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The map label for this gene is xseB

Identifier: 182682122

GI number: 182682122

Start: 1774465

End: 1774731

Strand: Reverse

Name: xseB

Synonym: XfasM23_1600

Alternate gene names: 182682122

Gene position: 1774731-1774465 (Counterclockwise)

Preceding gene: 182682123

Following gene: 182682121

Centisome position: 69.99

GC content: 55.06

Gene sequence:

>267_bases
ATGCCAAAACGCTCCCCGCCAGACACCTCCCCCGTTGCCCGCTTTGAACAGTCTCTTCAAGAATTGGAGCAACTGGTACA
GAACATGGAAACCGGAGCACTGAGCTTGGAACAGTCCCTTGGCGCTTACGAACGCGGTATCGCCCTGTATCGTGAATGCC
ATCAAGCCCTGGAACAAGCGCAATTGCGCGTCCGGATATTGAGCGATCCAATGCACCCAGATGACGGTGAACCGTTTGAT
CCCAGCCTCGTGAGTACATCCCAGTGA

Upstream 100 bases:

>100_bases
CTGGTCACCTGGTTGCAGGCTCATCGCCTCAAACTACGCTGGCAATACCACAACAACACATGCATTTGACCATCCCGATG
ACACCCCGCACACTTGCCCG

Downstream 100 bases:

>100_bases
GCAAAGCGCTGTTCACGCGCTGGTGCCAACGCACCGACAGCTACTTAGAACGAACGTTATCCATCCCCACCCAAGCACCA
CAGCGGCTCCAGGCCGCGAT

Product: exodeoxyribonuclease VII small subunit

Products: NA

Alternate protein names: Exodeoxyribonuclease VII small subunit; Exonuclease VII small subunit

Number of amino acids: Translated: 88; Mature: 87

Protein sequence:

>88_residues
MPKRSPPDTSPVARFEQSLQELEQLVQNMETGALSLEQSLGAYERGIALYRECHQALEQAQLRVRILSDPMHPDDGEPFD
PSLVSTSQ

Sequences:

>Translated_88_residues
MPKRSPPDTSPVARFEQSLQELEQLVQNMETGALSLEQSLGAYERGIALYRECHQALEQAQLRVRILSDPMHPDDGEPFD
PSLVSTSQ
>Mature_87_residues
PKRSPPDTSPVARFEQSLQELEQLVQNMETGALSLEQSLGAYERGIALYRECHQALEQAQLRVRILSDPMHPDDGEPFDP
SLVSTSQ

Specific function: Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides

COG id: COG1722

COG function: function code L; Exonuclease VII small subunit

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xseB family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): EX7S_XYLF2 (B2I7B1)

Other databases:

- EMBL:   CP001011
- RefSeq:   YP_001830282.1
- ProteinModelPortal:   B2I7B1
- SMR:   B2I7B1
- GeneID:   6202723
- GenomeReviews:   CP001011_GR
- KEGG:   xfn:XfasM23_1600
- HOGENOM:   HBG728416
- OMA:   PENASPV
- ProtClustDB:   PRK00977
- GO:   GO:0005737
- HAMAP:   MF_00337
- InterPro:   IPR003761
- PIRSF:   PIRSF006488
- ProDom:   PD028235
- TIGRFAMs:   TIGR01280

Pfam domain/function: PF02609 Exonuc_VII_S

EC number: =3.1.11.6

Molecular weight: Translated: 9866; Mature: 9735

Theoretical pI: Translated: 4.31; Mature: 4.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKRSPPDTSPVARFEQSLQELEQLVQNMETGALSLEQSLGAYERGIALYRECHQALEQA
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QLRVRILSDPMHPDDGEPFDPSLVSTSQ
HHHHHHHCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
PKRSPPDTSPVARFEQSLQELEQLVQNMETGALSLEQSLGAYERGIALYRECHQALEQA
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QLRVRILSDPMHPDDGEPFDPSLVSTSQ
HHHHHHHCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA