Click here to switch to the map view.

The map label for this gene is yfhQ [C]

Identifier: 182682100

GI number: 182682100

Start: 1750558

End: 1751349

Strand: Reverse

Name: yfhQ [C]

Synonym: XfasM23_1578

Alternate gene names: 182682100

Gene position: 1751349-1750558 (Counterclockwise)

Preceding gene: 182682104

Following gene: 182682098

Centisome position: 69.07

GC content: 56.31

Gene sequence:

>792_bases
ATGCAGCACTACACTTCTTTGGTCTCCCTCACCATGTTTGCATTCCCGCGTCTGCGTTTTGTCCTTGTTGGTACCCAGCA
TCCAGGCAACATCGGTGCGGCTGCCCGCGCCATGAAGACGATGGGGATATCGCGTTTGGTCCTGGTTGCGCCCGAATGCC
AGCTCGATGAACATGCTTACCGGCGTTCGGCAGGCGCTGAAGATGTCCTGGAGGCCGCCTCCGTGCATACCGTTCTGGCC
GATGCCGTGGCCGATTGCACCTTTGTGCTTGGATGCACCGCACGCACGCGCCGTGTTGCCTTTGAGGAACTACGTCCGGC
AGCAGCGGCATCCCAGATCCTGACGAACATTAACGCAGCAGGTGAAGTCGCGTTGTTGTTTGGACGCGAACGCACCGGAC
TGACCAACGAAGAACTGCAGCTATGCCATGTTGCCGTGCATATTCCTGCTGATCCACTGTTTAGCTCATTGAACCTGGCC
GCTGCCGTGCAGATCTTGGCCTATGAAATCCGTTTGGCATCTCTTGATGCACCCTCCGCGCCCCTCCATTCAACCTCAGG
ATTCCGCAAGACACCCGCCAGCCATGCCCAACTGGAAGGTTTATTCGGCCAATTCAAACAGACCTTGGATGAGATCGATT
TTCACAAAGGGCGCGCCCCGGAATCGGCAATGCGCAAATTGCGTCGCCTCTTTGCCAAGGCCGAACTAACCCAGCAAGAA
ATAAGATTACTTCGGGGAGTACTCTCCGATGTCCAACGTATCGTCATGCTGAAACGTCAGCGCGACACCTGA

Upstream 100 bases:

>100_bases
GCGGGTTTCTGCATGCCTGGAGACTCTCGTCACGTGAGAAGAGTGGATGGTTGAGTAGGGGGAGGAACAATCCAGTGCGT
CGCCCGTCGGGCAGTTTACC

Downstream 100 bases:

>100_bases
ACCATCGCATCGCGTCCCGGAGTTTTTCATCTGGTGAGCGTGATGCGCATGGATCACCACAGAGACCGTCACAGACAGCA
TGACCTTCGTTGAGCCGCGC

Product: RNA methyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 263; Mature: 263

Protein sequence:

>263_residues
MQHYTSLVSLTMFAFPRLRFVLVGTQHPGNIGAAARAMKTMGISRLVLVAPECQLDEHAYRRSAGAEDVLEAASVHTVLA
DAVADCTFVLGCTARTRRVAFEELRPAAAASQILTNINAAGEVALLFGRERTGLTNEELQLCHVAVHIPADPLFSSLNLA
AAVQILAYEIRLASLDAPSAPLHSTSGFRKTPASHAQLEGLFGQFKQTLDEIDFHKGRAPESAMRKLRRLFAKAELTQQE
IRLLRGVLSDVQRIVMLKRQRDT

Sequences:

>Translated_263_residues
MQHYTSLVSLTMFAFPRLRFVLVGTQHPGNIGAAARAMKTMGISRLVLVAPECQLDEHAYRRSAGAEDVLEAASVHTVLA
DAVADCTFVLGCTARTRRVAFEELRPAAAASQILTNINAAGEVALLFGRERTGLTNEELQLCHVAVHIPADPLFSSLNLA
AAVQILAYEIRLASLDAPSAPLHSTSGFRKTPASHAQLEGLFGQFKQTLDEIDFHKGRAPESAMRKLRRLFAKAELTQQE
IRLLRGVLSDVQRIVMLKRQRDT
>Mature_263_residues
MQHYTSLVSLTMFAFPRLRFVLVGTQHPGNIGAAARAMKTMGISRLVLVAPECQLDEHAYRRSAGAEDVLEAASVHTVLA
DAVADCTFVLGCTARTRRVAFEELRPAAAASQILTNINAAGEVALLFGRERTGLTNEELQLCHVAVHIPADPLFSSLNLA
AAVQILAYEIRLASLDAPSAPLHSTSGFRKTPASHAQLEGLFGQFKQTLDEIDFHKGRAPESAMRKLRRLFAKAELTQQE
IRLLRGVLSDVQRIVMLKRQRDT

Specific function: Unknown

COG id: COG0565

COG function: function code J; rRNA methylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family [H]

Homologues:

Organism=Escherichia coli, GI1788881, Length=238, Percent_Identity=42.8571428571429, Blast_Score=176, Evalue=1e-45,
Organism=Escherichia coli, GI1790865, Length=154, Percent_Identity=35.7142857142857, Blast_Score=93, Evalue=2e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004384
- InterPro:   IPR001537 [H]

Pfam domain/function: PF00588 SpoU_methylase [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 28809; Mature: 28809

Theoretical pI: Translated: 8.98; Mature: 8.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQHYTSLVSLTMFAFPRLRFVLVGTQHPGNIGAAARAMKTMGISRLVLVAPECQLDEHAY
CCHHHHHHHHHHHHHHHEEEEEEECCCCCCHHHHHHHHHHHCHHEEEEECCCCCCHHHHH
RRSAGAEDVLEAASVHTVLADAVADCTFVLGCTARTRRVAFEELRPAAAASQILTNINAA
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
GEVALLFGRERTGLTNEELQLCHVAVHIPADPLFSSLNLAAAVQILAYEIRLASLDAPSA
CCEEEEECCCCCCCCHHHHEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
PLHSTSGFRKTPASHAQLEGLFGQFKQTLDEIDFHKGRAPESAMRKLRRLFAKAELTQQE
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
IRLLRGVLSDVQRIVMLKRQRDT
HHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MQHYTSLVSLTMFAFPRLRFVLVGTQHPGNIGAAARAMKTMGISRLVLVAPECQLDEHAY
CCHHHHHHHHHHHHHHHEEEEEEECCCCCCHHHHHHHHHHHCHHEEEEECCCCCCHHHHH
RRSAGAEDVLEAASVHTVLADAVADCTFVLGCTARTRRVAFEELRPAAAASQILTNINAA
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
GEVALLFGRERTGLTNEELQLCHVAVHIPADPLFSSLNLAAAVQILAYEIRLASLDAPSA
CCEEEEECCCCCCCCHHHHEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
PLHSTSGFRKTPASHAQLEGLFGQFKQTLDEIDFHKGRAPESAMRKLRRLFAKAELTQQE
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
IRLLRGVLSDVQRIVMLKRQRDT
HHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]