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The map label for this gene is slyD [H]

Identifier: 182682129

GI number: 182682129

Start: 1781972

End: 1782451

Strand: Direct

Name: slyD [H]

Synonym: XfasM23_1607

Alternate gene names: 182682129

Gene position: 1781972-1782451 (Clockwise)

Preceding gene: 182682126

Following gene: 182682130

Centisome position: 70.28

GC content: 53.54

Gene sequence:

>480_bases
ATGAAGATAGAAAAAGACTGTGTTGTTCGCTTTCACTACATTGTTTCCGAGGTCGGTCAAGCGCCGTTCGAAAGCTCTAA
GGAGCGCAATCCGTTGGCAATCCTTATCGGTCACGGCAACATCATTCCAGGCTTGGAGAAGGCAATGCTGGACAAGCACG
CTGGGGAAAGCTTCAGCGTTGACGTCAAGGCCGCTGATGCCTACGGGGAGTACCGCGAAGGGCTGACACAAAGGATACCG
AAGAAAAAGTTTGGGAATACCCGCGTCACCCCAGGGATGCAGGTGGTGTTGCAAACCAATACCGGAACACAAGCCGTCAC
TGTGCAGAAGGTTGGGCTGACTGTGGTCGATGTCGATTTGAATCACCCGATGGCTGGTAAGGATCTGCATTTTGAGGTGG
AGATCGTTGAGGTGCGCGAGGCGACTCAAGAAGAAATCGAGCACGGCCACGTGCATGGTGAGGGTGGTCACCTGCACTGA

Upstream 100 bases:

>100_bases
ACGTTTCCACCCTCATCACAGTGCGCCCCAGTACGCACCGCCCGTCGACAAGCCATGCTTAACATGGCTGTCACCGTATA
GCCCCATCAACGAGTGAGAT

Downstream 100 bases:

>100_bases
CGCTTGGCCAGCTATCCTGCATGACTGCTCCGTTGCAGAACACTACGTTATCTATGGTGTGTATGTCCTCTGCCACTCCT
CCGCTACTCCCTATTGCCCA

Product: FKBP-type peptidylprolyl isomerase

Products: NA

Alternate protein names: PPIase; Metallochaperone slyD [H]

Number of amino acids: Translated: 159; Mature: 159

Protein sequence:

>159_residues
MKIEKDCVVRFHYIVSEVGQAPFESSKERNPLAILIGHGNIIPGLEKAMLDKHAGESFSVDVKAADAYGEYREGLTQRIP
KKKFGNTRVTPGMQVVLQTNTGTQAVTVQKVGLTVVDVDLNHPMAGKDLHFEVEIVEVREATQEEIEHGHVHGEGGHLH

Sequences:

>Translated_159_residues
MKIEKDCVVRFHYIVSEVGQAPFESSKERNPLAILIGHGNIIPGLEKAMLDKHAGESFSVDVKAADAYGEYREGLTQRIP
KKKFGNTRVTPGMQVVLQTNTGTQAVTVQKVGLTVVDVDLNHPMAGKDLHFEVEIVEVREATQEEIEHGHVHGEGGHLH
>Mature_159_residues
MKIEKDCVVRFHYIVSEVGQAPFESSKERNPLAILIGHGNIIPGLEKAMLDKHAGESFSVDVKAADAYGEYREGLTQRIP
KKKFGNTRVTPGMQVVLQTNTGTQAVTVQKVGLTVVDVDLNHPMAGKDLHFEVEIVEVREATQEEIEHGHVHGEGGHLH

Specific function: Also involved in hydrogenase metallocenter assembly, probably by participating in the nickel insertion step. This function in hydrogenase biosynthesis requires chaperone activity and the presence of the metal-binding domain, but not PPIase activity [H]

COG id: COG1047

COG function: function code O; FKBP-type peptidyl-prolyl cis-trans isomerases 2

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PPIase FKBP-type domain [H]

Homologues:

Organism=Escherichia coli, GI1789748, Length=147, Percent_Identity=42.1768707482993, Blast_Score=103, Evalue=7e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001179 [H]

Pfam domain/function: PF00254 FKBP_C [H]

EC number: =5.2.1.8 [H]

Molecular weight: Translated: 17514; Mature: 17514

Theoretical pI: Translated: 6.34; Mature: 6.34

Prosite motif: PS50059 FKBP_PPIASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIEKDCVVRFHYIVSEVGQAPFESSKERNPLAILIGHGNIIPGLEKAMLDKHAGESFSV
CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHCCCCCEEE
DVKAADAYGEYREGLTQRIPKKKFGNTRVTPGMQVVLQTNTGTQAVTVQKVGLTVVDVDL
EEEECCHHHHHHHHHHHHCCHHHCCCCCCCCCEEEEEEECCCCEEEEEEECCEEEEEEEC
NHPMAGKDLHFEVEIVEVREATQEEIEHGHVHGEGGHLH
CCCCCCCCEEEEEEEEEHHHHHHHHHHCCCEECCCCCCC
>Mature Secondary Structure
MKIEKDCVVRFHYIVSEVGQAPFESSKERNPLAILIGHGNIIPGLEKAMLDKHAGESFSV
CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHCCCCCEEE
DVKAADAYGEYREGLTQRIPKKKFGNTRVTPGMQVVLQTNTGTQAVTVQKVGLTVVDVDL
EEEECCHHHHHHHHHHHHCCHHHCCCCCCCCCEEEEEEECCCCEEEEEEECCEEEEEEEC
NHPMAGKDLHFEVEIVEVREATQEEIEHGHVHGEGGHLH
CCCCCCCCEEEEEEEEEHHHHHHHHHHCCCEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11248100 [H]