Definition | Xylella fastidiosa M23 chromosome, complete genome. |
---|---|
Accession | NC_010577 |
Length | 2,535,690 |
Click here to switch to the map view.
The map label for this gene is yghZ [H]
Identifier: 182682308
GI number: 182682308
Start: 1990178
End: 1991143
Strand: Reverse
Name: yghZ [H]
Synonym: XfasM23_1791
Alternate gene names: 182682308
Gene position: 1991143-1990178 (Counterclockwise)
Preceding gene: 182682310
Following gene: 182682306
Centisome position: 78.52
GC content: 53.21
Gene sequence:
>966_bases ATGCATTATCGTCGTCTTGGTTCTACTGGGTTGCAGTTATCAGTCCTTTCTTTCGGTACTTGGGTGACTTTTGGCAATCA GGTTGCGCGCGATGAGGCTCGTAATTTAGTGGCTTGTGCTTGGGATCACGGCGTGAATTTCTTTGATGGTGCTGAGACCT ATGCTCAAGGGCGTGCGGAGCAGGTGTTGGGGGATGTGATTGCCGACTTGCGTTTGCCACGTGATGGTTATTGTGTATCC AGTAAGGTGTTCTTTGGGGCTGTGAATGAGCCACGTCCGACGCAGTGCGGGCTTTCACGCAAGCATGTCCATGATGCTTG CCATGCTGCATTGAAGCGTTTGCGAGTGGACTATTTGGACCTTTTTTTCTGTCATCGTCCTGATGCTGATACTCCGATTG AGGAGACGGTACGTGCGATGACTACGCTGATTCGGCAGGGCAAGGTGCTTTACTGGGGCACTTCGGAGTGGTCAGCTGCA CAGATTGCCGAAGCAATTGCAATTGCCTCGCGTGAGCATCTTGAGCGTCCGTGGGTAGAGCAGCCTCAGTACAACTTGCT ACACCGTGAGCGTGTAGAGCGGGAGTATGTATCGCTCTATGCTCAGGGTTTGGGCACGACGATCTGGTCGCCTTTGGCAT CGGGGTTGCTGACTGGAAAACACAATGTGGGTGTGGCATCGGGCAGCCGTTTGGTGCAGCCAGGTTACGAGTGGTTACAG AGGCAGGTGTTGGGTGAGGGTGAGGCGCGTTTGGTACAAGCGCGGCGCTTTAGTGAGGTTGCTGCTGATCTTGGCCAGTT GCCGACGCAATTGGCGATTGCTTGGTGTTTACGTAATCCACATGTCTCTACGGTGATTCTCGGTGCGAGTCGGGTTGCTC AATTGAAAGAAAATCTTCAGGCATTGCAGGTGGTTGCAGCGTTGGATGCTGCTGCTTGGCGATGTGTTGAGGCTGCAATG GAATGA
Upstream 100 bases:
>100_bases GACGATATCTACTTATTAGTAGTGCTGTGTGTTGTTGTTTTCTTTTGTTGTTGCATGGGTTGTTTCTTTATTCTCGCGTC CTTTTAGGGAGTGGAGTTTT
Downstream 100 bases:
>100_bases GTGATCCGAACCTGATGGAGTTGTGGTGCATGTCGGTATTGGGAGGTTGACTGTGTATTCCTTGGTTGGGATGTTTCATT CATATCGGTATTGCTGAAGT
Product: aldo/keto reductase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 321; Mature: 321
Protein sequence:
>321_residues MHYRRLGSTGLQLSVLSFGTWVTFGNQVARDEARNLVACAWDHGVNFFDGAETYAQGRAEQVLGDVIADLRLPRDGYCVS SKVFFGAVNEPRPTQCGLSRKHVHDACHAALKRLRVDYLDLFFCHRPDADTPIEETVRAMTTLIRQGKVLYWGTSEWSAA QIAEAIAIASREHLERPWVEQPQYNLLHRERVEREYVSLYAQGLGTTIWSPLASGLLTGKHNVGVASGSRLVQPGYEWLQ RQVLGEGEARLVQARRFSEVAADLGQLPTQLAIAWCLRNPHVSTVILGASRVAQLKENLQALQVVAALDAAAWRCVEAAM E
Sequences:
>Translated_321_residues MHYRRLGSTGLQLSVLSFGTWVTFGNQVARDEARNLVACAWDHGVNFFDGAETYAQGRAEQVLGDVIADLRLPRDGYCVS SKVFFGAVNEPRPTQCGLSRKHVHDACHAALKRLRVDYLDLFFCHRPDADTPIEETVRAMTTLIRQGKVLYWGTSEWSAA QIAEAIAIASREHLERPWVEQPQYNLLHRERVEREYVSLYAQGLGTTIWSPLASGLLTGKHNVGVASGSRLVQPGYEWLQ RQVLGEGEARLVQARRFSEVAADLGQLPTQLAIAWCLRNPHVSTVILGASRVAQLKENLQALQVVAALDAAAWRCVEAAM E >Mature_321_residues MHYRRLGSTGLQLSVLSFGTWVTFGNQVARDEARNLVACAWDHGVNFFDGAETYAQGRAEQVLGDVIADLRLPRDGYCVS SKVFFGAVNEPRPTQCGLSRKHVHDACHAALKRLRVDYLDLFFCHRPDADTPIEETVRAMTTLIRQGKVLYWGTSEWSAA QIAEAIAIASREHLERPWVEQPQYNLLHRERVEREYVSLYAQGLGTTIWSPLASGLLTGKHNVGVASGSRLVQPGYEWLQ RQVLGEGEARLVQARRFSEVAADLGQLPTQLAIAWCLRNPHVSTVILGASRVAQLKENLQALQVVAALDAAAWRCVEAAM E
Specific function: Unknown
COG id: COG0667
COG function: function code C; Predicted oxidoreductases (related to aryl-alcohol dehydrogenases)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI27436969, Length=314, Percent_Identity=45.5414012738853, Blast_Score=282, Evalue=2e-76, Organism=Homo sapiens, GI4504825, Length=312, Percent_Identity=45.5128205128205, Blast_Score=280, Evalue=9e-76, Organism=Homo sapiens, GI27436964, Length=312, Percent_Identity=43.5897435897436, Blast_Score=270, Evalue=1e-72, Organism=Homo sapiens, GI27436962, Length=312, Percent_Identity=43.5897435897436, Blast_Score=270, Evalue=2e-72, Organism=Homo sapiens, GI27436966, Length=312, Percent_Identity=43.2692307692308, Blast_Score=268, Evalue=7e-72, Organism=Homo sapiens, GI27436971, Length=310, Percent_Identity=44.1935483870968, Blast_Score=262, Evalue=3e-70, Organism=Homo sapiens, GI41152114, Length=279, Percent_Identity=29.0322580645161, Blast_Score=83, Evalue=4e-16, Organism=Homo sapiens, GI223718702, Length=275, Percent_Identity=29.0909090909091, Blast_Score=82, Evalue=5e-16, Organism=Homo sapiens, GI41327764, Length=221, Percent_Identity=29.8642533936652, Blast_Score=78, Evalue=1e-14, Organism=Escherichia coli, GI1789375, Length=315, Percent_Identity=35.8730158730159, Blast_Score=173, Evalue=1e-44, Organism=Escherichia coli, GI87081735, Length=315, Percent_Identity=33.6507936507937, Blast_Score=154, Evalue=6e-39, Organism=Escherichia coli, GI1789199, Length=341, Percent_Identity=30.4985337243402, Blast_Score=118, Evalue=6e-28, Organism=Escherichia coli, GI1788070, Length=340, Percent_Identity=27.6470588235294, Blast_Score=99, Evalue=4e-22, Organism=Escherichia coli, GI1788081, Length=157, Percent_Identity=34.3949044585987, Blast_Score=75, Evalue=4e-15, Organism=Saccharomyces cerevisiae, GI6325169, Length=324, Percent_Identity=28.7037037037037, Blast_Score=113, Evalue=5e-26, Organism=Saccharomyces cerevisiae, GI6323998, Length=316, Percent_Identity=24.0506329113924, Blast_Score=85, Evalue=1e-17, Organism=Saccharomyces cerevisiae, GI6319958, Length=288, Percent_Identity=23.2638888888889, Blast_Score=77, Evalue=3e-15, Organism=Saccharomyces cerevisiae, GI6319951, Length=300, Percent_Identity=23.3333333333333, Blast_Score=77, Evalue=3e-15, Organism=Saccharomyces cerevisiae, GI6322615, Length=225, Percent_Identity=24.4444444444444, Blast_Score=68, Evalue=2e-12, Organism=Drosophila melanogaster, GI24640980, Length=345, Percent_Identity=30.4347826086957, Blast_Score=174, Evalue=9e-44, Organism=Drosophila melanogaster, GI45549126, Length=345, Percent_Identity=30.4347826086957, Blast_Score=174, Evalue=1e-43, Organism=Drosophila melanogaster, GI24646155, Length=312, Percent_Identity=28.8461538461538, Blast_Score=92, Evalue=3e-19, Organism=Drosophila melanogaster, GI24646159, Length=172, Percent_Identity=28.4883720930233, Blast_Score=74, Evalue=1e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001395 - InterPro: IPR005399 - InterPro: IPR023210 [H]
Pfam domain/function: PF00248 Aldo_ket_red [H]
EC number: NA
Molecular weight: Translated: 35689; Mature: 35689
Theoretical pI: Translated: 7.28; Mature: 7.28
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHYRRLGSTGLQLSVLSFGTWVTFGNQVARDEARNLVACAWDHGVNFFDGAETYAQGRAE CCCCCCCCCCCEEEHHHHHHHHHHCHHHHHHHHCCEEEEEECCCCCCCCCHHHHHCCHHH QVLGDVIADLRLPRDGYCVSSKVFFGAVNEPRPTQCGLSRKHVHDACHAALKRLRVDYLD HHHHHHHHHHCCCCCCCEEECEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH LFFCHRPDADTPIEETVRAMTTLIRQGKVLYWGTSEWSAAQIAEAIAIASREHLERPWVE HHHCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCC QPQYNLLHRERVEREYVSLYAQGLGTTIWSPLASGLLTGKHNVGVASGSRLVQPGYEWLQ CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHH RQVLGEGEARLVQARRFSEVAADLGQLPTQLAIAWCLRNPHVSTVILGASRVAQLKENLQ HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHH ALQVVAALDAAAWRCVEAAME HHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MHYRRLGSTGLQLSVLSFGTWVTFGNQVARDEARNLVACAWDHGVNFFDGAETYAQGRAE CCCCCCCCCCCEEEHHHHHHHHHHCHHHHHHHHCCEEEEEECCCCCCCCCHHHHHCCHHH QVLGDVIADLRLPRDGYCVSSKVFFGAVNEPRPTQCGLSRKHVHDACHAALKRLRVDYLD HHHHHHHHHHCCCCCCCEEECEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH LFFCHRPDADTPIEETVRAMTTLIRQGKVLYWGTSEWSAAQIAEAIAIASREHLERPWVE HHHCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCC QPQYNLLHRERVEREYVSLYAQGLGTTIWSPLASGLLTGKHNVGVASGSRLVQPGYEWLQ CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHH RQVLGEGEARLVQARRFSEVAADLGQLPTQLAIAWCLRNPHVSTVILGASRVAQLKENLQ HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHH ALQVVAALDAAAWRCVEAAME HHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]