Definition | Xylella fastidiosa M23 chromosome, complete genome. |
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Accession | NC_010577 |
Length | 2,535,690 |
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The map label for this gene is 182682223
Identifier: 182682223
GI number: 182682223
Start: 1882504
End: 1883760
Strand: Reverse
Name: 182682223
Synonym: XfasM23_1705
Alternate gene names: NA
Gene position: 1883760-1882504 (Counterclockwise)
Preceding gene: 182682224
Following gene: 182682222
Centisome position: 74.29
GC content: 50.91
Gene sequence:
>1257_bases ATGACGATGTATTCCTCACGCTTAGCGCGTCTTCGCATCAGTGGACTTTCGTTGATGGAACTGCTGATCGCACTGTTGAT TGGTTCCATACTCATTGTGGGGGTGATCCAGGTATTTCTTGCGTCATGGACTGCTTACCGTCTTTCCCAAGGGATCGCGC GTAATCAGGAAAGCGGTCGTTTCGCACTGGATTTTCTGACACGGGATATCCGCATGGCTGGTCATACCGGATGTATCAAT GATCAAGCGCTGTTGTCTGTTGATGATGGCGGACACCCGAATGGAGGAAATATCCGTTCGTTGTTTCTCAATGCGGATGA TCGCAATACCAACAATGTTTCTAATCAGCCATTCCCGCTGCGTTTCGATATTGCGATTGAGGGATTTGATGCCTCTGGGA CAGGAAGAGGTAGCCTGCTGTCGCTTGGTGCTGTCCCTGTCGTCGGTAGTGCGTCTGATTGGAATCCAGTGTTGCCGGCT GAACTTACGGCTCTGAAACCGATCAAGGGAAGTGATGTTCTGGTACTGCGTTATCTTTCCGCTGAGGAAAACATAGTGAC GGATTTCAATCCAACGTCCAGCCCTACCATCATTTATACAGATGAGTCGGTTCATGGGAGCAGTAAAGTCGCGACCGGTG GTAGTGGCCTGTATGCGATTGCCGATTGTAATGGGGCCAGTGTCTTCCAGGCGAGTACTGCGCCGACGATGACCAGTATG AATGTCAGTGCTGGCGGTCTGAATAAGACGGCGCTTGATTTCGTCGGTTATTACGATCGTTCGCTGTCGTTTTTCCCAGA GAGTTTGGCGTTGTTTCGTGCCGAATCGATTGCTTATTACATTGGTTTGAACGAGCGCGGGATTCCATCACTGTATCGTG CCCGTTGGACTTCGGCGCCTGCGGCGGTTGCCTTGGTTACCAATGTTCAGGAGTTGGTTGAGGGAGTGGAGTCCTTGCAA TTTCTTTATGGTGAAGATTCGGCAGTGTTGAGCAAAACGATATCAAGTGGCTATATCGATCATACGAATCCAGCAAACAT CATCGGTGATGTGGATAACGCGCTGCGTTGGCGTCGGATTGGTACGGTGCAGATCGGGCTGTTGGTGCGTGGTGCTGGGC AAGAACGGGCCAATTCTCTGAATCCGGTAGTGAATCCGACGGTGCTATCTGTACATATCAATCCGCCATCGGATGGTCAA TACCGGGCGGTGTACGAGACAACCGTCGCTTTACGCAATCGCTTATACGGGAACTGA
Upstream 100 bases:
>100_bases CGACGAATGGGGAAGTGACGGTGACGATCCGTTGGGGTGATCAACACTGGGAGACCGATGTGAATAAGCAATCCACCACT TTCAATCTGACTAGTGTGTT
Downstream 100 bases:
>100_bases TGATGAAGTTACGGGCATTTGTCGATTCGCTGCTTCGAGGTCGCGCACGTTCCCAGCAGGGAGCTGTTTTATATGTTGTG CTGGTGGTGTTGGTGCTATT
Product: hypothetical protein
Products: NA
Alternate protein names: PilW-Related Protein; Prepilin-Type Cleavage/Methylation-Like; Type 4 Fimbrial Biogenesis Protein PilW
Number of amino acids: Translated: 418; Mature: 417
Protein sequence:
>418_residues MTMYSSRLARLRISGLSLMELLIALLIGSILIVGVIQVFLASWTAYRLSQGIARNQESGRFALDFLTRDIRMAGHTGCIN DQALLSVDDGGHPNGGNIRSLFLNADDRNTNNVSNQPFPLRFDIAIEGFDASGTGRGSLLSLGAVPVVGSASDWNPVLPA ELTALKPIKGSDVLVLRYLSAEENIVTDFNPTSSPTIIYTDESVHGSSKVATGGSGLYAIADCNGASVFQASTAPTMTSM NVSAGGLNKTALDFVGYYDRSLSFFPESLALFRAESIAYYIGLNERGIPSLYRARWTSAPAAVALVTNVQELVEGVESLQ FLYGEDSAVLSKTISSGYIDHTNPANIIGDVDNALRWRRIGTVQIGLLVRGAGQERANSLNPVVNPTVLSVHINPPSDGQ YRAVYETTVALRNRLYGN
Sequences:
>Translated_418_residues MTMYSSRLARLRISGLSLMELLIALLIGSILIVGVIQVFLASWTAYRLSQGIARNQESGRFALDFLTRDIRMAGHTGCIN DQALLSVDDGGHPNGGNIRSLFLNADDRNTNNVSNQPFPLRFDIAIEGFDASGTGRGSLLSLGAVPVVGSASDWNPVLPA ELTALKPIKGSDVLVLRYLSAEENIVTDFNPTSSPTIIYTDESVHGSSKVATGGSGLYAIADCNGASVFQASTAPTMTSM NVSAGGLNKTALDFVGYYDRSLSFFPESLALFRAESIAYYIGLNERGIPSLYRARWTSAPAAVALVTNVQELVEGVESLQ FLYGEDSAVLSKTISSGYIDHTNPANIIGDVDNALRWRRIGTVQIGLLVRGAGQERANSLNPVVNPTVLSVHINPPSDGQ YRAVYETTVALRNRLYGN >Mature_417_residues TMYSSRLARLRISGLSLMELLIALLIGSILIVGVIQVFLASWTAYRLSQGIARNQESGRFALDFLTRDIRMAGHTGCIND QALLSVDDGGHPNGGNIRSLFLNADDRNTNNVSNQPFPLRFDIAIEGFDASGTGRGSLLSLGAVPVVGSASDWNPVLPAE LTALKPIKGSDVLVLRYLSAEENIVTDFNPTSSPTIIYTDESVHGSSKVATGGSGLYAIADCNGASVFQASTAPTMTSMN VSAGGLNKTALDFVGYYDRSLSFFPESLALFRAESIAYYIGLNERGIPSLYRARWTSAPAAVALVTNVQELVEGVESLQF LYGEDSAVLSKTISSGYIDHTNPANIIGDVDNALRWRRIGTVQIGLLVRGAGQERANSLNPVVNPTVLSVHINPPSDGQY RAVYETTVALRNRLYGN
Specific function: Unknown
COG id: COG4966
COG function: function code NU; Tfp pilus assembly protein PilW
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44829; Mature: 44698
Theoretical pI: Translated: 5.41; Mature: 5.41
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTMYSSRLARLRISGLSLMELLIALLIGSILIVGVIQVFLASWTAYRLSQGIARNQESGR CCCCHHHHHHEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC FALDFLTRDIRMAGHTGCINDQALLSVDDGGHPNGGNIRSLFLNADDRNTNNVSNQPFPL EEEEHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCE RFDIAIEGFDASGTGRGSLLSLGAVPVVGSASDWNPVLPAELTALKPIKGSDVLVLRYLS EEEEEEECCCCCCCCCCCEEEECCEEEECCCCCCCCCCCCHHHEECCCCCCCEEEEEEEC AEENIVTDFNPTSSPTIIYTDESVHGSSKVATGGSGLYAIADCNGASVFQASTAPTMTSM CCCCEEECCCCCCCCEEEEECCCCCCCCCEECCCCCEEEEEECCCCEEEECCCCCCEEEE NVSAGGLNKTALDFVGYYDRSLSFFPESLALFRAESIAYYIGLNERGIPSLYRARWTSAP ECCCCCCCHHHHHHHHHHCCCHHHCHHHHHHHHHCEEEEEEECCCCCCCHHHHHHCCCCC AAVALVTNVQELVEGVESLQFLYGEDSAVLSKTISSGYIDHTNPANIIGDVDNALRWRRI HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCHHCCCCHHHHHEEEC GTVQIGLLVRGAGQERANSLNPVVNPTVLSVHINPPSDGQYRAVYETTVALRNRLYGN CEEEEEEEEECCCHHHHCCCCCCCCCEEEEEEECCCCCCCEEEHHHHHHHHHHHHCCC >Mature Secondary Structure TMYSSRLARLRISGLSLMELLIALLIGSILIVGVIQVFLASWTAYRLSQGIARNQESGR CCCHHHHHHEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC FALDFLTRDIRMAGHTGCINDQALLSVDDGGHPNGGNIRSLFLNADDRNTNNVSNQPFPL EEEEHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCE RFDIAIEGFDASGTGRGSLLSLGAVPVVGSASDWNPVLPAELTALKPIKGSDVLVLRYLS EEEEEEECCCCCCCCCCCEEEECCEEEECCCCCCCCCCCCHHHEECCCCCCCEEEEEEEC AEENIVTDFNPTSSPTIIYTDESVHGSSKVATGGSGLYAIADCNGASVFQASTAPTMTSM CCCCEEECCCCCCCCEEEEECCCCCCCCCEECCCCCEEEEEECCCCEEEECCCCCCEEEE NVSAGGLNKTALDFVGYYDRSLSFFPESLALFRAESIAYYIGLNERGIPSLYRARWTSAP ECCCCCCCHHHHHHHHHHCCCHHHCHHHHHHHHHCEEEEEEECCCCCCCHHHHHHCCCCC AAVALVTNVQELVEGVESLQFLYGEDSAVLSKTISSGYIDHTNPANIIGDVDNALRWRRI HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCHHCCCCHHHHHEEEC GTVQIGLLVRGAGQERANSLNPVVNPTVLSVHINPPSDGQYRAVYETTVALRNRLYGN CEEEEEEEEECCCHHHHCCCCCCCCCEEEEEEECCCCCCCEEEHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA