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The map label for this gene is dadA

Identifier: 182682438

GI number: 182682438

Start: 2144538

End: 2145845

Strand: Reverse

Name: dadA

Synonym: XfasM23_1924

Alternate gene names: 182682438

Gene position: 2145845-2144538 (Counterclockwise)

Preceding gene: 182682444

Following gene: 182682437

Centisome position: 84.63

GC content: 55.89

Gene sequence:

>1308_bases
ATGCGCGTGCTCATTTTGGGAAGCGGCGTGATCGGTACCACCAGTGCCTGGTATCTGTCCAAGGCTGGTTGTGAGGTAGT
GGTGGTGGATCGTCAGTCTGGTGCTGGTCTGGAGACCAGTTATGCCAATGGTGGTCAGCTGTCTTTTGGTTATACCTCGC
CCTGGGCGGCCCCCGGTGTTCCGTTGAAGGCTGTGAGGTGGTTGTTTGAGCGGCATGCGCCGCTGTCGATTCGTCCGACG
ACTGATTGGAATCAGTATGTTTGGTTGGCACGGATGTTGCGCCATTGCTCTGCTGAGCGCTATGCAGTGAATAAGTCGCG
GATGTTGCGTCTCAGTGAGTACAGTCGTGAAGCGTTGGAGGCGTTATCTGCTGAAACTGGGATCACGTTCGAGGGGCGCC
GTTTAGGGACTATTCAGTTATTTCGGACGCAGCAGCAGCTTGATGGGGCTGTTCGGGATATCGAACTACTCACTCAGTAC
GGTATTCCATACGAGGTGCTCAGTCCGCATCAGCTTGCTAAGTTTGAGCCTGGTTTGGCCGATGGTAGCGTCCGTTTTGT
GGGTGCGCTGCGCTTGCCTCATGATCAGACTGGGGATTGTTGTTTGTTCACGCAACGGTTGGCTGCGTTGGCGGCTAAGC
GTGGGGTTGAGTTCCGTTACGGTTGTACGGTGCAACGCTTGGAAGTGGATGGTCCTCGTGTGACGGGTGCTTGGATCAAT
GGAGCGTTGGAGCGTGCCGATTGTTGTGTGGTTGCGCTCGGTAGTTATTCGCCGCTGTTATTGGCGCCGTTGGGCTTGCG
TTTGCCAGTGTATCCGTTGAAAGGGTTTTCGTTGACGTTGCCGATGATTGATGCGTCGCGTGCGCCCGTTTCGACGGTGC
TTGACGAAAGTTACAAGGTTGCGGTTACTCGTTTCGATGAACGTATCCGTGTGGCGGGTATGGCAGAGGTCTCTGGTTAC
GATGTGTCGTTGAATCCACGTCGCCGTTCGACGTTGGAGATGGTGGTGCAGGATGTGTACCCTGGGTGCGGTGATTTGGG
GCGTGGCGAGTTTTGGACTGGGCTGCGCCCGGCGACGCCGGATGGGACCCCGGTGATCGGTGCGACGCCCTATCAGGGTT
TGTTTCTTAATACTGGGCACGGCACGCTTGGTTGGACGATGTCATCCGGTTCAGGCCGTTATTTAGCCGATTTGATATGT
TGTCGCCCTTGTGAAATCTCCAGTGAAGGGTTGGATATGTTCCGTTACTTGGTGTCGACGATACCTTGCCCGCAAGAGTG
TGCTCCGTGCGTCCCGCCCACGCCGTAA

Upstream 100 bases:

>100_bases
GGGTTTCAGTAACAAAAGCATGTGTAGCAGCTTATATGGTGCTCGGATATAGTGCTCCGACTGTGATTGCTGTATGGAAT
AATCTGGACGGAGATTTCGG

Downstream 100 bases:

>100_bases
TTGATCTGGATGCGTTACGTCACAATTATCGATTTGCTCGCCGTCTTGGCGGTGGCAAGGCGTTAGCTGTGGTGAAAGCC
GATGCGTATGGTCACGGTGC

Product: D-amino acid dehydrogenase small subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 435; Mature: 435

Protein sequence:

>435_residues
MRVLILGSGVIGTTSAWYLSKAGCEVVVVDRQSGAGLETSYANGGQLSFGYTSPWAAPGVPLKAVRWLFERHAPLSIRPT
TDWNQYVWLARMLRHCSAERYAVNKSRMLRLSEYSREALEALSAETGITFEGRRLGTIQLFRTQQQLDGAVRDIELLTQY
GIPYEVLSPHQLAKFEPGLADGSVRFVGALRLPHDQTGDCCLFTQRLAALAAKRGVEFRYGCTVQRLEVDGPRVTGAWIN
GALERADCCVVALGSYSPLLLAPLGLRLPVYPLKGFSLTLPMIDASRAPVSTVLDESYKVAVTRFDERIRVAGMAEVSGY
DVSLNPRRRSTLEMVVQDVYPGCGDLGRGEFWTGLRPATPDGTPVIGATPYQGLFLNTGHGTLGWTMSSGSGRYLADLIC
CRPCEISSEGLDMFRYLVSTIPCPQECAPCVPPTP

Sequences:

>Translated_435_residues
MRVLILGSGVIGTTSAWYLSKAGCEVVVVDRQSGAGLETSYANGGQLSFGYTSPWAAPGVPLKAVRWLFERHAPLSIRPT
TDWNQYVWLARMLRHCSAERYAVNKSRMLRLSEYSREALEALSAETGITFEGRRLGTIQLFRTQQQLDGAVRDIELLTQY
GIPYEVLSPHQLAKFEPGLADGSVRFVGALRLPHDQTGDCCLFTQRLAALAAKRGVEFRYGCTVQRLEVDGPRVTGAWIN
GALERADCCVVALGSYSPLLLAPLGLRLPVYPLKGFSLTLPMIDASRAPVSTVLDESYKVAVTRFDERIRVAGMAEVSGY
DVSLNPRRRSTLEMVVQDVYPGCGDLGRGEFWTGLRPATPDGTPVIGATPYQGLFLNTGHGTLGWTMSSGSGRYLADLIC
CRPCEISSEGLDMFRYLVSTIPCPQECAPCVPPTP
>Mature_435_residues
MRVLILGSGVIGTTSAWYLSKAGCEVVVVDRQSGAGLETSYANGGQLSFGYTSPWAAPGVPLKAVRWLFERHAPLSIRPT
TDWNQYVWLARMLRHCSAERYAVNKSRMLRLSEYSREALEALSAETGITFEGRRLGTIQLFRTQQQLDGAVRDIELLTQY
GIPYEVLSPHQLAKFEPGLADGSVRFVGALRLPHDQTGDCCLFTQRLAALAAKRGVEFRYGCTVQRLEVDGPRVTGAWIN
GALERADCCVVALGSYSPLLLAPLGLRLPVYPLKGFSLTLPMIDASRAPVSTVLDESYKVAVTRFDERIRVAGMAEVSGY
DVSLNPRRRSTLEMVVQDVYPGCGDLGRGEFWTGLRPATPDGTPVIGATPYQGLFLNTGHGTLGWTMSSGSGRYLADLIC
CRPCEISSEGLDMFRYLVSTIPCPQECAPCVPPTP

Specific function: Oxidative deamination of D-amino acids

COG id: COG0665

COG function: function code E; Glycine/D-amino acid oxidases (deaminating)

Gene ontology:

Cell location: Inner Membrane-Bound [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DadA oxidoreductase family

Homologues:

Organism=Escherichia coli, GI1787438, Length=416, Percent_Identity=54.8076923076923, Blast_Score=470, Evalue=1e-134,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): DADA_XYLF2 (B2I8Y3)

Other databases:

- EMBL:   CP001011
- RefSeq:   YP_001830598.1
- ProteinModelPortal:   B2I8Y3
- GeneID:   6202471
- GenomeReviews:   CP001011_GR
- KEGG:   xfn:XfasM23_1924
- HOGENOM:   HBG729204
- OMA:   LEHAGGQ
- ProtClustDB:   PRK00711
- HAMAP:   MF_01202
- InterPro:   IPR023080
- InterPro:   IPR006076

Pfam domain/function: PF01266 DAO

EC number: =1.4.99.1

Molecular weight: Translated: 47540; Mature: 47540

Theoretical pI: Translated: 7.74; Mature: 7.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
3.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVLILGSGVIGTTSAWYLSKAGCEVVVVDRQSGAGLETSYANGGQLSFGYTSPWAAPGV
CEEEEEECCCCCCCCHHEEECCCCEEEEEECCCCCCCEECCCCCCEEEECCCCCCCCCCC
PLKAVRWLFERHAPLSIRPTTDWNQYVWLARMLRHCSAERYAVNKSRMLRLSEYSREALE
CHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCHHEECCHHHHHHHHHHHHHHHH
ALSAETGITFEGRRLGTIQLFRTQQQLDGAVRDIELLTQYGIPYEVLSPHQLAKFEPGLA
HHHHCCCCEECCCEEEEEEEEHHHHHHHHHHHHHHHHHHCCCCHHHCCCCHHHHCCCCCC
DGSVRFVGALRLPHDQTGDCCLFTQRLAALAAKRGVEFRYGCTVQRLEVDGPRVTGAWIN
CCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEECCEEEEEECCCCEEEHHHHH
GALERADCCVVALGSYSPLLLAPLGLRLPVYPLKGFSLTLPMIDASRAPVSTVLDESYKV
CHHHCCCEEEEEECCCCCHHEECCCCCCEEEECCCCEEEEEEECCCCCCHHHHHCCCEEE
AVTRFDERIRVAGMAEVSGYDVSLNPRRRSTLEMVVQDVYPGCGDLGRGEFWTGLRPATP
EEEECCCCEEEEEEEEECCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
DGTPVIGATPYQGLFLNTGHGTLGWTMSSGSGRYLADLICCRPCEISSEGLDMFRYLVST
CCCEEEECCCCCCEEEECCCCEEEEEEECCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHH
IPCPQECAPCVPPTP
CCCCHHCCCCCCCCC
>Mature Secondary Structure
MRVLILGSGVIGTTSAWYLSKAGCEVVVVDRQSGAGLETSYANGGQLSFGYTSPWAAPGV
CEEEEEECCCCCCCCHHEEECCCCEEEEEECCCCCCCEECCCCCCEEEECCCCCCCCCCC
PLKAVRWLFERHAPLSIRPTTDWNQYVWLARMLRHCSAERYAVNKSRMLRLSEYSREALE
CHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCHHEECCHHHHHHHHHHHHHHHH
ALSAETGITFEGRRLGTIQLFRTQQQLDGAVRDIELLTQYGIPYEVLSPHQLAKFEPGLA
HHHHCCCCEECCCEEEEEEEEHHHHHHHHHHHHHHHHHHCCCCHHHCCCCHHHHCCCCCC
DGSVRFVGALRLPHDQTGDCCLFTQRLAALAAKRGVEFRYGCTVQRLEVDGPRVTGAWIN
CCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEECCEEEEEECCCCEEEHHHHH
GALERADCCVVALGSYSPLLLAPLGLRLPVYPLKGFSLTLPMIDASRAPVSTVLDESYKV
CHHHCCCEEEEEECCCCCHHEECCCCCCEEEECCCCEEEEEEECCCCCCHHHHHCCCEEE
AVTRFDERIRVAGMAEVSGYDVSLNPRRRSTLEMVVQDVYPGCGDLGRGEFWTGLRPATP
EEEECCCCEEEEEEEEECCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
DGTPVIGATPYQGLFLNTGHGTLGWTMSSGSGRYLADLICCRPCEISSEGLDMFRYLVST
CCCEEEECCCCCCEEEECCCCEEEEEEECCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHH
IPCPQECAPCVPPTP
CCCCHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA