRALLTLCIAALSTTSFDTTASHHKKSQHPLPPRTASGPPLPPLPL CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCC IPAPVQIQRGHGQIHIGPHTLISIPPNDTDAQHSATYLATLLQHTRNLTLHIHTETTPTP CCCCEEEECCCCEEEECCEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCC DSIRLQRDPQSPVTQTEGYTLQALPNQGMHITARDGAGLFYGAITAWQLLTADSNQGPTE CCEEEECCCCCCCCCCCCEEEEECCCCCCEEEEECCCCEEEHHHHEEEEEECCCCCCCCC IPTVTIHDWPRFKWRGQLLDVARHFHDVDTVKHVIDAMAQHKLNVLHLHLTDDQGWRIEI CCEEEEECCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCEEEE KRYPKLTAIGAERIPPGAGRHGTPERYGGFYTQDQIRELVAYATERQITILPEIDMPGHA EECCCEEEECCCCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCC QAAVAAYPDIIGVTGTTPPVSVDWGINPYLFDTSTPSLDFIRNVLDEVLTLFPSQYIHIG CCHHHHCCCEEECCCCCCCEEEECCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEC GDEAVKDQWEASHTIHAQMRKLGVKDTHAMQGWFNTQLSQYLTTHDRRLIGWDEIIQSGL CCHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCEEECHHHHHHCCC PDNAAVMSWRGVEGAITAAQQGHDVVLAPAGWMYLDNLQTERNDEPNGRLATLPLSRVYA CCCCEEEEECCCCCEEEHHCCCCEEEECCCCEEEECCCCCCCCCCCCCEEEEEEHHHEEE LDPVPKELTPDQAIHILGLQSALWSEYIPSRWHIDHALFPRLAAVAEVAWSPMTARNWDN CCCCCCCCCCCCEEEEEEHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHH FLKRLPPQLHRYRTLHIDYSDGPFAPDIMLQHRSAYVLAGAPPHITLSNQTNTGQIHYTT HHHHCCHHHHCEEEEEEECCCCCCCCHHEEECCCEEEEECCCCEEEECCCCCCCEEEEEE NGNEPTLHSPRYTAPFPITLPTTVKATVFTEDGRPLATTRSRTFDHNTLLSVDTQELRNC CCCCCCCCCCCCCCCCCEECCCEEEEEEEECCCCEEEECCCCCCCCCEEEEECHHHHHCC SDKGPLGLRVPLLPDMPDPNTPVYNVDLFHACWIVPQIRLNNIQVIHIDAARLARNYGLA CCCCCCEEEECCCCCCCCCCCCEEEEEHHEEEHEECEEEECCEEEEEECHHHHHHHCCCC HDQSKVIQYPKHTAHGELEIRTDCNKKPLAVIPLPPGDTIGEPFTLDAPLPPTIGVHDLC CCCHHHHCCCCCCCCCEEEEEECCCCCCEEEEECCCCCCCCCCEEECCCCCCCCCHHHEE LRITAPIHGPLYAIGRVQLIHNTPASPPPPTH EEEECCCCCCEEEEEEEEEEECCCCCCCCCCC >Mature Secondary Structure PPTPVHPTQALPLLRALLTLCIAALSTTSFDTTASHHKKSQHPLPPRTASGPPLPPLPL CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCC IPAPVQIQRGHGQIHIGPHTLISIPPNDTDAQHSATYLATLLQHTRNLTLHIHTETTPTP CCCCEEEECCCCEEEECCEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCC DSIRLQRDPQSPVTQTEGYTLQALPNQGMHITARDGAGLFYGAITAWQLLTADSNQGPTE CCEEEECCCCCCCCCCCCEEEEECCCCCCEEEEECCCCEEEHHHHEEEEEECCCCCCCCC IPTVTIHDWPRFKWRGQLLDVARHFHDVDTVKHVIDAMAQHKLNVLHLHLTDDQGWRIEI CCEEEEECCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCEEEE KRYPKLTAIGAERIPPGAGRHGTPERYGGFYTQDQIRELVAYATERQITILPEIDMPGHA EECCCEEEECCCCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCC QAAVAAYPDIIGVTGTTPPVSVDWGINPYLFDTSTPSLDFIRNVLDEVLTLFPSQYIHIG CCHHHHCCCEEECCCCCCCEEEECCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEC GDEAVKDQWEASHTIHAQMRKLGVKDTHAMQGWFNTQLSQYLTTHDRRLIGWDEIIQSGL CCHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCEEECHHHHHHCCC PDNAAVMSWRGVEGAITAAQQGHDVVLAPAGWMYLDNLQTERNDEPNGRLATLPLSRVYA CCCCEEEEECCCCCEEEHHCCCCEEEECCCCEEEECCCCCCCCCCCCCEEEEEEHHHEEE LDPVPKELTPDQAIHILGLQSALWSEYIPSRWHIDHALFPRLAAVAEVAWSPMTARNWDN CCCCCCCCCCCCEEEEEEHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHH FLKRLPPQLHRYRTLHIDYSDGPFAPDIMLQHRSAYVLAGAPPHITLSNQTNTGQIHYTT HHHHCCHHHHCEEEEEEECCCCCCCCHHEEECCCEEEEECCCCEEEECCCCCCCEEEEEE NGNEPTLHSPRYTAPFPITLPTTVKATVFTEDGRPLATTRSRTFDHNTLLSVDTQELRNC CCCCCCCCCCCCCCCCCEECCCEEEEEEEECCCCEEEECCCCCCCCCEEEEECHHHHHCC SDKGPLGLRVPLLPDMPDPNTPVYNVDLFHACWIVPQIRLNNIQVIHIDAARLARNYGLA CCCCCCEEEECCCCCCCCCCCCEEEEEHHEEEHEECEEEECCEEEEEECHHHHHHHCCCC HDQSKVIQYPKHTAHGELEIRTDCNKKPLAVIPLPPGDTIGEPFTLDAPLPPTIGVHDLC CCCHHHHCCCCCCCCCEEEEEECCCCCCEEEEECCCCCCCCCCEEECCCCCCCCCHHHEE LRITAPIHGPLYAIGRVQLIHNTPASPPPPTH EEEECCCCCCEEEEEEEEEEECCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7881557; 12949112 [H]