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The map label for this gene is yiaD [H]

Identifier: 182682310

GI number: 182682310

Start: 1993783

End: 1994508

Strand: Reverse

Name: yiaD [H]

Synonym: XfasM23_1793

Alternate gene names: 182682310

Gene position: 1994508-1993783 (Counterclockwise)

Preceding gene: 182682311

Following gene: 182682308

Centisome position: 78.66

GC content: 52.2

Gene sequence:

>726_bases
ATGATGATGCGAGCGGCCCTTAAGCCTATGTGTACAGTTCTGGCGGTGGCGCTGGTGCTGTCCGGTTGTGCTACAGGTGG
ATCTTATGTGCAGCGTGACCAGTCTGGTAATTCCACAGAGCAGCGAAACCGGACCGGGCGGGATGCGGCCATTGGTGCGG
CCATTGGCGCTGCTGCGGGTTTGTTGACTGGTAAAAATGCCACCAAGCGGAGACAGCGCGCGATGATTGCTGCTGGTATC
GGTGCACTTGGCGGGGCAGCGATTGGTAATTACCAGGATCGTCAAGAACGCGCTTTGCGTGAGCGCACGGCCAATACTGG
CATTGATGTCAAGCGTGACGGTGACAATATCACTCTCAATTTGCCGGACGGTATTACTTTCGATTTTGGTAAGTCGATGC
TCAAGCCGCAATTTTATGGCGCACTTAAAAATGTCGCTTCGACGTTGCGCGAGTATAACCAGACGATGATTGAGGTGGTT
GGTTATACCGATAGTATTGGCAGTGATGTGGTGAATCAGCGCTTGTCTGAGGATCGTGCTGGTGCGGTTGCTAGTTATTT
AGCGGCACAAGGTGTGCAGCGTGAACGTATGGAAATCTCGGGGATGGGAAAACGTTACCCGATTGCCGATAACAGTACAG
AAGCTGGGCGTAGTAAGAACCGGCGTGTTGAAATACATTTGATTCCATTCAGTGCTGAAAATAGCGGTGCCACAGGCATG
CATTGA

Upstream 100 bases:

>100_bases
TTGTAGTCTGATTGTTGTCCAGGTTTCCATCACCCAGTTGATGTATCTCTGCGTTTATCTTAACTATTGGTGTGCCGGAT
GTGCCGGCGAAGGAGTAATG

Downstream 100 bases:

>100_bases
GTCTGTATTAACTGCTTGTACGCTGTATGTTGCTTGTGAAGCGCGCTTTTTGAGTATTTATCTGCCGTAGTTTGGATTTC
CTCTGGATTTGTTTGTTGTT

Product: OmpA/MotB domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 241; Mature: 241

Protein sequence:

>241_residues
MMMRAALKPMCTVLAVALVLSGCATGGSYVQRDQSGNSTEQRNRTGRDAAIGAAIGAAAGLLTGKNATKRRQRAMIAAGI
GALGGAAIGNYQDRQERALRERTANTGIDVKRDGDNITLNLPDGITFDFGKSMLKPQFYGALKNVASTLREYNQTMIEVV
GYTDSIGSDVVNQRLSEDRAGAVASYLAAQGVQRERMEISGMGKRYPIADNSTEAGRSKNRRVEIHLIPFSAENSGATGM
H

Sequences:

>Translated_241_residues
MMMRAALKPMCTVLAVALVLSGCATGGSYVQRDQSGNSTEQRNRTGRDAAIGAAIGAAAGLLTGKNATKRRQRAMIAAGI
GALGGAAIGNYQDRQERALRERTANTGIDVKRDGDNITLNLPDGITFDFGKSMLKPQFYGALKNVASTLREYNQTMIEVV
GYTDSIGSDVVNQRLSEDRAGAVASYLAAQGVQRERMEISGMGKRYPIADNSTEAGRSKNRRVEIHLIPFSAENSGATGM
H
>Mature_241_residues
MMMRAALKPMCTVLAVALVLSGCATGGSYVQRDQSGNSTEQRNRTGRDAAIGAAIGAAAGLLTGKNATKRRQRAMIAAGI
GALGGAAIGNYQDRQERALRERTANTGIDVKRDGDNITLNLPDGITFDFGKSMLKPQFYGALKNVASTLREYNQTMIEVV
GYTDSIGSDVVNQRLSEDRAGAVASYLAAQGVQRERMEISGMGKRYPIADNSTEAGRSKNRRVEIHLIPFSAENSGATGM
H

Specific function: Unknown

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential). Cell inner membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=231, Percent_Identity=39.8268398268398, Blast_Score=143, Evalue=1e-35,
Organism=Escherichia coli, GI1787191, Length=120, Percent_Identity=34.1666666666667, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1788957, Length=111, Percent_Identity=36.036036036036, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 25689; Mature: 25689

Theoretical pI: Translated: 10.10; Mature: 10.10

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS01068 OMPA_1 ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMMRAALKPMCTVLAVALVLSGCATGGSYVQRDQSGNSTEQRNRTGRDAAIGAAIGAAAG
CCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCHHHHHCCCCHHHHHHHHHHHHH
LLTGKNATKRRQRAMIAAGIGALGGAAIGNYQDRQERALRERTANTGIDVKRDGDNITLN
HHCCCCHHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHCCCCCEEEECCCEEEEE
LPDGITFDFGKSMLKPQFYGALKNVASTLREYNQTMIEVVGYTDSIGSDVVNQRLSEDRA
CCCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
GAVASYLAAQGVQRERMEISGMGKRYPIADNSTEAGRSKNRRVEIHLIPFSAENSGATGM
HHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCC
H
C
>Mature Secondary Structure
MMMRAALKPMCTVLAVALVLSGCATGGSYVQRDQSGNSTEQRNRTGRDAAIGAAIGAAAG
CCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCHHHHHCCCCHHHHHHHHHHHHH
LLTGKNATKRRQRAMIAAGIGALGGAAIGNYQDRQERALRERTANTGIDVKRDGDNITLN
HHCCCCHHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHCCCCCEEEECCCEEEEE
LPDGITFDFGKSMLKPQFYGALKNVASTLREYNQTMIEVVGYTDSIGSDVVNQRLSEDRA
CCCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
GAVASYLAAQGVQRERMEISGMGKRYPIADNSTEAGRSKNRRVEIHLIPFSAENSGATGM
HHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCC
H
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503; 2180922 [H]