Definition | Xylella fastidiosa M23 chromosome, complete genome. |
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Accession | NC_010577 |
Length | 2,535,690 |
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The map label for this gene is 182682306
Identifier: 182682306
GI number: 182682306
Start: 1986147
End: 1987205
Strand: Reverse
Name: 182682306
Synonym: XfasM23_1789
Alternate gene names: NA
Gene position: 1987205-1986147 (Counterclockwise)
Preceding gene: 182682308
Following gene: 182682305
Centisome position: 78.37
GC content: 51.37
Gene sequence:
>1059_bases GTGGGGCTTTTTTCAAAAAAACAGTCGGTATTGGTTGGTGTCGACATTAGTTCAACTGCAGTGAAGCTCTTACAGCTTTC CCGCAGTGGTAATCGCTTCAAGGTGGAACACTATGCTGTGGAGCCGCTACCTCTGAATGCGGTCGCTGAGAAGGGCATCG TTGAAGTCGAGCAGGTTGGTGAAGCAATCCGTCGTGCGGTAAGTCGTTCTGGAACTAAGGCCAAATTTGCCGCTGCCGCG GTTGCCGGTTCGGCAGTGATCACCAAATTGATACCGATGCCTGCTGGTCTGGACGAGCAGGATTTGGAAGCTCAGATAGA AATCGAGGCTACGAATTACATCCCGTACCCTATTGAAGAGGTCAGCCTAGATTTCGAGGTGCTTGGTCCGGTTCCCAACA ACACGGAGATGGTCCAAGTTTTGCTGGCTGCGTCTCGTTCGGAGAATGTCGAATTGCGCCAATCTGCGTTGGAGCTGGGG GGGTTGACTGCCAAGGTTATTGACGTGGAAGCTTTAGCGGTTGAGAACGCTTTCTCTCTTATTGCCCAAGAACTGTCGGT TGGGAGTAATGCATTGGTTGCATTGATCGACATCGGTGCAACGATGTCGACGCTTAATGTGCTGCATAGTGGTCGCAGTT TGTACGCGCGCGAGCAGCTATTTGGTGGTAAGCAGCTTACTGACGAAGTAATGCATCGCTATGGGATGACTTACGAGGAG GCTGGTCAGGCCAAGCGTCAAGGAGGTTTGCCGCAAAGCTATGAGGTTGAAGTGCTGGGACCATTTAAGGACTCTGTGAT CCAGCAGATCAGCCGTTTATTACAGTTTTTCTATGCTGGCAGTGAGTACAACCGAGTTGATTGCATCGTGTTGGCGGGAG GCTGTGCTGTGATTGCGGGGTTACCGGCTATGGTCGAAGAACGGTTGGGTGTCGTTACCGTTGTGGCTAATCCGCTTGCG CAGATGACTTTAGGGGCGAAAGTGCAAGCACACACGCTTGCTCAAGATGCACCTGCTTTAATGATTGCTACTGGTCTGGC TTTGAGGAGTTTTGACTGA
Upstream 100 bases:
>100_bases AGCTATTGTGTGCCGCAGTTTTATATTTGAATTTAAGGTACCTGGGCGTGGAAACAGATATGTTCCTGTCTTAAAAGTGC CCGTGGTCAGGGGAGTTTTC
Downstream 100 bases:
>100_bases TGGCCAGAATTAACTTATTGCCCTGGCGCGTTGAGCGCCGCAAGCAGCGTGAGCGTGAGTTTTATGTGATGCTTGGTTTT TCCACATTGGTGGGTATCCT
Product: type IV pilus assembly protein PilM
Products: NA
Alternate protein names: Type IV Pilus Biogenesis Protein PilM; Type 4 Fimbrial Biogenesis Protein PilM; Tfp Pilus Assembly Protein ATPase PilM; Type Iv Pilus Assembly Protein Pilm; Fimbrial Assembly Membrane Protein; Type IV Pili Biogenesis Protein PilM; Tfp Pilus Assembly Protein; Fimbrial Assembly Protein PilM; Type IV Pilus Assembly Protein; Protein FtsA; Tfp Pilus Assembly Protein ATPase PilM-Like Protein; Response Regulator Receiver Domain Protein; Response Regulator Receiver Domain-Containing Protein; Type IV Fimbrial Biogenesis Protein PilM; PilM Type IV Pilus Assembly Protein; Fimbrial Assembly Protein; Type IV Pilus Biogenesis Protein TapM; Type 4 Fimbrial Biogenesis Protein; Pili Assembly Protein; Competence Protein PilM; Type IV Pilus Biogenesis ATPase PilM
Number of amino acids: Translated: 352; Mature: 351
Protein sequence:
>352_residues MGLFSKKQSVLVGVDISSTAVKLLQLSRSGNRFKVEHYAVEPLPLNAVAEKGIVEVEQVGEAIRRAVSRSGTKAKFAAAA VAGSAVITKLIPMPAGLDEQDLEAQIEIEATNYIPYPIEEVSLDFEVLGPVPNNTEMVQVLLAASRSENVELRQSALELG GLTAKVIDVEALAVENAFSLIAQELSVGSNALVALIDIGATMSTLNVLHSGRSLYAREQLFGGKQLTDEVMHRYGMTYEE AGQAKRQGGLPQSYEVEVLGPFKDSVIQQISRLLQFFYAGSEYNRVDCIVLAGGCAVIAGLPAMVEERLGVVTVVANPLA QMTLGAKVQAHTLAQDAPALMIATGLALRSFD
Sequences:
>Translated_352_residues MGLFSKKQSVLVGVDISSTAVKLLQLSRSGNRFKVEHYAVEPLPLNAVAEKGIVEVEQVGEAIRRAVSRSGTKAKFAAAA VAGSAVITKLIPMPAGLDEQDLEAQIEIEATNYIPYPIEEVSLDFEVLGPVPNNTEMVQVLLAASRSENVELRQSALELG GLTAKVIDVEALAVENAFSLIAQELSVGSNALVALIDIGATMSTLNVLHSGRSLYAREQLFGGKQLTDEVMHRYGMTYEE AGQAKRQGGLPQSYEVEVLGPFKDSVIQQISRLLQFFYAGSEYNRVDCIVLAGGCAVIAGLPAMVEERLGVVTVVANPLA QMTLGAKVQAHTLAQDAPALMIATGLALRSFD >Mature_351_residues GLFSKKQSVLVGVDISSTAVKLLQLSRSGNRFKVEHYAVEPLPLNAVAEKGIVEVEQVGEAIRRAVSRSGTKAKFAAAAV AGSAVITKLIPMPAGLDEQDLEAQIEIEATNYIPYPIEEVSLDFEVLGPVPNNTEMVQVLLAASRSENVELRQSALELGG LTAKVIDVEALAVENAFSLIAQELSVGSNALVALIDIGATMSTLNVLHSGRSLYAREQLFGGKQLTDEVMHRYGMTYEEA GQAKRQGGLPQSYEVEVLGPFKDSVIQQISRLLQFFYAGSEYNRVDCIVLAGGCAVIAGLPAMVEERLGVVTVVANPLAQ MTLGAKVQAHTLAQDAPALMIATGLALRSFD
Specific function: Unknown
COG id: COG4972
COG function: function code NU; Tfp pilus assembly protein, ATPase PilM
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37540; Mature: 37408
Theoretical pI: Translated: 4.65; Mature: 4.65
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGLFSKKQSVLVGVDISSTAVKLLQLSRSGNRFKVEHYAVEPLPLNAVAEKGIVEVEQVG CCCCCCCCCEEEEECCHHHHHHHHHHHCCCCEEEEEEEEECCCCCHHHHHCCCHHHHHHH EAIRRAVSRSGTKAKFAAAAVAGSAVITKLIPMPAGLDEQDLEAQIEIEATNYIPYPIEE HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCCHHH VSLDFEVLGPVPNNTEMVQVLLAASRSENVELRQSALELGGLTAKVIDVEALAVENAFSL HCCCEEEECCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHH IAQELSVGSNALVALIDIGATMSTLNVLHSGRSLYAREQLFGGKQLTDEVMHRYGMTYEE HHHHHHCCCCCEEEEEECCCHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHCCCHHH AGQAKRQGGLPQSYEVEVLGPFKDSVIQQISRLLQFFYAGSEYNRVDCIVLAGGCAVIAG HHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHC LPAMVEERLGVVTVVANPLAQMTLGAKVQAHTLAQDAPALMIATGLALRSFD CHHHHHHHCCEEEEECCHHHHHHHCCCHHHHHHHCCCCEEEEECCCHHCCCC >Mature Secondary Structure GLFSKKQSVLVGVDISSTAVKLLQLSRSGNRFKVEHYAVEPLPLNAVAEKGIVEVEQVG CCCCCCCCEEEEECCHHHHHHHHHHHCCCCEEEEEEEEECCCCCHHHHHCCCHHHHHHH EAIRRAVSRSGTKAKFAAAAVAGSAVITKLIPMPAGLDEQDLEAQIEIEATNYIPYPIEE HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCCHHH VSLDFEVLGPVPNNTEMVQVLLAASRSENVELRQSALELGGLTAKVIDVEALAVENAFSL HCCCEEEECCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHH IAQELSVGSNALVALIDIGATMSTLNVLHSGRSLYAREQLFGGKQLTDEVMHRYGMTYEE HHHHHHCCCCCEEEEEECCCHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHCCCHHH AGQAKRQGGLPQSYEVEVLGPFKDSVIQQISRLLQFFYAGSEYNRVDCIVLAGGCAVIAG HHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHC LPAMVEERLGVVTVVANPLAQMTLGAKVQAHTLAQDAPALMIATGLALRSFD CHHHHHHHCCEEEEECCHHHHHHHCCCHHHHHHHCCCCEEEEECCCHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA