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The map label for this gene is ygeR [C]

Identifier: 182682435

GI number: 182682435

Start: 2139513

End: 2140247

Strand: Direct

Name: ygeR [C]

Synonym: XfasM23_1921

Alternate gene names: 182682435

Gene position: 2139513-2140247 (Clockwise)

Preceding gene: 182682434

Following gene: 182682439

Centisome position: 84.38

GC content: 54.01

Gene sequence:

>735_bases
ATGGAAAGGTCAATGGAGATATCAAAACTATTACTGTCAACAGCACTCGCACTAGCACTCACTGCCTGCAGCACTGCCAC
TGCGGTACGCCCCAACAATACGAGCAACCCACGCACCACCGCCAAATCCAACCAAACTGTGGTTGTGAAACAGGGCGACA
CACTATATGCAATCTCACGCCGCACCGGCGTTGCACCGCAAGATCTCGCCGCATGGAACAGGCTCACTGCATCCAAAACC
ATCTACCCGGGCCAAGTACTGCGTTTGTATCCAGAGGATGCAACAGCATCGCCCACGCCCACGCCCACACAGCCCGTCAC
ATCCCGACCCACACCCTCAAACCCATCCCCAACGACAACCAGCACCGCTCCAGCAAATAGCGGCTTCAATTGGTTCTGGC
CAACCGAGGGCGCTGTCGTCAGCAATTTCGTCGCTGGCCAAACCACCAAACAAGGCGTGAGTATCAACGGCAACAACGGT
CAAACCATTCGCGCCGCTGCCAACGGTACAGTGGTGTACTCCGGATCGGCCCTGATAGGTTACGGCGAATTAATCATCAT
CAAACACAACGAGCAATGGATCTCTGCATACGGCCATAACCGAAAACGTCTGGTCAATGAGGGACAAACCGTCAAAGCAA
ACCAACCCATTGCCGAAATGGGCCGCATGCTGTATTTCGAGATCCGCTACAACGGTAAACCCGTCGATCCACTGGTTTAT
CTCCCCAAGAAATAA

Upstream 100 bases:

>100_bases
AAACCCTACTGCATCGATGGATTGAACCCCTTGGCTGGATCACCAGCGCGCTTCTGATCGGTCTGGTTGGCTGGGTTATC
TGGAAAACCAAATTTGGATA

Downstream 100 bases:

>100_bases
CACACCACCGGCGATTCCAAGCAAACCCGTGCAAACGTCAATCGTCCTGCTTGAATCTGCTATTTTGCGAAGTCGTCCTA
TCGAACACCATTACAGCGCT

Product: peptidase M23

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 244; Mature: 244

Protein sequence:

>244_residues
MERSMEISKLLLSTALALALTACSTATAVRPNNTSNPRTTAKSNQTVVVKQGDTLYAISRRTGVAPQDLAAWNRLTASKT
IYPGQVLRLYPEDATASPTPTPTQPVTSRPTPSNPSPTTTSTAPANSGFNWFWPTEGAVVSNFVAGQTTKQGVSINGNNG
QTIRAAANGTVVYSGSALIGYGELIIIKHNEQWISAYGHNRKRLVNEGQTVKANQPIAEMGRMLYFEIRYNGKPVDPLVY
LPKK

Sequences:

>Translated_244_residues
MERSMEISKLLLSTALALALTACSTATAVRPNNTSNPRTTAKSNQTVVVKQGDTLYAISRRTGVAPQDLAAWNRLTASKT
IYPGQVLRLYPEDATASPTPTPTQPVTSRPTPSNPSPTTTSTAPANSGFNWFWPTEGAVVSNFVAGQTTKQGVSINGNNG
QTIRAAANGTVVYSGSALIGYGELIIIKHNEQWISAYGHNRKRLVNEGQTVKANQPIAEMGRMLYFEIRYNGKPVDPLVY
LPKK
>Mature_244_residues
MERSMEISKLLLSTALALALTACSTATAVRPNNTSNPRTTAKSNQTVVVKQGDTLYAISRRTGVAPQDLAAWNRLTASKT
IYPGQVLRLYPEDATASPTPTPTQPVTSRPTPSNPSPTTTSTAPANSGFNWFWPTEGAVVSNFVAGQTTKQGVSINGNNG
QTIRAAANGTVVYSGSALIGYGELIIIKHNEQWISAYGHNRKRLVNEGQTVKANQPIAEMGRMLYFEIRYNGKPVDPLVY
LPKK

Specific function: Unknown

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell inner membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87082174, Length=252, Percent_Identity=37.6984126984127, Blast_Score=145, Evalue=2e-36,
Organism=Escherichia coli, GI87082297, Length=147, Percent_Identity=31.2925170068027, Blast_Score=74, Evalue=6e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 26293; Mature: 26293

Theoretical pI: Translated: 10.38; Mature: 10.38

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MERSMEISKLLLSTALALALTACSTATAVRPNNTSNPRTTAKSNQTVVVKQGDTLYAISR
CCCCHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCEECCCCCEEEEECCCEEEEEEC
RTGVAPQDLAAWNRLTASKTIYPGQVLRLYPEDATASPTPTPTQPVTSRPTPSNPSPTTT
CCCCCHHHHHHHHHHCCCCEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
STAPANSGFNWFWPTEGAVVSNFVAGQTTKQGVSINGNNGQTIRAAANGTVVYSGSALIG
CCCCCCCCCEEECCCCCHHHHHHHCCCCCCCCEEEECCCCCEEEEECCCEEEEECCEEEE
YGELIIIKHNEQWISAYGHNRKRLVNEGQTVKANQPIAEMGRMLYFEIRYNGKPVDPLVY
CCEEEEEECCCHHHHHCCCCCHHHHCCCCEEECCCCHHHCCCEEEEEEEECCCCCCCEEE
LPKK
CCCC
>Mature Secondary Structure
MERSMEISKLLLSTALALALTACSTATAVRPNNTSNPRTTAKSNQTVVVKQGDTLYAISR
CCCCHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCEECCCCCEEEEECCCEEEEEEC
RTGVAPQDLAAWNRLTASKTIYPGQVLRLYPEDATASPTPTPTQPVTSRPTPSNPSPTTT
CCCCCHHHHHHHHHHCCCCEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
STAPANSGFNWFWPTEGAVVSNFVAGQTTKQGVSINGNNGQTIRAAANGTVVYSGSALIG
CCCCCCCCCEEECCCCCHHHHHHHCCCCCCCCEEEECCCCCEEEEECCCEEEEECCEEEE
YGELIIIKHNEQWISAYGHNRKRLVNEGQTVKANQPIAEMGRMLYFEIRYNGKPVDPLVY
CCEEEEEECCCHHHHHCCCCCHHHHCCCCEEECCCCHHHCCCEEEEEEEECCCCCCCEEE
LPKK
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7959068; 10984043 [H]