Click here to switch to the map view.

The map label for this gene is yaaH [H]

Identifier: 182682440

GI number: 182682440

Start: 2146870

End: 2147940

Strand: Direct

Name: yaaH [H]

Synonym: XfasM23_1926

Alternate gene names: 182682440

Gene position: 2146870-2147940 (Clockwise)

Preceding gene: 182682439

Following gene: 182682441

Centisome position: 84.67

GC content: 53.59

Gene sequence:

>1071_bases
ATGGACTCCCCCCGTATGACACAACGTCCCTTCGCCCTACTACTAACACTCATTTTTGCACTGCCTGCGACCGCAAAAAA
TCCAACGGCCCTGTTCTACTTGATGAACAGCGATAAATCGACAAACTCCTTCCTTGCCCACGCCGACAAAATCGACACAC
TCGTCCCCACCTGGTACAGAGTAGACCCAACGGGAGTTGTCAACGGCACACCTAACGAACACGTCTACCGCATCGCCCAA
CAAAAGAAAATCACCCTCACCCCCATCCTCTCCATGTCCGGCAGCCGCGACGGCTTTCACACACTTCTGCATGACGAAGC
AGCAAAAACCCGGATGAACACATTCCTGGTAAAAGAAAGCAAAGCACGCGGCTACAAAGGCTTCCAATTCGACTTTGAAA
ACATCGCCCAAACCGACCGTGGCGCCTATACCTTGATGGTCAAACAGACCGCCGAAGCCCTACATAAAGCAGGCATGACC
CTATCAATCGCCATCGTCCCCAATGCACCTGGCCACCCAGAAGAAGGAGGCGACTTCTCCAAATGGATGTGGGAATACTG
GCGCGGTGTCTACGACCTGAAAGCACTCGGTCAAGCCGCCGACCTCATCAGCCTGATGACCTACGACCAACACACCCGTT
GGACCACCCCCGGCCCCGTTGCCGGCATGCCCTGGACCAAAAAGCACTTGGAATACGCACTGACCCAGGTACCGAAAGAA
AAACTATCTCTGGGAATCCCCACCTATGGCTACCGCTGGTTCACCGGTAACCCAGTCAGAAAAGACGGCACTGAAAACTC
CAACATTTCCGGCACCTACATTGACGCCGACAAATCATTCCCATTAGCCATCGCACAAAAAGCCAACGTGCAATGGGATC
CTATAGAACAAGAATCATGGTTCTACTTTTACCGCGACAACATGCGCGAATGGGTCTTCCGCCCTGACGCACACAGCTTC
CGTGCACGCTATGACCTGGTGAAACAGAATGGACTCCAGGGTTTCAGCTGCTGGGTGCTTGGTGCCGAAGACCCAAAAAT
GTGGGATGAACTGCCCCTCGCCACCCACTAA

Upstream 100 bases:

>100_bases
CCTACACCATCCCAATAAACAGCCGCCCCCTGCAACCTGCCCCCTCAACCCCATAGACATTCCCGATCGCGTAACACCAC
CTTCTTTCATCCACCATTTG

Downstream 100 bases:

>100_bases
ACACTCCCCTTGGCGTGTTGCCGCGACCTGCCACCATACAACGCAGCACACGCCAACCCCCAAGGAAACAACAGGATGCC
CCCCACCCCCGTCCACCCAA

Product: glycoside hydrolase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 356; Mature: 356

Protein sequence:

>356_residues
MDSPRMTQRPFALLLTLIFALPATAKNPTALFYLMNSDKSTNSFLAHADKIDTLVPTWYRVDPTGVVNGTPNEHVYRIAQ
QKKITLTPILSMSGSRDGFHTLLHDEAAKTRMNTFLVKESKARGYKGFQFDFENIAQTDRGAYTLMVKQTAEALHKAGMT
LSIAIVPNAPGHPEEGGDFSKWMWEYWRGVYDLKALGQAADLISLMTYDQHTRWTTPGPVAGMPWTKKHLEYALTQVPKE
KLSLGIPTYGYRWFTGNPVRKDGTENSNISGTYIDADKSFPLAIAQKANVQWDPIEQESWFYFYRDNMREWVFRPDAHSF
RARYDLVKQNGLQGFSCWVLGAEDPKMWDELPLATH

Sequences:

>Translated_356_residues
MDSPRMTQRPFALLLTLIFALPATAKNPTALFYLMNSDKSTNSFLAHADKIDTLVPTWYRVDPTGVVNGTPNEHVYRIAQ
QKKITLTPILSMSGSRDGFHTLLHDEAAKTRMNTFLVKESKARGYKGFQFDFENIAQTDRGAYTLMVKQTAEALHKAGMT
LSIAIVPNAPGHPEEGGDFSKWMWEYWRGVYDLKALGQAADLISLMTYDQHTRWTTPGPVAGMPWTKKHLEYALTQVPKE
KLSLGIPTYGYRWFTGNPVRKDGTENSNISGTYIDADKSFPLAIAQKANVQWDPIEQESWFYFYRDNMREWVFRPDAHSF
RARYDLVKQNGLQGFSCWVLGAEDPKMWDELPLATH
>Mature_356_residues
MDSPRMTQRPFALLLTLIFALPATAKNPTALFYLMNSDKSTNSFLAHADKIDTLVPTWYRVDPTGVVNGTPNEHVYRIAQ
QKKITLTPILSMSGSRDGFHTLLHDEAAKTRMNTFLVKESKARGYKGFQFDFENIAQTDRGAYTLMVKQTAEALHKAGMT
LSIAIVPNAPGHPEEGGDFSKWMWEYWRGVYDLKALGQAADLISLMTYDQHTRWTTPGPVAGMPWTKKHLEYALTQVPKE
KLSLGIPTYGYRWFTGNPVRKDGTENSNISGTYIDADKSFPLAIAQKANVQWDPIEQESWFYFYRDNMREWVFRPDAHSF
RARYDLVKQNGLQGFSCWVLGAEDPKMWDELPLATH

Specific function: May be required for the L-alanine-stimulated germination pathway [H]

COG id: COG3858

COG function: function code R; Predicted glycosyl hydrolase

Gene ontology:

Cell location: Spore wall (Probable). Note=Probably localized either on the surface of the outer spore membrane and/or in the inner spore coat [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 2 LysM repeats [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011583
- InterPro:   IPR001223
- InterPro:   IPR017853
- InterPro:   IPR013781
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF00704 Glyco_hydro_18; PF01476 LysM [H]

EC number: NA

Molecular weight: Translated: 40545; Mature: 40545

Theoretical pI: Translated: 8.36; Mature: 8.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSPRMTQRPFALLLTLIFALPATAKNPTALFYLMNSDKSTNSFLAHADKIDTLVPTWYR
CCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHCCCEEE
VDPTGVVNGTPNEHVYRIAQQKKITLTPILSMSGSRDGFHTLLHDEAAKTRMNTFLVKES
ECCCCEECCCCCHHHHHHHHCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHEEEECC
KARGYKGFQFDFENIAQTDRGAYTLMVKQTAEALHKAGMTLSIAIVPNAPGHPEEGGDFS
CCCCCCCCCCCHHHHHCCCCCEEEEEEHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCHH
KWMWEYWRGVYDLKALGQAADLISLMTYDQHTRWTTPGPVAGMPWTKKHLEYALTQVPKE
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCHH
KLSLGIPTYGYRWFTGNPVRKDGTENSNISGTYIDADKSFPLAIAQKANVQWDPIEQESW
HHHCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCCEEEEECCCCCCCCCCCCCE
FYFYRDNMREWVFRPDAHSFRARYDLVKQNGLQGFSCWVLGAEDPKMWDELPLATH
EEEEECCCHHEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCHHHCCCCCCC
>Mature Secondary Structure
MDSPRMTQRPFALLLTLIFALPATAKNPTALFYLMNSDKSTNSFLAHADKIDTLVPTWYR
CCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHCCCEEE
VDPTGVVNGTPNEHVYRIAQQKKITLTPILSMSGSRDGFHTLLHDEAAKTRMNTFLVKES
ECCCCEECCCCCHHHHHHHHCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHEEEECC
KARGYKGFQFDFENIAQTDRGAYTLMVKQTAEALHKAGMTLSIAIVPNAPGHPEEGGDFS
CCCCCCCCCCCHHHHHCCCCCEEEEEEHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCHH
KWMWEYWRGVYDLKALGQAADLISLMTYDQHTRWTTPGPVAGMPWTKKHLEYALTQVPKE
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCHH
KLSLGIPTYGYRWFTGNPVRKDGTENSNISGTYIDADKSFPLAIAQKANVQWDPIEQESW
HHHCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCCEEEEECCCCCCCCCCCCCE
FYFYRDNMREWVFRPDAHSFRARYDLVKQNGLQGFSCWVLGAEDPKMWDELPLATH
EEEEECCCHHEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377; 10419957 [H]