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The map label for this gene is ybeY [C]

Identifier: 182682398

GI number: 182682398

Start: 2088662

End: 2089147

Strand: Direct

Name: ybeY [C]

Synonym: XfasM23_1884

Alternate gene names: 182682398

Gene position: 2088662-2089147 (Clockwise)

Preceding gene: 182682397

Following gene: 182682399

Centisome position: 82.37

GC content: 55.56

Gene sequence:

>486_bases
ATGACACGCGGCCCGATTTTTCTCAATGTTGGCATCAGCTATGGCCTGCCCCGGACCAAACTTCCCGCCGCCGTAAGCTT
CCGCAAATGGGTTGCCGCAACACTGCAAGGACGTATCCGCAAAGCCGACCTAGCGATTCGTATCGTCGACGAAAAAGAAG
GCCGCGCACTTAACTACCACTATCGCAACAAAGACTACGCCACCAACGTCCTTAGCTTCCCCGCTCAACTTCCCGAACCC
TTTCCTAAAGCCCTGAAAATCCCCCTACTCGGCGACATCGTGATGTGCGCCCCAGTGATCGCACGCGAAGCCACAGAACA
AGGCAAATCACTCTCTGCACACTACGCCCACCTCACCGTACACGGCACCCTACATCTACTCGGCTGGAACCACGAAGACC
ATCAAGAAGCCGATGCCATGGAACAACTTGAACGCGAGATCCTAGCCAATCTCGGCATCAGCGACCCCTACCTCGGAGAA
TACTGA

Upstream 100 bases:

>100_bases
ACACATCCCAGCACCACCAAACCAGCATGACCCCCGCTTCCGCTGCATCCAACCACATCATGCGGCACCACCTCCCACAT
TCCGACACAAAAACAGCGCC

Downstream 100 bases:

>100_bases
TGCGTGCCTCCCTAACCGCCCTACTTACGACACTGCCGACACTCATCTGCTTGGCTACCGAACACCCCCATCTCACACCT
CCCGACTTGGAAGCACTGAT

Product: putative metalloprotease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 161; Mature: 160

Protein sequence:

>161_residues
MTRGPIFLNVGISYGLPRTKLPAAVSFRKWVAATLQGRIRKADLAIRIVDEKEGRALNYHYRNKDYATNVLSFPAQLPEP
FPKALKIPLLGDIVMCAPVIAREATEQGKSLSAHYAHLTVHGTLHLLGWNHEDHQEADAMEQLEREILANLGISDPYLGE
Y

Sequences:

>Translated_161_residues
MTRGPIFLNVGISYGLPRTKLPAAVSFRKWVAATLQGRIRKADLAIRIVDEKEGRALNYHYRNKDYATNVLSFPAQLPEP
FPKALKIPLLGDIVMCAPVIAREATEQGKSLSAHYAHLTVHGTLHLLGWNHEDHQEADAMEQLEREILANLGISDPYLGE
Y
>Mature_160_residues
TRGPIFLNVGISYGLPRTKLPAAVSFRKWVAATLQGRIRKADLAIRIVDEKEGRALNYHYRNKDYATNVLSFPAQLPEPF
PKALKIPLLGDIVMCAPVIAREATEQGKSLSAHYAHLTVHGTLHLLGWNHEDHQEADAMEQLEREILANLGISDPYLGEY

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family

Homologues:

Organism=Escherichia coli, GI1786880, Length=143, Percent_Identity=45.4545454545455, Blast_Score=125, Evalue=9e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRMF_XYLF2 (B2I8U3)

Other databases:

- EMBL:   CP001011
- RefSeq:   YP_001830558.1
- ProteinModelPortal:   B2I8U3
- SMR:   B2I8U3
- GeneID:   6202721
- GenomeReviews:   CP001011_GR
- KEGG:   xfn:XfasM23_1884
- HOGENOM:   HBG734136
- OMA:   FTDPYKE
- ProtClustDB:   PRK00016
- HAMAP:   MF_00009
- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036
- Gene3D:   G3DSA:3.40.390.30
- TIGRFAMs:   TIGR00043

Pfam domain/function: PF02130 UPF0054

EC number: NA

Molecular weight: Translated: 18013; Mature: 17882

Theoretical pI: Translated: 7.79; Mature: 7.79

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRGPIFLNVGISYGLPRTKLPAAVSFRKWVAATLQGRIRKADLAIRIVDEKEGRALNYH
CCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCEEEEE
YRNKDYATNVLSFPAQLPEPFPKALKIPLLGDIVMCAPVIAREATEQGKSLSAHYAHLTV
ECCCCHHHHHHHCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEE
HGTLHLLGWNHEDHQEADAMEQLEREILANLGISDPYLGEY
EEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
TRGPIFLNVGISYGLPRTKLPAAVSFRKWVAATLQGRIRKADLAIRIVDEKEGRALNYH
CCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCEEEEE
YRNKDYATNVLSFPAQLPEPFPKALKIPLLGDIVMCAPVIAREATEQGKSLSAHYAHLTV
ECCCCHHHHHHHCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEE
HGTLHLLGWNHEDHQEADAMEQLEREILANLGISDPYLGEY
EEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA