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The map label for this gene is ppdD [C]

Identifier: 182682225

GI number: 182682225

Start: 1884236

End: 1884748

Strand: Reverse

Name: ppdD [C]

Synonym: XfasM23_1707

Alternate gene names: 182682225

Gene position: 1884748-1884236 (Counterclockwise)

Preceding gene: 182682226

Following gene: 182682224

Centisome position: 74.33

GC content: 53.8

Gene sequence:

>513_bases
ATGCCAGACGATGTGCGTGGCTTCACGATGATGGAGCTTATGGTCGTTGTTGCTGTCGTTTCTGTCTTGGCGGCGATGGC
ATTTCCCAATTTTCGTCATGTGATTCGCTCGAATCGAGTGTCATCTAGGACCGATGAACTGATCAGTTCTATCGCTTTGG
CCCGCAGTGAGGCGGTGTCCAGCACACATGGCGGCGGTATTTGTCCAAGTGCCAATGGTGATGCTTGCGATGGTCAATGG
AGTCAGGGATGGTTGATTTGGAGTGATGCCAACGGGAATGGCATCTTCGACAAGGGTGAAGCAGTGTTGCGTTACATTCA
GGGCAGTCCCCAGTTGTTCGTGTCAGTGAAGGATCCCTTACCTATTGTTTTTGATGCGCATGGCTTACGGCGTGCATCGA
ACGATCAAGTGGTGACGCTCCGTCCGGATAACTGCGGCGGCCAGCCATTACAGCGTACCGTCACGATCACCGCTACGGGT
CTGGCGAAGGTGGAGAAGGGCGCGTGTCAATGA

Upstream 100 bases:

>100_bases
TAACGCTGACCGTTTGTCAGACAGTGTTTGCGCTGCACTGTACTGACAGTGTCTGCTTTGGAGTTCCATCCCTTAGACAT
TAACGCTGTGGAGCGTTTAG

Downstream 100 bases:

>100_bases
AAAAGTGTTCCAATCATCGTTGCCATTGGGCTGCGCCTCCCCTTGGGGTGTCGTTGATTGAGGTGTTGATCGCGTTGCTG
GTTCTGGGTATCGGTTTGTT

Product: putative type IV pilus assembly protein FimT

Products: NA

Alternate protein names: Pre-Pilin Like Leader Sequence; Fimbrial Protein FimT; Fimbrial Pilin Related Signal Peptide Protein; Type 4 Fimbrial Biogenesis Protein FimU; Tfp Pilus Assembly Protein FimT-Like Protein

Number of amino acids: Translated: 170; Mature: 169

Protein sequence:

>170_residues
MPDDVRGFTMMELMVVVAVVSVLAAMAFPNFRHVIRSNRVSSRTDELISSIALARSEAVSSTHGGGICPSANGDACDGQW
SQGWLIWSDANGNGIFDKGEAVLRYIQGSPQLFVSVKDPLPIVFDAHGLRRASNDQVVTLRPDNCGGQPLQRTVTITATG
LAKVEKGACQ

Sequences:

>Translated_170_residues
MPDDVRGFTMMELMVVVAVVSVLAAMAFPNFRHVIRSNRVSSRTDELISSIALARSEAVSSTHGGGICPSANGDACDGQW
SQGWLIWSDANGNGIFDKGEAVLRYIQGSPQLFVSVKDPLPIVFDAHGLRRASNDQVVTLRPDNCGGQPLQRTVTITATG
LAKVEKGACQ
>Mature_169_residues
PDDVRGFTMMELMVVVAVVSVLAAMAFPNFRHVIRSNRVSSRTDELISSIALARSEAVSSTHGGGICPSANGDACDGQWS
QGWLIWSDANGNGIFDKGEAVLRYIQGSPQLFVSVKDPLPIVFDAHGLRRASNDQVVTLRPDNCGGQPLQRTVTITATGL
AKVEKGACQ

Specific function: Not Yet Known. [C]

COG id: COG4970

COG function: function code NU; Tfp pilus assembly protein FimT

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 18172; Mature: 18041

Theoretical pI: Translated: 6.76; Mature: 6.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDDVRGFTMMELMVVVAVVSVLAAMAFPNFRHVIRSNRVSSRTDELISSIALARSEAVS
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHC
STHGGGICPSANGDACDGQWSQGWLIWSDANGNGIFDKGEAVLRYIQGSPQLFVSVKDPL
CCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHCCCCEEEEEECCCC
PIVFDAHGLRRASNDQVVTLRPDNCGGQPLQRTVTITATGLAKVEKGACQ
CEEEECCCCCCCCCCCEEEECCCCCCCCCCEEEEEEEECCHHHHCCCCCC
>Mature Secondary Structure 
PDDVRGFTMMELMVVVAVVSVLAAMAFPNFRHVIRSNRVSSRTDELISSIALARSEAVS
CCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHC
STHGGGICPSANGDACDGQWSQGWLIWSDANGNGIFDKGEAVLRYIQGSPQLFVSVKDPL
CCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHCCCCEEEEEECCCC
PIVFDAHGLRRASNDQVVTLRPDNCGGQPLQRTVTITATGLAKVEKGACQ
CEEEECCCCCCCCCCCEEEECCCCCCCCCCEEEEEEEECCHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA